BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyem122k19 (1276 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|AK242918.1| Oryza sativa (japonica cultivar-group) cDNA, clo... 486 e-133 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 486 e-133 dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic D... 486 e-133 emb|CT833293.1| Oryza sativa (indica cultivar-group) cDNA clone:... 109 3e-20 gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome... 84 2e-12 >dbj|AK242918.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J090084L02, full insert sequence Length = 1441 Score = 486 bits (245), Expect = e-133 Identities = 403/454 (88%), Gaps = 15/454 (3%) Strand = Plus / Plus Query: 392 ctcaagttctgcgcgtccgagccgagcgacgccgccgcacggtacggcgcgggcaggcgc 451 |||||||||||||||||||||||||||||||||||| | ||||||||| | ||||||||| Sbjct: 436 ctcaagttctgcgcgtccgagccgagcgacgccgcctcgcggtacggctccggcaggcgc 495 Query: 452 ggcaagctgcgcgcgctcagcttcgtgtccaccaaggcctcgttctacggcggccgcgcc 511 |||||||||||| |||||||||||| |||| |||||||| |||||||||||||||||||| Sbjct: 496 ggcaagctgcgcacgctcagcttcgggtccgccaaggccgcgttctacggcggccgcgcc 555 Query: 512 agcttctcccggagctccaacagcgcgcgctcggccaggctcttcgccgcgtacgggtac 571 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct: 556 agcttctccaggagctccaacagcgcgcgctcggccaggctcttcgccgcgttcggctac 615 Query: 572 gactcgccggaccaggagga---ggccaa---gaggccaccctcgggagacgtgatcagg 625 | |||||||||||||| ||| |||||| |||| | |||||| | |||||||||||| Sbjct: 616 ggctcgccggaccagggggacgaggccaacaggaggacgccctcgcgggacgtgatcagg 675 Query: 626 cggtacctgagcaagatctccaggcggttgcggagggtggcgcccggagccgccgccgcg 685 |||||||| ||||||||||| |||| |||| |||| || ||| | ||||| |||| Sbjct: 676 cggtacctcagcaagatctcgaggcaactgcgccgggtagcccccag---cgccggcgcg 732 Query: 686 gacctccgtctacggaagagccgctcggcgtccgcggcgcagacggcggctcgcgtagct 745 |||||||| |||||||||||||| |||||||||||||||||||||||||| || Sbjct: 733 gacctccggctacggaagagccggtcggcgtccgcggcgcagacggcggcgtgc------ 786 Query: 746 cagtcgccgccgcctcgccgggacgactcgctcctcgagaagcaggacggcatcgcgagc 805 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct: 787 cagtcgccgccgcctcgccgcgacgactcgctcctcgagcagcaggacggcatcgcgagc 846 Query: 806 gccatcgcgcactgcaaggagtccctccatcgtg 839 ||||||||||||||||||||||| ||||| |||| Sbjct: 847 gccatcgcgcactgcaaggagtcgctccaccgtg 880 Score = 139 bits (70), Expect = 3e-29 Identities = 140/164 (85%), Gaps = 12/164 (7%) Strand = Plus / Plus Query: 191 ggcgaggacgagggcccgttcttcgaccttgacctgtcgtgctgctccgcc------ccc 244 ||||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||| Sbjct: 199 ggcgaggacgagggcccgttctttgacctcgacctgtcgtgctgctcggcctcggcgccc 258 Query: 245 gtgtccagcgctgagtcgggttccgagtccgaggact------cgtgcgccggcgaggtc 298 | ||| ||||| |||||||| |||||||| ||||||| |||||||||||||| Sbjct: 259 gcgtcgagcgccgagtcggggtccgagtcggaggactactcgtcgtgcgccggcgagtca 318 Query: 299 gatttcgtcatctcgctgcagcggagccgctccgcgtcgccgtc 342 || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 gacttcgtcatctcgctgcagcggagccgctccgcgtcgccgtc 362 Score = 93.7 bits (47), Expect = 2e-15 Identities = 65/71 (91%) Strand = Plus / Plus Query: 95 gtcctccggctgctcgcggcgcggcgcttccgccgccgcgccgtgtccacgatcactgcg 154 ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||| ||| Sbjct: 100 gtcctacggctgctcgcggcgcggcggttccggcgccgcgcggtgtccacgatcacggcg 159 Query: 155 acggcgacggc 165 |||||| |||| Sbjct: 160 acggcgccggc 170 >dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 486 bits (245), Expect = e-133 Identities = 403/454 (88%), Gaps = 15/454 (3%) Strand = Plus / Plus Query: 392 ctcaagttctgcgcgtccgagccgagcgacgccgccgcacggtacggcgcgggcaggcgc 451 |||||||||||||||||||||||||||||||||||| | ||||||||| | ||||||||| Sbjct: 24905196 ctcaagttctgcgcgtccgagccgagcgacgccgcctcgcggtacggctccggcaggcgc 24905255 Query: 452 ggcaagctgcgcgcgctcagcttcgtgtccaccaaggcctcgttctacggcggccgcgcc 511 |||||||||||| |||||||||||| |||| |||||||| |||||||||||||||||||| Sbjct: 24905256 ggcaagctgcgcacgctcagcttcgggtccgccaaggccgcgttctacggcggccgcgcc 24905315 Query: 512 agcttctcccggagctccaacagcgcgcgctcggccaggctcttcgccgcgtacgggtac 571 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct: 24905316 agcttctccaggagctccaacagcgcgcgctcggccaggctcttcgccgcgttcggctac 24905375 Query: 572 gactcgccggaccaggagga---ggccaa---gaggccaccctcgggagacgtgatcagg 625 | |||||||||||||| ||| |||||| |||| | |||||| | |||||||||||| Sbjct: 24905376 ggctcgccggaccagggggacgaggccaacaggaggacgccctcgcgggacgtgatcagg 24905435 Query: 626 cggtacctgagcaagatctccaggcggttgcggagggtggcgcccggagccgccgccgcg 685 |||||||| ||||||||||| |||| |||| |||| || ||| | ||||| |||| Sbjct: 24905436 cggtacctcagcaagatctcgaggcaactgcgccgggtagcccccag---cgccggcgcg 24905492 Query: 686 gacctccgtctacggaagagccgctcggcgtccgcggcgcagacggcggctcgcgtagct 745 |||||||| |||||||||||||| |||||||||||||||||||||||||| || Sbjct: 24905493 gacctccggctacggaagagccggtcggcgtccgcggcgcagacggcggcgtgc------ 24905546 Query: 746 cagtcgccgccgcctcgccgggacgactcgctcctcgagaagcaggacggcatcgcgagc 805 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct: 24905547 cagtcgccgccgcctcgccgcgacgactcgctcctcgagcagcaggacggcatcgcgagc 24905606 Query: 806 gccatcgcgcactgcaaggagtccctccatcgtg 839 ||||||||||||||||||||||| ||||| |||| Sbjct: 24905607 gccatcgcgcactgcaaggagtcgctccaccgtg 24905640 Score = 139 bits (70), Expect = 3e-29 Identities = 140/164 (85%), Gaps = 12/164 (7%) Strand = Plus / Plus Query: 191 ggcgaggacgagggcccgttcttcgaccttgacctgtcgtgctgctccgcc------ccc 244 ||||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||| Sbjct: 24904959 ggcgaggacgagggcccgttctttgacctcgacctgtcgtgctgctcggcctcggcgccc 24905018 Query: 245 gtgtccagcgctgagtcgggttccgagtccgaggact------cgtgcgccggcgaggtc 298 | ||| ||||| |||||||| |||||||| ||||||| |||||||||||||| Sbjct: 24905019 gcgtcgagcgccgagtcggggtccgagtcggaggactactcgtcgtgcgccggcgagtca 24905078 Query: 299 gatttcgtcatctcgctgcagcggagccgctccgcgtcgccgtc 342 || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 24905079 gacttcgtcatctcgctgcagcggagccgctccgcgtcgccgtc 24905122 Score = 93.7 bits (47), Expect = 2e-15 Identities = 65/71 (91%) Strand = Plus / Plus Query: 95 gtcctccggctgctcgcggcgcggcgcttccgccgccgcgccgtgtccacgatcactgcg 154 ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||| ||| Sbjct: 24904860 gtcctacggctgctcgcggcgcggcggttccggcgccgcgcggtgtccacgatcacggcg 24904919 Query: 155 acggcgacggc 165 |||||| |||| Sbjct: 24904920 acggcgccggc 24904930 >dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0501G01 Length = 154561 Score = 486 bits (245), Expect = e-133 Identities = 403/454 (88%), Gaps = 15/454 (3%) Strand = Plus / Plus Query: 392 ctcaagttctgcgcgtccgagccgagcgacgccgccgcacggtacggcgcgggcaggcgc 451 |||||||||||||||||||||||||||||||||||| | ||||||||| | ||||||||| Sbjct: 128316 ctcaagttctgcgcgtccgagccgagcgacgccgcctcgcggtacggctccggcaggcgc 128375 Query: 452 ggcaagctgcgcgcgctcagcttcgtgtccaccaaggcctcgttctacggcggccgcgcc 511 |||||||||||| |||||||||||| |||| |||||||| |||||||||||||||||||| Sbjct: 128376 ggcaagctgcgcacgctcagcttcgggtccgccaaggccgcgttctacggcggccgcgcc 128435 Query: 512 agcttctcccggagctccaacagcgcgcgctcggccaggctcttcgccgcgtacgggtac 571 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct: 128436 agcttctccaggagctccaacagcgcgcgctcggccaggctcttcgccgcgttcggctac 128495 Query: 572 gactcgccggaccaggagga---ggccaa---gaggccaccctcgggagacgtgatcagg 625 | |||||||||||||| ||| |||||| |||| | |||||| | |||||||||||| Sbjct: 128496 ggctcgccggaccagggggacgaggccaacaggaggacgccctcgcgggacgtgatcagg 128555 Query: 626 cggtacctgagcaagatctccaggcggttgcggagggtggcgcccggagccgccgccgcg 685 |||||||| ||||||||||| |||| |||| |||| || ||| | ||||| |||| Sbjct: 128556 cggtacctcagcaagatctcgaggcaactgcgccgggtagcccccag---cgccggcgcg 128612 Query: 686 gacctccgtctacggaagagccgctcggcgtccgcggcgcagacggcggctcgcgtagct 745 |||||||| |||||||||||||| |||||||||||||||||||||||||| || Sbjct: 128613 gacctccggctacggaagagccggtcggcgtccgcggcgcagacggcggcgtgc------ 128666 Query: 746 cagtcgccgccgcctcgccgggacgactcgctcctcgagaagcaggacggcatcgcgagc 805 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct: 128667 cagtcgccgccgcctcgccgcgacgactcgctcctcgagcagcaggacggcatcgcgagc 128726 Query: 806 gccatcgcgcactgcaaggagtccctccatcgtg 839 ||||||||||||||||||||||| ||||| |||| Sbjct: 128727 gccatcgcgcactgcaaggagtcgctccaccgtg 128760 Score = 139 bits (70), Expect = 3e-29 Identities = 140/164 (85%), Gaps = 12/164 (7%) Strand = Plus / Plus Query: 191 ggcgaggacgagggcccgttcttcgaccttgacctgtcgtgctgctccgcc------ccc 244 ||||||||||||||||||||||| ||||| ||||||||||||||||| ||| ||| Sbjct: 128079 ggcgaggacgagggcccgttctttgacctcgacctgtcgtgctgctcggcctcggcgccc 128138 Query: 245 gtgtccagcgctgagtcgggttccgagtccgaggact------cgtgcgccggcgaggtc 298 | ||| ||||| |||||||| |||||||| ||||||| |||||||||||||| Sbjct: 128139 gcgtcgagcgccgagtcggggtccgagtcggaggactactcgtcgtgcgccggcgagtca 128198 Query: 299 gatttcgtcatctcgctgcagcggagccgctccgcgtcgccgtc 342 || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 128199 gacttcgtcatctcgctgcagcggagccgctccgcgtcgccgtc 128242 Score = 93.7 bits (47), Expect = 2e-15 Identities = 65/71 (91%) Strand = Plus / Plus Query: 95 gtcctccggctgctcgcggcgcggcgcttccgccgccgcgccgtgtccacgatcactgcg 154 ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||| ||| Sbjct: 127980 gtcctacggctgctcgcggcgcggcggttccggcgccgcgcggtgtccacgatcacggcg 128039 Query: 155 acggcgacggc 165 |||||| |||| Sbjct: 128040 acggcgccggc 128050 >emb|CT833293.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN107E02, full insert sequence Length = 1173 Score = 109 bits (55), Expect = 3e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 767 gacgactcgctcctcgagaagcaggacggcatcgcgagcgccatcgcgcactgcaaggag 826 |||||||| || |||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 754 gacgactcccttctcgagaagcaggacggcattgccagcgccatcgcccactgcaaggag 813 Query: 827 tccctccatcgtgcgtccgtgtcggagtgcgagtcgtcg 865 || || || || ||||||||||| |||||||| |||||| Sbjct: 814 tctctgcaccgagcgtccgtgtcagagtgcgactcgtcg 852 >gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009C07, complete sequence Length = 148731 Score = 83.8 bits (42), Expect = 2e-12 Identities = 57/62 (91%) Strand = Plus / Minus Query: 767 gacgactcgctcctcgagaagcaggacggcatcgcgagcgccatcgcgcactgcaaggag 826 |||||||| || |||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct: 11769 gacgactcccttctcgagaagcaggacggcattgccagcgccatcgcccactgcaaggag 11710 Query: 827 tc 828 || Sbjct: 11709 tc 11708