BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyem122n08 (1074 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001059119.1| Oryza sativa (japonica cultivar-group) Os04g... 888 0.0 emb|CR855089.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 392 e-105 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 392 e-105 emb|AL731623.3|OSJN00263 Oryza sativa genomic DNA, chromosome 4,... 392 e-105 emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4,... 392 e-105 >ref|NM_001059119.1| Oryza sativa (japonica cultivar-group) Os04g0376700 (Os04g0376700) mRNA, complete cds Length = 648 Score = 888 bits (448), Expect = 0.0 Identities = 598/648 (92%) Strand = Plus / Plus Query: 79 atgaacgccttcaggttcgccggcgacatgacgcacctcacgagcgtcctcgtcctcctg 138 ||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||||||||| Sbjct: 1 atgaacgccttcaggctcgccggggacatgacgcacatcatgagcgtcctcgtcctcctg 60 Query: 139 ctcaagatccacaccatcaagtcctgcgccggcgtttccttgaagacacaagagttatat 198 ||||||||||||||||||||||| ||||| || ||||||||||| ||||| ||| ||||| Sbjct: 61 ctcaagatccacaccatcaagtcttgcgctggtgtttccttgaaaacacaggagctatat 120 Query: 199 gctcttgttttcgtcactcgctacttggacatatttacagactttatatccctgtacaat 258 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 121 gctcttgttttcgccactcgctacttggacatatttacagactttatatccctatacaat 180 Query: 259 acggtcatgaagctgattttcctgggtagctcgttctcaattgtttggtatataagacgc 318 || ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct: 181 acagtcatgaagatgattttcctgggtagctcattctcaattgtttggtatataaggcgc 240 Query: 319 cacaagatggtccatagatcatatgataaggatcatgacacattccgacatcaatttctt 378 ||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||| Sbjct: 241 cacaagatggtccgcagatcatatgataaggatcacgatacatttcgacatcaatttctt 300 Query: 379 gttctaccatgtcttctcttggccttgcttatacatgagaagttcactttcagggaggtg 438 |||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 301 gttctaccatgttttcttttggccttgcttatacatgagaagttcacttttagggaggtg 360 Query: 439 atgtggacgttttccatttacctagaggctgttgcaattcttcctcaacttgtactacta 498 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 361 atgtggacgttttccatttatctggaggctgttgcaattcttcctcaacttgtactacta 420 Query: 499 cagcgtacaagaaacatcgacaatttaactgggcaatatgttttcttcctaggtgcatac 558 ||||||||| | ||| | || |||||||| ||||||||||| ||||||||||| |||||| Sbjct: 421 cagcgtacacggaacgttgataatttaacagggcaatatgtgttcttcctaggcgcatac 480 Query: 559 cgagcattctacattctcaactggatctaccgctccttcactgagccacactatgtacat 618 |||||||| ||||| ||||||||| |||||||| ||||||||||||||||||||| ||| Sbjct: 481 cgagcattatacatcctcaactgggcctaccgctacttcactgagccacactatgtgcat 540 Query: 619 tggataacttggatatctgcatctgtgcagacattattgtacgcagatttcttctattat 678 |||||||| |||||||| | || ||||||||||| ||||| |||||||||||||||||| Sbjct: 541 tggataacctggatatcaggattcgtgcagacattgttgtatgcagatttcttctattat 600 Query: 679 tacctcaacagttggaagaacaatgtgaagctcaccctaccagcttga 726 |||||||| |||| ||||||||||||||||||||||||||||| |||| Sbjct: 601 tacctcaatagtttgaagaacaatgtgaagctcaccctaccagattga 648 >emb|CR855089.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0135C09, complete sequence Length = 85155 Score = 392 bits (198), Expect = e-105 Identities = 249/266 (93%) Strand = Plus / Minus Query: 172 gtttccttgaagacacaagagttatatgctcttgttttcgtcactcgctacttggacata 231 ||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 7720 gtttccttgaaaacacaggagctatatgctcttgttttcgccactcgctacttggacata 7661 Query: 232 tttacagactttatatccctgtacaatacggtcatgaagctgattttcctgggtagctcg 291 |||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| Sbjct: 7660 tttacagactttatatccctatacaatacagtcatgaagatgattttcctgggtagctca 7601 Query: 292 ttctcaattgtttggtatataagacgccacaagatggtccatagatcatatgataaggat 351 ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct: 7600 ttctcaattgtttggtatataaggcgccacaagatggtccgcagatcatatgataaggat 7541 Query: 352 catgacacattccgacatcaatttcttgttctaccatgtcttctcttggccttgcttata 411 || || ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct: 7540 cacgatacatttcgacatcaatttcttgttctaccatgttttcttttggccttgcttata 7481 Query: 412 catgagaagttcactttcagggaggt 437 ||||||||||||||||| |||||||| Sbjct: 7480 catgagaagttcacttttagggaggt 7455 Score = 163 bits (82), Expect = 2e-36 Identities = 109/118 (92%) Strand = Plus / Minus Query: 434 aggtgatgtggacgttttccatttacctagaggctgttgcaattcttcctcaacttgtac 493 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 7306 aggtgatgtggacgttttccatttatctggaggctgttgcaattcttcctcaacttgtac 7247 Query: 494 tactacagcgtacaagaaacatcgacaatttaactgggcaatatgttttcttcctagg 551 |||||||||||||| | ||| | || |||||||| ||||||||||| ||||||||||| Sbjct: 7246 tactacagcgtacacggaacgttgataatttaacagggcaatatgtgttcttcctagg 7189 Score = 157 bits (79), Expect = 1e-34 Identities = 91/95 (95%) Strand = Plus / Minus Query: 73 ggcgagatgaacgccttcaggttcgccggcgacatgacgcacctcacgagcgtcctcgtc 132 ||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||| Sbjct: 9134 ggcgagatgaacgccttcaggctcgccggggacatgacgcacctcatgagcgtcctcgtc 9075 Query: 133 ctcctgctcaagatccacaccatcaagtcctgcgc 167 ||||||||||||||||||||||||||||| ||||| Sbjct: 9074 ctcctgctcaagatccacaccatcaagtcttgcgc 9040 Score = 97.6 bits (49), Expect = 9e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 553 gcataccgagcattctacattctcaactggatctaccgctccttcactgagccacactat 612 |||||||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct: 6248 gcataccgagcattatacatcctcaactgggcctaccgctacttcactgagccacactat 6189 Query: 613 gtacattggataa 625 || |||||||||| Sbjct: 6188 gtgcattggataa 6176 >dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 392 bits (198), Expect = e-105 Identities = 249/266 (93%) Strand = Plus / Minus Query: 172 gtttccttgaagacacaagagttatatgctcttgttttcgtcactcgctacttggacata 231 ||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 18426341 gtttccttgaaaacacaggagctatatgctcttgttttcgccactcgctacttggacata 18426282 Query: 232 tttacagactttatatccctgtacaatacggtcatgaagctgattttcctgggtagctcg 291 |||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| Sbjct: 18426281 tttacagactttatatccctatacaatacagtcatgaagatgattttcctgggtagctca 18426222 Query: 292 ttctcaattgtttggtatataagacgccacaagatggtccatagatcatatgataaggat 351 ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct: 18426221 ttctcaattgtttggtatataaggcgccacaagatggtccgcagatcatatgataaggat 18426162 Query: 352 catgacacattccgacatcaatttcttgttctaccatgtcttctcttggccttgcttata 411 || || ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct: 18426161 cacgatacatttcgacatcaatttcttgttctaccatgttttcttttggccttgcttata 18426102 Query: 412 catgagaagttcactttcagggaggt 437 ||||||||||||||||| |||||||| Sbjct: 18426101 catgagaagttcacttttagggaggt 18426076 Score = 163 bits (82), Expect = 2e-36 Identities = 109/118 (92%) Strand = Plus / Minus Query: 434 aggtgatgtggacgttttccatttacctagaggctgttgcaattcttcctcaacttgtac 493 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 18425926 aggtgatgtggacgttttccatttatctggaggctgttgcaattcttcctcaacttgtac 18425867 Query: 494 tactacagcgtacaagaaacatcgacaatttaactgggcaatatgttttcttcctagg 551 |||||||||||||| | ||| | || |||||||| ||||||||||| ||||||||||| Sbjct: 18425866 tactacagcgtacacggaacgttgataatttaacagggcaatatgtgttcttcctagg 18425809 Score = 149 bits (75), Expect = 3e-32 Identities = 90/95 (94%) Strand = Plus / Minus Query: 73 ggcgagatgaacgccttcaggttcgccggcgacatgacgcacctcacgagcgtcctcgtc 132 ||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||| Sbjct: 18427755 ggcgagatgaacgccttcaggctcgccggggacatgacgcacatcatgagcgtcctcgtc 18427696 Query: 133 ctcctgctcaagatccacaccatcaagtcctgcgc 167 ||||||||||||||||||||||||||||| ||||| Sbjct: 18427695 ctcctgctcaagatccacaccatcaagtcttgcgc 18427661 Score = 97.6 bits (49), Expect = 9e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 553 gcataccgagcattctacattctcaactggatctaccgctccttcactgagccacactat 612 |||||||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct: 18424868 gcataccgagcattatacatcctcaactgggcctaccgctacttcactgagccacactat 18424809 Query: 613 gtacattggataa 625 || |||||||||| Sbjct: 18424808 gtgcattggataa 18424796 >emb|AL731623.3|OSJN00263 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083D01, complete sequence Length = 148353 Score = 392 bits (198), Expect = e-105 Identities = 249/266 (93%) Strand = Plus / Minus Query: 172 gtttccttgaagacacaagagttatatgctcttgttttcgtcactcgctacttggacata 231 ||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 7696 gtttccttgaaaacacaggagctatatgctcttgttttcgccactcgctacttggacata 7637 Query: 232 tttacagactttatatccctgtacaatacggtcatgaagctgattttcctgggtagctcg 291 |||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| Sbjct: 7636 tttacagactttatatccctatacaatacagtcatgaagatgattttcctgggtagctca 7577 Query: 292 ttctcaattgtttggtatataagacgccacaagatggtccatagatcatatgataaggat 351 ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct: 7576 ttctcaattgtttggtatataaggcgccacaagatggtccgcagatcatatgataaggat 7517 Query: 352 catgacacattccgacatcaatttcttgttctaccatgtcttctcttggccttgcttata 411 || || ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct: 7516 cacgatacatttcgacatcaatttcttgttctaccatgttttcttttggccttgcttata 7457 Query: 412 catgagaagttcactttcagggaggt 437 ||||||||||||||||| |||||||| Sbjct: 7456 catgagaagttcacttttagggaggt 7431 Score = 163 bits (82), Expect = 2e-36 Identities = 109/118 (92%) Strand = Plus / Minus Query: 434 aggtgatgtggacgttttccatttacctagaggctgttgcaattcttcctcaacttgtac 493 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 7281 aggtgatgtggacgttttccatttatctggaggctgttgcaattcttcctcaacttgtac 7222 Query: 494 tactacagcgtacaagaaacatcgacaatttaactgggcaatatgttttcttcctagg 551 |||||||||||||| | ||| | || |||||||| ||||||||||| ||||||||||| Sbjct: 7221 tactacagcgtacacggaacgttgataatttaacagggcaatatgtgttcttcctagg 7164 Score = 149 bits (75), Expect = 3e-32 Identities = 90/95 (94%) Strand = Plus / Minus Query: 73 ggcgagatgaacgccttcaggttcgccggcgacatgacgcacctcacgagcgtcctcgtc 132 ||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||| Sbjct: 9110 ggcgagatgaacgccttcaggctcgccggggacatgacgcacatcatgagcgtcctcgtc 9051 Query: 133 ctcctgctcaagatccacaccatcaagtcctgcgc 167 ||||||||||||||||||||||||||||| ||||| Sbjct: 9050 ctcctgctcaagatccacaccatcaagtcttgcgc 9016 Score = 97.6 bits (49), Expect = 9e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 553 gcataccgagcattctacattctcaactggatctaccgctccttcactgagccacactat 612 |||||||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct: 6223 gcataccgagcattatacatcctcaactgggcctaccgctacttcactgagccacactat 6164 Query: 613 gtacattggataa 625 || |||||||||| Sbjct: 6163 gtgcattggataa 6151 >emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15, complete sequence Length = 133413 Score = 392 bits (198), Expect = e-105 Identities = 249/266 (93%) Strand = Plus / Minus Query: 172 gtttccttgaagacacaagagttatatgctcttgttttcgtcactcgctacttggacata 231 ||||||||||| ||||| ||| |||||||||||||||||| ||||||||||||||||||| Sbjct: 128264 gtttccttgaaaacacaggagctatatgctcttgttttcgccactcgctacttggacata 128205 Query: 232 tttacagactttatatccctgtacaatacggtcatgaagctgattttcctgggtagctcg 291 |||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| Sbjct: 128204 tttacagactttatatccctatacaatacagtcatgaagatgattttcctgggtagctca 128145 Query: 292 ttctcaattgtttggtatataagacgccacaagatggtccatagatcatatgataaggat 351 ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct: 128144 ttctcaattgtttggtatataaggcgccacaagatggtccgcagatcatatgataaggat 128085 Query: 352 catgacacattccgacatcaatttcttgttctaccatgtcttctcttggccttgcttata 411 || || ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct: 128084 cacgatacatttcgacatcaatttcttgttctaccatgttttcttttggccttgcttata 128025 Query: 412 catgagaagttcactttcagggaggt 437 ||||||||||||||||| |||||||| Sbjct: 128024 catgagaagttcacttttagggaggt 127999 Score = 163 bits (82), Expect = 2e-36 Identities = 109/118 (92%) Strand = Plus / Minus Query: 434 aggtgatgtggacgttttccatttacctagaggctgttgcaattcttcctcaacttgtac 493 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 127849 aggtgatgtggacgttttccatttatctggaggctgttgcaattcttcctcaacttgtac 127790 Query: 494 tactacagcgtacaagaaacatcgacaatttaactgggcaatatgttttcttcctagg 551 |||||||||||||| | ||| | || |||||||| ||||||||||| ||||||||||| Sbjct: 127789 tactacagcgtacacggaacgttgataatttaacagggcaatatgtgttcttcctagg 127732 Score = 149 bits (75), Expect = 3e-32 Identities = 90/95 (94%) Strand = Plus / Minus Query: 73 ggcgagatgaacgccttcaggttcgccggcgacatgacgcacctcacgagcgtcctcgtc 132 ||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||| Sbjct: 129678 ggcgagatgaacgccttcaggctcgccggggacatgacgcacatcatgagcgtcctcgtc 129619 Query: 133 ctcctgctcaagatccacaccatcaagtcctgcgc 167 ||||||||||||||||||||||||||||| ||||| Sbjct: 129618 ctcctgctcaagatccacaccatcaagtcttgcgc 129584 Score = 97.6 bits (49), Expect = 9e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 553 gcataccgagcattctacattctcaactggatctaccgctccttcactgagccacactat 612 |||||||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct: 126791 gcataccgagcattatacatcctcaactgggcctaccgctacttcactgagccacactat 126732 Query: 613 gtacattggataa 625 || |||||||||| Sbjct: 126731 gtgcattggataa 126719