BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyem127p14 (929 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 303 7e-79 emb|AL731606.2|OSJN00249 Oryza sativa genomic DNA, chromosome 4,... 303 7e-79 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 159 2e-35 dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic D... 159 2e-35 gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome... 127 9e-26 >dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 303 bits (153), Expect = 7e-79 Identities = 249/281 (88%) Strand = Plus / Minus Query: 131 tgccagtacaggggtgtcaggaggaggaaatggggcaagtgggtgtccgaaatccggcag 190 |||||||||||||| || ||||||||||| ||||| ||||||||||| || ||||||||| Sbjct: 22108167 tgccagtacaggggggtgaggaggaggaagtgggggaagtgggtgtcggagatccggcag 22108108 Query: 191 ccgggcaccaagactcgcatctggctcggcagcttcgagtcggccgagatggcggcggtg 250 ||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 22108107 ccggggaccaagacccgcatctggctcgggagcttcgagtcggcggagatggcggcggtg 22108048 Query: 251 gcgcacgacgtggcggcgctgcggctgcggggccgggacgcgcagctcaacttcccgggg 310 |||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| Sbjct: 22108047 gcgcacgacgtggcggcgctccgcctgcgcggccgcgacgcgcagctcaacttcccgggc 22107988 Query: 311 tcggtggacctgctgccccggccggcgagctcgcacccgagtgacatccgcgccgcggcg 370 || || |||| |||||||| ||||| ||||| | |||| | |||||||||||||| ||| Sbjct: 22107987 tccgtcgaccgcctgccccgcccggccagctcccgcccgggcgacatccgcgccgccgcg 22107928 Query: 371 gcggaggcggccgaccgggcgcggtgcgagccggcgctggt 411 |||||||| || ||||||| ||| ||||||| |||||||| Sbjct: 22107927 gcggaggctgcggaccgggtgcgccgcgagcctgcgctggt 22107887 Score = 174 bits (88), Expect = 4e-40 Identities = 142/160 (88%) Strand = Plus / Minus Query: 480 agctgggcgggagcgacgaggagttcgaagtggactcgcccaggctgtgggccgagatgg 539 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 22107806 agctgggcgggagcgacgaggagttcgaggtggactcgccgaggctgtgggccgagatgg 22107747 Query: 540 cggaggccatgctcctggacccgccggcgtgggccacgggcgccggcgagatggaggtcg 599 ||||||||||||| |||||||| |||| |||||| || | | |||||||||| | | Sbjct: 22107746 cggaggccatgctgctggacccaccggtatgggccgtggatgtcagcgagatggaaggcc 22107687 Query: 600 cgcactgctggtcacacgggtccttgtgggacgcctgcta 639 | ||||||||| | |||||||||||||||||||||||||| Sbjct: 22107686 cacactgctgggcccacgggtccttgtgggacgcctgcta 22107647 >emb|AL731606.2|OSJN00249 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058G03, complete sequence Length = 46422 Score = 303 bits (153), Expect = 7e-79 Identities = 249/281 (88%) Strand = Plus / Minus Query: 131 tgccagtacaggggtgtcaggaggaggaaatggggcaagtgggtgtccgaaatccggcag 190 |||||||||||||| || ||||||||||| ||||| ||||||||||| || ||||||||| Sbjct: 6648 tgccagtacaggggggtgaggaggaggaagtgggggaagtgggtgtcggagatccggcag 6589 Query: 191 ccgggcaccaagactcgcatctggctcggcagcttcgagtcggccgagatggcggcggtg 250 ||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 6588 ccggggaccaagacccgcatctggctcgggagcttcgagtcggcggagatggcggcggtg 6529 Query: 251 gcgcacgacgtggcggcgctgcggctgcggggccgggacgcgcagctcaacttcccgggg 310 |||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| Sbjct: 6528 gcgcacgacgtggcggcgctccgcctgcgcggccgcgacgcgcagctcaacttcccgggc 6469 Query: 311 tcggtggacctgctgccccggccggcgagctcgcacccgagtgacatccgcgccgcggcg 370 || || |||| |||||||| ||||| ||||| | |||| | |||||||||||||| ||| Sbjct: 6468 tccgtcgaccgcctgccccgcccggccagctcccgcccgggcgacatccgcgccgccgcg 6409 Query: 371 gcggaggcggccgaccgggcgcggtgcgagccggcgctggt 411 |||||||| || ||||||| ||| ||||||| |||||||| Sbjct: 6408 gcggaggctgcggaccgggtgcgccgcgagcctgcgctggt 6368 Score = 174 bits (88), Expect = 4e-40 Identities = 142/160 (88%) Strand = Plus / Minus Query: 480 agctgggcgggagcgacgaggagttcgaagtggactcgcccaggctgtgggccgagatgg 539 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct: 6287 agctgggcgggagcgacgaggagttcgaggtggactcgccgaggctgtgggccgagatgg 6228 Query: 540 cggaggccatgctcctggacccgccggcgtgggccacgggcgccggcgagatggaggtcg 599 ||||||||||||| |||||||| |||| |||||| || | | |||||||||| | | Sbjct: 6227 cggaggccatgctgctggacccaccggtatgggccgtggatgtcagcgagatggaaggcc 6168 Query: 600 cgcactgctggtcacacgggtccttgtgggacgcctgcta 639 | ||||||||| | |||||||||||||||||||||||||| Sbjct: 6167 cacactgctgggcccacgggtccttgtgggacgcctgcta 6128 >dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 159 bits (80), Expect = 2e-35 Identities = 229/278 (82%), Gaps = 3/278 (1%) Strand = Plus / Minus Query: 134 cagtacaggggtgtcaggaggaggaaatggggcaagtgggtgtccgaaatccggcagccg 193 ||||||||||| || ||| || |||| ||||| ||||||||||| || ||| ||||||| Sbjct: 21204013 cagtacaggggggtgaggcggcggaagtgggggaagtgggtgtcggagatcaggcagccc 21203954 Query: 194 ggcaccaagactcgcatctggctcggcagcttcgagtcggccgagatggcggcggtggcg 253 || |||||| ||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct: 21203953 gggaccaaggtccgcatctggctggggagcttcgactcggcggagatggcggcggtggcg 21203894 Query: 254 cacgacgtggcggcgctgcggctgcggggccggga---cgcgcagctcaacttcccgggg 310 |||||||| ||||||||||||||||| || |||| ||||||||||||||||||||| Sbjct: 21203893 cacgacgtcgcggcgctgcggctgcgcgggagggacggcgcgcagctcaacttcccgggc 21203834 Query: 311 tcggtggacctgctgccccggccggcgagctcgcacccgagtgacatccgcgccgcggcg 370 || || | | ||| |||| |||||| | | | |||| |||||||||||||| || Sbjct: 21203833 tccgtcggctggctcccccagccggccaccaccgaccccgtcgacatccgcgccgccgcc 21203774 Query: 371 gcggaggcggccgaccgggcgcggtgcgagccggcgct 408 || ||||||||||| |||| ||| ||||||||||||| Sbjct: 21203773 gccgaggcggccgagcgggtgcgccgcgagccggcgct 21203736 Score = 83.8 bits (42), Expect = 1e-12 Identities = 77/88 (87%), Gaps = 3/88 (3%) Strand = Plus / Minus Query: 477 tggagctgggcgggagcgacgaggagttcgaag---tggactcgcccaggctgtgggccg 533 ||||||||||||| |||||| |||||||| | |||| ||||| ||||||||||||| Sbjct: 21203700 tggagctgggcggcggcgacggcgagttcgacgagatggagtcgccgaggctgtgggccg 21203641 Query: 534 agatggcggaggccatgctcctggaccc 561 ||||||||||||||||||| |||||||| Sbjct: 21203640 agatggcggaggccatgctgctggaccc 21203613 >dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0038F20 Length = 129595 Score = 159 bits (80), Expect = 2e-35 Identities = 229/278 (82%), Gaps = 3/278 (1%) Strand = Plus / Minus Query: 134 cagtacaggggtgtcaggaggaggaaatggggcaagtgggtgtccgaaatccggcagccg 193 ||||||||||| || ||| || |||| ||||| ||||||||||| || ||| ||||||| Sbjct: 110729 cagtacaggggggtgaggcggcggaagtgggggaagtgggtgtcggagatcaggcagccc 110670 Query: 194 ggcaccaagactcgcatctggctcggcagcttcgagtcggccgagatggcggcggtggcg 253 || |||||| ||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct: 110669 gggaccaaggtccgcatctggctggggagcttcgactcggcggagatggcggcggtggcg 110610 Query: 254 cacgacgtggcggcgctgcggctgcggggccggga---cgcgcagctcaacttcccgggg 310 |||||||| ||||||||||||||||| || |||| ||||||||||||||||||||| Sbjct: 110609 cacgacgtcgcggcgctgcggctgcgcgggagggacggcgcgcagctcaacttcccgggc 110550 Query: 311 tcggtggacctgctgccccggccggcgagctcgcacccgagtgacatccgcgccgcggcg 370 || || | | ||| |||| |||||| | | | |||| |||||||||||||| || Sbjct: 110549 tccgtcggctggctcccccagccggccaccaccgaccccgtcgacatccgcgccgccgcc 110490 Query: 371 gcggaggcggccgaccgggcgcggtgcgagccggcgct 408 || ||||||||||| |||| ||| ||||||||||||| Sbjct: 110489 gccgaggcggccgagcgggtgcgccgcgagccggcgct 110452 Score = 83.8 bits (42), Expect = 1e-12 Identities = 77/88 (87%), Gaps = 3/88 (3%) Strand = Plus / Minus Query: 477 tggagctgggcgggagcgacgaggagttcgaag---tggactcgcccaggctgtgggccg 533 ||||||||||||| |||||| |||||||| | |||| ||||| ||||||||||||| Sbjct: 110416 tggagctgggcggcggcgacggcgagttcgacgagatggagtcgccgaggctgtgggccg 110357 Query: 534 agatggcggaggccatgctcctggaccc 561 ||||||||||||||||||| |||||||| Sbjct: 110356 agatggcggaggccatgctgctggaccc 110329 >gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091I11, complete sequence Length = 135993 Score = 127 bits (64), Expect = 9e-26 Identities = 136/160 (85%) Strand = Plus / Minus Query: 149 aggaggaggaaatggggcaagtgggtgtccgaaatccggcagccgggcaccaagactcgc 208 |||| |||||| ||||| ||||||||||| || ||| || |||| || | ||||| ||| Sbjct: 6527 aggaagaggaagtgggggaagtgggtgtcggagatcagggagcccgggaagaagacgcgc 6468 Query: 209 atctggctcggcagcttcgagtcggccgagatggcggcggtggcgcacgacgtggcggcg 268 ||||||||||| |||||||||||| | |||||||| || ||||||||||||||||| ||| Sbjct: 6467 atctggctcgggagcttcgagtcgccggagatggccgccgtggcgcacgacgtggccgcg 6408 Query: 269 ctgcggctgcggggccgggacgcgcagctcaacttcccgg 308 || || || ||||| |||||||||| ||||||||||||| Sbjct: 6407 ctccgcctccgggggcgggacgcgcgcctcaacttcccgg 6368