BLASTN 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyem122f05
         (1069 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 
           5,422,427 sequences; 20,945,727,253 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DQ490965.1| Mutant Zea mays clone pGR25C22 disrupted DOF1 (Do...   287   5e-74
emb|X66076.1|ZMMNB1A Z.mays MNB1a mRNA for DNA-binding protein        276   2e-70
dbj|AK241364.1| Oryza sativa (japonica cultivar-group) cDNA, clo...   254   6e-64
ref|NM_001068645.1| Oryza sativa (japonica cultivar-group) Os08g...   254   6e-64
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...   254   6e-64

>gb|DQ490965.1| Mutant Zea mays clone pGR25C22 disrupted DOF1 (Dof1) gene, promoter
            region and complete cds
          Length = 12502

 Score =  287 bits (145), Expect = 5e-74
 Identities = 178/189 (94%)
 Strand = Plus / Plus

                                                                        
Query: 228  ggcggtgggggagggagagccttgcccgcggtgcgagtcgcgggacaccaagttctgcta 287
            ||||||||| ||||| || || ||||||||||||| ||||||||||||||||||||||||
Sbjct: 9071 ggcggtgggcgagggggacccgtgcccgcggtgcgcgtcgcgggacaccaagttctgcta 9130

                                                                        
Query: 288  ctacaacaactacaacacctcccaaccgcgccacttctgcaagtgctgccgccgctactg 347
            |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 9131 ctacaacaactacaacacctcccagccgcgccacttctgcaagggctgccgccgctactg 9190

                                                                        
Query: 348  gaccaagggcggcaccctccgcaacgtccccgtcggcggaggcacccgcaagaagtcctc 407
            ||||||||||||||| || |||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 9191 gaccaagggcggcacgctgcgcaacgtccccgtcggcggcggcacccgcaagaagccctc 9250

                     
Query: 408  ctcctcctc 416
            |||||||||
Sbjct: 9251 ctcctcctc 9259


>emb|X66076.1|ZMMNB1A Z.mays MNB1a mRNA for DNA-binding protein
          Length = 1225

 Score =  276 bits (139), Expect = 2e-70
 Identities = 178/191 (93%)
 Strand = Plus / Plus

                                                                       
Query: 228 ggcggtgggggagggagagccttgcccgcggtgcgagtcgcgggacaccaagttctgcta 287
           ||||||||| ||||| || || ||||||||||| | ||||||||||||||||||||||||
Sbjct: 209 ggcggtgggcgagggggacccgtgcccgcggtgtgcgtcgcgggacaccaagttctgcta 268

                                                                       
Query: 288 ctacaacaactacaacacctcccaaccgcgccacttctgcaagtgctgccgccgctactg 347
           |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 269 ctacaacaactacaacacctcccagccgcgccacttctgcaagggctgccgccgctactg 328

                                                                       
Query: 348 gaccaagggcggcaccctccgcaacgtccccgtcggcggaggcacccgcaagaagtcctc 407
           ||||||||| ||||| || |||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 329 gaccaagggtggcacgctgcgcaacgtccccgtcggcggcggcacccgcaagaagccctc 388

                      
Query: 408 ctcctcctcct 418
           |||||||||||
Sbjct: 389 ctcctcctcct 399


>dbj|AK241364.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065152E11,
           full insert sequence
          Length = 1266

 Score =  254 bits (128), Expect = 6e-64
 Identities = 167/180 (92%)
 Strand = Plus / Plus

                                                                       
Query: 228 ggcggtgggggagggagagccttgcccgcggtgcgagtcgcgggacaccaagttctgcta 287
           ||||| ||||||||| || || ||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 ggcggcgggggagggtgacccgtgcccgcggtgcgagtcgcgggacaccaaattctgcta 384

                                                                       
Query: 288 ctacaacaactacaacacctcccaaccgcgccacttctgcaagtgctgccgccgctactg 347
           |||||||||||||||||||||||| || || |||||||||||||| ||||||||||||||
Sbjct: 385 ctacaacaactacaacacctcccagccccggcacttctgcaagtgttgccgccgctactg 444

                                                                       
Query: 348 gaccaagggcggcaccctccgcaacgtccccgtcggcggaggcacccgcaagaagtcctc 407
           ||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 445 gaccaagggtggcacgctccgcaacgtccccgtcggcggcggcacgcgcaagaagtcctc 504



 Score =  113 bits (57), Expect = 1e-21
 Identities = 104/119 (87%), Gaps = 3/119 (2%)
 Strand = Plus / Plus

                                                                       
Query: 581 cgagcgagatcaccacggagctcgtggtccccgcgatggaggaggactccttcacggacc 640
           ||||||||||||||||||||||||| ||||| ||  ||||||||||||| ||||||||||
Sbjct: 738 cgagcgagatcaccacggagctcgtcgtcccggccgtggaggaggactcgttcacggacc 797

                                                                      
Query: 641 tgctgcagccggactacgacgtcgccgtcgcgctcgggctcgacttctcggactacccg 699
           | |||||||||||||    || ||||||| | ||||| ||||||||||| |||||||||
Sbjct: 798 tcctgcagccggact---ccgccgccgtcaccctcggcctcgacttctccgactacccg 853



 Score = 85.7 bits (43), Expect = 3e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                      
Query: 118 ggccgccggccggcgcagcagttcgccggcgtcgacctccgccgccccaagggctacgc 176
           |||||||||||||||||||||||||||  ||||||||| ||||| ||||||||||||||
Sbjct: 185 ggccgccggccggcgcagcagttcgccaccgtcgacctgcgccgtcccaagggctacgc 243


>ref|NM_001068645.1| Oryza sativa (japonica cultivar-group) Os08g0490100 (Os08g0490100)
           mRNA, complete cds
          Length = 1128

 Score =  254 bits (128), Expect = 6e-64
 Identities = 167/180 (92%)
 Strand = Plus / Plus

                                                                       
Query: 228 ggcggtgggggagggagagccttgcccgcggtgcgagtcgcgggacaccaagttctgcta 287
           ||||| ||||||||| || || ||||||||||||||||||||||||||||| ||||||||
Sbjct: 462 ggcggcgggggagggtgacccgtgcccgcggtgcgagtcgcgggacaccaaattctgcta 521

                                                                       
Query: 288 ctacaacaactacaacacctcccaaccgcgccacttctgcaagtgctgccgccgctactg 347
           |||||||||||||||||||||||| || || |||||||||||||| ||||||||||||||
Sbjct: 522 ctacaacaactacaacacctcccagccccggcacttctgcaagtgttgccgccgctactg 581

                                                                       
Query: 348 gaccaagggcggcaccctccgcaacgtccccgtcggcggaggcacccgcaagaagtcctc 407
           ||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 582 gaccaagggtggcacgctccgcaacgtccccgtcggcggcggcacgcgcaagaagtcctc 641



 Score =  113 bits (57), Expect = 1e-21
 Identities = 104/119 (87%), Gaps = 3/119 (2%)
 Strand = Plus / Plus

                                                                       
Query: 581 cgagcgagatcaccacggagctcgtggtccccgcgatggaggaggactccttcacggacc 640
           ||||||||||||||||||||||||| ||||| ||  ||||||||||||| ||||||||||
Sbjct: 875 cgagcgagatcaccacggagctcgtcgtcccggccgtggaggaggactcgttcacggacc 934

                                                                      
Query: 641 tgctgcagccggactacgacgtcgccgtcgcgctcgggctcgacttctcggactacccg 699
           | |||||||||||||    || ||||||| | ||||| ||||||||||| |||||||||
Sbjct: 935 tcctgcagccggact---ccgccgccgtcaccctcggcctcgacttctccgactacccg 990



 Score = 85.7 bits (43), Expect = 3e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                      
Query: 118 ggccgccggccggcgcagcagttcgccggcgtcgacctccgccgccccaagggctacgc 176
           |||||||||||||||||||||||||||  ||||||||| ||||| ||||||||||||||
Sbjct: 322 ggccgccggccggcgcagcagttcgccaccgtcgacctgcgccgtcccaagggctacgc 380


>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score =  254 bits (128), Expect = 6e-64
 Identities = 167/180 (92%)
 Strand = Plus / Plus

                                                                            
Query: 228      ggcggtgggggagggagagccttgcccgcggtgcgagtcgcgggacaccaagttctgcta 287
                ||||| ||||||||| || || ||||||||||||||||||||||||||||| ||||||||
Sbjct: 24225756 ggcggcgggggagggtgacccgtgcccgcggtgcgagtcgcgggacaccaaattctgcta 24225815

                                                                            
Query: 288      ctacaacaactacaacacctcccaaccgcgccacttctgcaagtgctgccgccgctactg 347
                |||||||||||||||||||||||| || || |||||||||||||| ||||||||||||||
Sbjct: 24225816 ctacaacaactacaacacctcccagccccggcacttctgcaagtgttgccgccgctactg 24225875

                                                                            
Query: 348      gaccaagggcggcaccctccgcaacgtccccgtcggcggaggcacccgcaagaagtcctc 407
                ||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 24225876 gaccaagggtggcacgctccgcaacgtccccgtcggcggcggcacgcgcaagaagtcctc 24225935



 Score =  113 bits (57), Expect = 1e-21
 Identities = 104/119 (87%), Gaps = 3/119 (2%)
 Strand = Plus / Plus

                                                                            
Query: 581      cgagcgagatcaccacggagctcgtggtccccgcgatggaggaggactccttcacggacc 640
                ||||||||||||||||||||||||| ||||| ||  ||||||||||||| ||||||||||
Sbjct: 24226169 cgagcgagatcaccacggagctcgtcgtcccggccgtggaggaggactcgttcacggacc 24226228

                                                                           
Query: 641      tgctgcagccggactacgacgtcgccgtcgcgctcgggctcgacttctcggactacccg 699
                | |||||||||||||    || ||||||| | ||||| ||||||||||| |||||||||
Sbjct: 24226229 tcctgcagccggact---ccgccgccgtcaccctcggcctcgacttctccgactacccg 24226284



 Score = 85.7 bits (43), Expect = 3e-13
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                           
Query: 118      ggccgccggccggcgcagcagttcgccggcgtcgacctccgccgccccaagggctacgc 176
                |||||||||||||||||||||||||||  ||||||||| ||||| ||||||||||||||
Sbjct: 24225616 ggccgccggccggcgcagcagttcgccaccgtcgacctgcgccgtcccaagggctacgc 24225674