BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyem124d07 (1085 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001050065.1| Oryza sativa (japonica cultivar-group) Os01g... 202 2e-48 dbj|AK109289.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 2e-48 gb|AY110978.1| Zea mays CL7313_1 mRNA sequence 184 5e-43 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 103 1e-18 dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic D... 103 1e-18 >ref|NM_001050065.1| Oryza sativa (japonica cultivar-group) Os01g0607300 (Os01g0607300) mRNA, partial cds Length = 1252 Score = 202 bits (102), Expect = 2e-48 Identities = 203/236 (86%), Gaps = 3/236 (1%) Strand = Plus / Plus Query: 178 gaggagctggagccgctcttcgactactcccgcgtccagcccaccatcgccttctgcttc 237 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| Sbjct: 230 gaggagctggagccgctcttcgactactcccgcgtgcagcccaccatggccttcagcttc 289 Query: 238 gacgataccgacctggagaagtcggacatcttcgtccactgcaacaagcgccgcaaggtg 297 |||||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 290 gacgataccgacattgagaagtccgacatcttcgtccactgcaacaagcggcgcaaggtg 349 Query: 298 accaacgccgacgccgacggcagagccgacgctattgagggcgataaggctgacgagaag 357 || ||| ||||| ||||| || ||||||| | |||| ||||||| ||| ||||| Sbjct: 350 gccgacggcgacggcgacgccaatgccgacgaga---agggggataagggtgagcagaag 406 Query: 358 ggcgtgaaggtggccacggtggtggatttgggggaggaggattggctgcctccgcc 413 | || ||||| ||| |||| || || ||||| ||||||||||||||||| ||||| Sbjct: 407 gccgcgaaggctgccgcggtagtcgacttgggagaggaggattggctgccgccgcc 462 Score = 111 bits (56), Expect = 6e-21 Identities = 191/236 (80%) Strand = Plus / Plus Query: 620 aagcgagagaaaagatagtcgtaacgattcaggacaaagatggacagcagcagtttcgtg 679 |||| ||||||||| | |||||||| |||||||||||| |||||| || |||||||| Sbjct: 672 aagcaagagaaaaggtggtcgtaacagttcaggacaaagctggacatcaccagtttcggt 731 Query: 680 tatacaaggatgagaagttggacaagcttttcaaggcgtacgccaagaaggccaagctca 739 ||||||||||||||||||| | ||||||||| | ||| || || ||||||| || |||| Sbjct: 732 tatacaaggatgagaagtttggcaagctttttagggcatatgctaagaaggttaatctca 791 Query: 740 gcccgtccgatctgactttcgtatttgatggcgacaaaataaacccagcaagtacacccg 799 || | || ||||| || | ||| ||||| |||||| | || ||| ||| ||||| | Sbjct: 792 gcgtcgcagacctgacatttgcattcgatggtgacaaagttgacgcagaaagcacaccag 851 Query: 800 aggaccttggcctggaggatgatgacatgatcgaggtgtgccataagccacgctga 855 ||||||||||||||||||| || |||||| | |||||| ||||||| |||||||| Sbjct: 852 aggaccttggcctggaggacgaggacatggttgaggtgctccataagacacgctga 907 >dbj|AK109289.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C07, full insert sequence Length = 1254 Score = 202 bits (102), Expect = 2e-48 Identities = 203/236 (86%), Gaps = 3/236 (1%) Strand = Plus / Plus Query: 178 gaggagctggagccgctcttcgactactcccgcgtccagcccaccatcgccttctgcttc 237 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| Sbjct: 232 gaggagctggagccgctcttcgactactcccgcgtgcagcccaccatggccttcagcttc 291 Query: 238 gacgataccgacctggagaagtcggacatcttcgtccactgcaacaagcgccgcaaggtg 297 |||||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 292 gacgataccgacattgagaagtccgacatcttcgtccactgcaacaagcggcgcaaggtg 351 Query: 298 accaacgccgacgccgacggcagagccgacgctattgagggcgataaggctgacgagaag 357 || ||| ||||| ||||| || ||||||| | |||| ||||||| ||| ||||| Sbjct: 352 gccgacggcgacggcgacgccaatgccgacgaga---agggggataagggtgagcagaag 408 Query: 358 ggcgtgaaggtggccacggtggtggatttgggggaggaggattggctgcctccgcc 413 | || ||||| ||| |||| || || ||||| ||||||||||||||||| ||||| Sbjct: 409 gccgcgaaggctgccgcggtagtcgacttgggagaggaggattggctgccgccgcc 464 Score = 111 bits (56), Expect = 6e-21 Identities = 191/236 (80%) Strand = Plus / Plus Query: 620 aagcgagagaaaagatagtcgtaacgattcaggacaaagatggacagcagcagtttcgtg 679 |||| ||||||||| | |||||||| |||||||||||| |||||| || |||||||| Sbjct: 674 aagcaagagaaaaggtggtcgtaacagttcaggacaaagctggacatcaccagtttcggt 733 Query: 680 tatacaaggatgagaagttggacaagcttttcaaggcgtacgccaagaaggccaagctca 739 ||||||||||||||||||| | ||||||||| | ||| || || ||||||| || |||| Sbjct: 734 tatacaaggatgagaagtttggcaagctttttagggcatatgctaagaaggttaatctca 793 Query: 740 gcccgtccgatctgactttcgtatttgatggcgacaaaataaacccagcaagtacacccg 799 || | || ||||| || | ||| ||||| |||||| | || ||| ||| ||||| | Sbjct: 794 gcgtcgcagacctgacatttgcattcgatggtgacaaagttgacgcagaaagcacaccag 853 Query: 800 aggaccttggcctggaggatgatgacatgatcgaggtgtgccataagccacgctga 855 ||||||||||||||||||| || |||||| | |||||| ||||||| |||||||| Sbjct: 854 aggaccttggcctggaggacgaggacatggttgaggtgctccataagacacgctga 909 >gb|AY110978.1| Zea mays CL7313_1 mRNA sequence Length = 1148 Score = 184 bits (93), Expect = 5e-43 Identities = 300/369 (81%) Strand = Plus / Plus Query: 469 ctgagattaaagaagcaagagttggcaaaattagctgaatcagctcaagatatactggaa 528 ||||| || ||||| ||||||| ||||||||| |||||||||||| | |||||| || || Sbjct: 119 ctgaggttgaagaaacaagagtgggcaaaattcgctgaatcagctgaggatatattgcaa 178 Query: 529 aagttggttgaaactgctaagaaagaccttgaagccaagaaaacacctgaacatatagtt 588 ||| ||| ||||| | || ||||| ||| ||||| || |||||||||| ||| || Sbjct: 179 aagctggatgaaatcacgaacaaagaagttggtcccaaggaaccacctgaacagataatt 238 Query: 589 ctagatgagccatctgaaccagaagtggagaaagcgagagaaaagatagtcgtaacgatt 648 ||||||||| |||||||| |||| |||||||| || |||||||||||| || | || Sbjct: 239 ctagatgaggagtctgaacctcaagtcgagaaagccagggaaaagatagtcatatcaatc 298 Query: 649 caggacaaagatggacagcagcagtttcgtgtatacaaggatgagaagttggacaagctt 708 |||||||| ||||| ||||| ||| | |||||||||||||| || ||||| ||||||||| Sbjct: 299 caggacaaggatgggcagcaacagatgcgtgtatacaaggacgaaaagttcgacaagctt 358 Query: 709 ttcaaggcgtacgccaagaaggccaagctcagcccgtccgatctgactttcgtatttgat 768 |||||| ||||||||||||||| ||||||| ||| || |||||| |||| || |||||| Sbjct: 359 ctcaaggtgtacgccaagaaggcaaagctcaacccatctgatctgtcttttgtgtttgat 418 Query: 769 ggcgacaaaataaacccagcaagtacacccgaggaccttggcctggaggatgatgacatg 828 || || || || || ||| || |||||| ||||||||| |||||||| || |||||| Sbjct: 419 ggtgagaagattaatccatcatctacacctcaggaccttgatctggaggacgaagacatg 478 Query: 829 atcgaggtg 837 || |||||| Sbjct: 479 attgaggtg 487 >dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 103 bits (52), Expect = 1e-18 Identities = 61/64 (95%) Strand = Plus / Plus Query: 178 gaggagctggagccgctcttcgactactcccgcgtccagcccaccatcgccttctgcttc 237 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| Sbjct: 23930573 gaggagctggagccgctcttcgactactcccgcgtgcagcccaccatggccttcagcttc 23930632 Query: 238 gacg 241 |||| Sbjct: 23930633 gacg 23930636 Score = 87.7 bits (44), Expect = 9e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 241 gataccgacctggagaagtcggacatcttcgtccactgcaacaagcgccgcaaggtgacc 300 ||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||| || Sbjct: 23930763 gataccgacattgagaagtccgacatcttcgtccactgcaacaagcggcgcaaggtggcc 23930822 Query: 301 aacgccgacgccgacg 316 ||| ||||| ||||| Sbjct: 23930823 gacggcgacggcgacg 23930838 >dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0704D04 Length = 147638 Score = 103 bits (52), Expect = 1e-18 Identities = 61/64 (95%) Strand = Plus / Plus Query: 178 gaggagctggagccgctcttcgactactcccgcgtccagcccaccatcgccttctgcttc 237 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| Sbjct: 76977 gaggagctggagccgctcttcgactactcccgcgtgcagcccaccatggccttcagcttc 77036 Query: 238 gacg 241 |||| Sbjct: 77037 gacg 77040 Score = 87.7 bits (44), Expect = 9e-14 Identities = 68/76 (89%) Strand = Plus / Plus Query: 241 gataccgacctggagaagtcggacatcttcgtccactgcaacaagcgccgcaaggtgacc 300 ||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||| || Sbjct: 77167 gataccgacattgagaagtccgacatcttcgtccactgcaacaagcggcgcaaggtggcc 77226 Query: 301 aacgccgacgccgacg 316 ||| ||||| ||||| Sbjct: 77227 gacggcgacggcgacg 77242