BLASTN 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyem125j02
         (975 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 
           5,422,427 sequences; 20,945,727,253 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|X69328.1|TAU1C T.aestivum (clone pTAU1.2) U1 snRNA                248   4e-62
gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome...   246   1e-61
gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome...   246   1e-61
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...   246   1e-61
dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic D...   238   3e-59

>emb|X69328.1|TAU1C T.aestivum (clone pTAU1.2) U1 snRNA
          Length = 159

 Score =  248 bits (125), Expect = 4e-62
 Identities = 150/157 (95%), Gaps = 1/157 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttacctggacggggtcaacggacgatcaaaaaggctcgtggcctagatcaatggctca 60
           |||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||| |||
Sbjct: 1   acttacctggacggggtcgacggccgatcaagaagggtcgtggcctagatcaatgg-tca 59

                                                                       
Query: 61  cattgcacctggtgagcgcgttggtctaccatctccccaagtgggagagtggacgtcgta 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 60  cattgcacctggtgagcgcgttggcctaccatctccccaagtgggagagtggacgtcgta 119

                                                
Query: 121 atttgtggtagagggggtacgtgttcgcgcggcccct 157
           ||||||||||||||||||||| |||||||||||||||
Sbjct: 120 atttgtggtagagggggtacgcgttcgcgcggcccct 156


>gb|AC140005.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1004C08,
             complete sequence
          Length = 138054

 Score =  246 bits (124), Expect = 1e-61
 Identities = 154/164 (93%)
 Strand = Plus / Minus

                                                                         
Query: 1     acttacctggacggggtcaacggacgatcaaaaaggctcgtggcctagatcaatggctca 60
             |||||||||||||||||| |||| ||||||| ||||  ||||||||||||||||||||||
Sbjct: 97791 acttacctggacggggtcgacggccgatcaagaagggccgtggcctagatcaatggctca 97732

                                                                         
Query: 61    cattgcacctggtgagcgcgttggtctaccatctccccaagtgggagagtggacgtcgta 120
             |||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| ||
Sbjct: 97731 cattgcacttggtgagcgcgttggtttaccatctccccgagtgggagagtggacgtcata 97672

                                                         
Query: 121   atttgtggtagagggggtacgtgttcgcgcggcccctgccaatt 164
             ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 97671 atttgtggtagagggggtacgcgttcgcgcggcccctgccaatt 97628


>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06,
              complete sequence
          Length = 122218

 Score =  246 bits (124), Expect = 1e-61
 Identities = 154/164 (93%)
 Strand = Plus / Plus

                                                                          
Query: 1      acttacctggacggggtcaacggacgatcaaaaaggctcgtggcctagatcaatggctca 60
              |||||||||||||||||| |||| ||||||| ||||  ||||||||||||||||||||||
Sbjct: 102482 acttacctggacggggtcgacggccgatcaagaagggccgtggcctagatcaatggctca 102541

                                                                          
Query: 61     cattgcacctggtgagcgcgttggtctaccatctccccaagtgggagagtggacgtcgta 120
              |||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| ||
Sbjct: 102542 cattgcacttggtgagcgcgttggtttaccatctccccgagtgggagagtggacgtcata 102601

                                                          
Query: 121    atttgtggtagagggggtacgtgttcgcgcggcccctgccaatt 164
              ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 102602 atttgtggtagagggggtacgcgttcgcgcggcccctgccaatt 102645


>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score =  246 bits (124), Expect = 1e-61
 Identities = 154/164 (93%)
 Strand = Plus / Minus

                                                                           
Query: 1       acttacctggacggggtcaacggacgatcaaaaaggctcgtggcctagatcaatggctca 60
               |||||||||||||||||| |||| ||||||| ||||  ||||||||||||||||||||||
Sbjct: 1872927 acttacctggacggggtcgacggccgatcaagaagggccgtggcctagatcaatggctca 1872868

                                                                           
Query: 61      cattgcacctggtgagcgcgttggtctaccatctccccaagtgggagagtggacgtcgta 120
               |||||||| |||||||||||||||| |||||||||||| |||||||||||||||||| ||
Sbjct: 1872867 cattgcacttggtgagcgcgttggtttaccatctccccgagtgggagagtggacgtcata 1872808

                                                           
Query: 121     atttgtggtagagggggtacgtgttcgcgcggcccctgccaatt 164
               ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1872807 atttgtggtagagggggtacgcgttcgcgcggcccctgccaatt 1872764



 Score =  238 bits (120), Expect = 3e-59
 Identities = 153/164 (93%)
 Strand = Plus / Minus

                                                                           
Query: 1       acttacctggacggggtcaacggacgatcaaaaaggctcgtggcctagatcaatggctca 60
               |||||||||||||||||| |||| ||||||| ||||  ||||||||||||||||||||||
Sbjct: 1695626 acttacctggacggggtcgacggccgatcaagaagggccgtggcctagatcaatggctca 1695567

                                                                           
Query: 61      cattgcacctggtgagcgcgttggtctaccatctccccaagtgggagagtggacgtcgta 120
               |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 1695566 cattgcacttggtgagcgcgttggtttaccatctccccaagtgggagagtggacgtcata 1695507

                                                           
Query: 121     atttgtggtagagggggtacgtgttcgcgcggcccctgccaatt 164
               ||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct: 1695506 atttgtgatagagggggtacgcgttcgcgcggcccctgtcaatt 1695463



 Score =  218 bits (110), Expect = 3e-53
 Identities = 149/162 (91%)
 Strand = Plus / Plus

                                                                            
Query: 1        acttacctggacggggtcaacggacgatcaaaaaggctcgtggcctagatcaatggctca 60
                ||||||||||||||||||||||| ||||||| ||||||||||||||||  ||||||| ||
Sbjct: 34119831 acttacctggacggggtcaacgggcgatcaagaaggctcgtggcctaggccaatggccca 34119890

                                                                            
Query: 61       cattgcacctggtgagcgcgttggtctaccatctccccaagtgggagagtggacgtcgta 120
                |||||||| ||||| |||||||||  ||||||||||||||||||||||||||||||| ||
Sbjct: 34119891 cattgcacttggtgggcgcgttggcttaccatctccccaagtgggagagtggacgtcata 34119950

                                                          
Query: 121      atttgtggtagagggggtacgtgttcgcgcggcccctgccaa 162
                ||||||||||| ||||||||| || |||||||||||||||||
Sbjct: 34119951 atttgtggtagggggggtacgcgtccgcgcggcccctgccaa 34119992



 Score =  218 bits (110), Expect = 3e-53
 Identities = 152/166 (91%)
 Strand = Plus / Minus

                                                                            
Query: 1        acttacctggacggggtcaacggacgatcaaaaaggctcgtggcctagatcaatggctca 60
                ||||||||||||||||||||||| ||||||  ||||||||||||||||  ||||||| ||
Sbjct: 34347435 acttacctggacggggtcaacgggcgatcaggaaggctcgtggcctaggccaatggccca 34347376

                                                                            
Query: 61       cattgcacctggtgagcgcgttggtctaccatctccccaagtgggagagtggacgtcgta 120
                |||||||| ||||| |||||||||  ||||||||||||||||||||||||||||||| ||
Sbjct: 34347375 cattgcacttggtgggcgcgttggcttaccatctccccaagtgggagagtggacgtcata 34347316

                                                              
Query: 121      atttgtggtagagggggtacgtgttcgcgcggcccctgccaatttt 166
                ||||||||| ||||||||||| ||||||||||||| ||||||||||
Sbjct: 34347315 atttgtggtggagggggtacgcgttcgcgcggcccttgccaatttt 34347270



 Score =  218 bits (110), Expect = 3e-53
 Identities = 149/162 (91%)
 Strand = Plus / Minus

                                                                            
Query: 1        acttacctggacggggtcaacggacgatcaaaaaggctcgtggcctagatcaatggctca 60
                ||||||||||||||||||||||| ||||||| ||||||||||||||||  ||||||| ||
Sbjct: 34349066 acttacctggacggggtcaacgggcgatcaagaaggctcgtggcctaggccaatggccca 34349007

                                                                            
Query: 61       cattgcacctggtgagcgcgttggtctaccatctccccaagtgggagagtggacgtcgta 120
                |||||||| ||||| ||||||| |  ||||||||||||||||||||||||||||||| ||
Sbjct: 34349006 cattgcacttggtgggcgcgttagcttaccatctccccaagtgggagagtggacgtcata 34348947

                                                          
Query: 121      atttgtggtagagggggtacgtgttcgcgcggcccctgccaa 162
                ||||||||||||||||||||| || |||||||||||||||||
Sbjct: 34348946 atttgtggtagagggggtacgcgtccgcgcggcccctgccaa 34348905



 Score =  163 bits (82), Expect = 2e-36
 Identities = 142/162 (87%)
 Strand = Plus / Plus

                                                                            
Query: 1        acttacctggacggggtcaacggacgatcaaaaaggctcgtggcctagatcaatggctca 60
                |||||||||||||||||| | ||  |||||| ||||| | |||||| |   |||||| ||
Sbjct: 35266391 acttacctggacggggtcgatgggtgatcaataaggcccatggcctgggctaatggccca 35266450

                                                                            
Query: 61       cattgcacctggtgagcgcgttggtctaccatctccccaagtgggagagtggacgtcgta 120
                |||||||| |||||   ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 35266451 cattgcacttggtggatgcgttggcctaccatctccccaagtgggagagtggacgtcata 35266510

                                                          
Query: 121      atttgtggtagagggggtacgtgttcgcgcggcccctgccaa 162
                ||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 35266511 atttgtggtagagggggtacgcgttcgcgcggccccttccaa 35266552


>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              clone:P0043E01
          Length = 154128

 Score =  238 bits (120), Expect = 3e-59
 Identities = 153/164 (93%)
 Strand = Plus / Minus

                                                                          
Query: 1      acttacctggacggggtcaacggacgatcaaaaaggctcgtggcctagatcaatggctca 60
              |||||||||||||||||| |||| ||||||| ||||  ||||||||||||||||||||||
Sbjct: 108091 acttacctggacggggtcgacggccgatcaagaagggccgtggcctagatcaatggctca 108032

                                                                          
Query: 61     cattgcacctggtgagcgcgttggtctaccatctccccaagtgggagagtggacgtcgta 120
              |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 108031 cattgcacttggtgagcgcgttggtttaccatctccccaagtgggagagtggacgtcata 107972

                                                          
Query: 121    atttgtggtagagggggtacgtgttcgcgcggcccctgccaatt 164
              ||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct: 107971 atttgtgatagagggggtacgcgttcgcgcggcccctgtcaatt 107928