BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyem117f13 (1203 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001062654.1| Oryza sativa (japonica cultivar-group) Os05g... 1068 0.0 dbj|AK059220.1| Oryza sativa (japonica cultivar-group) cDNA clon... 1068 0.0 gb|AY106073.1| Zea mays PCO116439 mRNA sequence 954 0.0 emb|AJ234443.1|HVU234443 Hordeum vulgare partial mRNA; clone cMW... 333 1e-87 gb|AC108499.3| Oryza sativa (japonica cultivar-group) chromosome... 272 3e-69 >ref|NM_001062654.1| Oryza sativa (japonica cultivar-group) Os05g0529000 (Os05g0529000) mRNA, complete cds Length = 1170 Score = 1068 bits (539), Expect = 0.0 Identities = 760/834 (91%), Gaps = 6/834 (0%) Strand = Plus / Plus Query: 117 cccgatgggcgacgacaagtctccgctgagcccgatgggcgaccgcgaccgcgaccggga 176 ||||||||||||||| |||||||||||||||| ||||||| ||||||||| |||||||| Sbjct: 118 cccgatgggcgacgagaagtctccgctgagccagatgggcagccgcgaccgggaccggga 177 Query: 177 gctcctcatccccgtctccggcggcggctcggcccccggtgatggagacgagggcgggga 236 ||||||||||||||||||||||||||||||||||||||| || || |||| || ||| || Sbjct: 178 gctcctcatccccgtctccggcggcggctcggcccccggagacggcgacggggacggcga 237 Query: 237 cagggccgcgtcctcctccgcctccacctccgccgcgctctcctcctccggccgcgaggc 296 |||||| || ||||||||||| ||| ||||| || ||||||||| |||||||||| Sbjct: 238 cagggcggcctcctcctccgcgtcc------gccgctctgtcctcctccagccgcgaggc 291 Query: 297 tttccataaggtggtccgcagttggacttcaaagaagttcatgactggatgtgtgattct 356 ||| |||||||||||||| |||||| |||||||||| ||||||||||||||||| ||||| Sbjct: 292 ttttcataaggtggtccgaagttgggcttcaaagaaattcatgactggatgtgtaattct 351 Query: 357 atttcccatagcaataacattctacatcacatggtggttcattcattttgttgatggatt 416 || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 352 cttccccatagcaataacattctacatcacatggtggttcattcattttgttgacggatt 411 Query: 417 cttctctccaatctatgcacaactgggaatcaacatatttggtcttggcttcatcacttc 476 |||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||| Sbjct: 412 cttctcgccaatctatgctcaactgggaatcaacatgtttggtcttggctttatcacttc 471 Query: 477 tgttactttcatacttttgattggagtcttcatgtcatcttgggttggagcatctatcct 536 |||||| |||||| || || ||||||||||||||||||||||||||||||||||| |||| Sbjct: 472 tgttaccttcatatttgtggttggagtcttcatgtcatcttgggttggagcatctgtcct 531 Query: 537 tagccttggtgagtggattattaagcgcatgccacttgtgcgtcatatctacaatgcatc 596 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 532 tagccttggtgagtggattattaagcgcatgccacttgtccgtcatatctacaatgcatc 591 Query: 597 caagcaaataagtgctgcaatatcgccagatcagaacaagcaagcgttcaaggaagtggt 656 |||||||||||||||||||||||| |||||||||||||| || || |||||||||||||| Sbjct: 592 caagcaaataagtgctgcaatatcaccagatcagaacaaacaggcattcaaggaagtggt 651 Query: 657 catcataagacatcctcgtattggagaatatgcttttggtttcattacctcatcagtctc 716 ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 652 catcataaggcatcctcgtattggagaatatgcatttggtttcattacatcatcagtctc 711 Query: 717 tctccagagctattctggtcaagaggaagtttactgcgtctatgtcccaaccaatcatct 776 ||||||||| ||| |||||||||||||| | |||||||| |||||||||||||| ||||| Sbjct: 712 tctccagagttatactggtcaagaggaactgtactgcgtgtatgtcccaaccaaccatct 771 Query: 777 ttatattggtgatatcttaatggtgaattcaaaggatgtcataaggccaaatctttctgt 836 |||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| Sbjct: 772 ttatattggtgatatcttcatggtaaattcgaaggatgttataaggccaaatctttctgt 831 Query: 837 gcgtgaaggcattgagattgttgtatctggtggcatgtcaatgccccaaatcttgtcaac 896 ||||||||||| || ||||||||||||||||||||||| ||||||||||| | ||||| Sbjct: 832 ccgtgaaggcatcgaaattgttgtatctggtggcatgtcgatgccccaaattctatcaac 891 Query: 897 ccacgatccacagacagtccttggggaaagaactggagcaagcagaagctgaga 950 | || ||||||||| | ||||| || ||||| |||||||||||||||||||| Sbjct: 892 tctggacccacagacaattcttggagacagaacaggagcaagcagaagctgaga 945 >dbj|AK059220.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D01, full insert sequence Length = 1170 Score = 1068 bits (539), Expect = 0.0 Identities = 760/834 (91%), Gaps = 6/834 (0%) Strand = Plus / Plus Query: 117 cccgatgggcgacgacaagtctccgctgagcccgatgggcgaccgcgaccgcgaccggga 176 ||||||||||||||| |||||||||||||||| ||||||| ||||||||| |||||||| Sbjct: 118 cccgatgggcgacgagaagtctccgctgagccagatgggcagccgcgaccgggaccggga 177 Query: 177 gctcctcatccccgtctccggcggcggctcggcccccggtgatggagacgagggcgggga 236 ||||||||||||||||||||||||||||||||||||||| || || |||| || ||| || Sbjct: 178 gctcctcatccccgtctccggcggcggctcggcccccggagacggcgacggggacggcga 237 Query: 237 cagggccgcgtcctcctccgcctccacctccgccgcgctctcctcctccggccgcgaggc 296 |||||| || ||||||||||| ||| ||||| || ||||||||| |||||||||| Sbjct: 238 cagggcggcctcctcctccgcgtcc------gccgctctgtcctcctccagccgcgaggc 291 Query: 297 tttccataaggtggtccgcagttggacttcaaagaagttcatgactggatgtgtgattct 356 ||| |||||||||||||| |||||| |||||||||| ||||||||||||||||| ||||| Sbjct: 292 ttttcataaggtggtccgaagttgggcttcaaagaaattcatgactggatgtgtaattct 351 Query: 357 atttcccatagcaataacattctacatcacatggtggttcattcattttgttgatggatt 416 || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 352 cttccccatagcaataacattctacatcacatggtggttcattcattttgttgacggatt 411 Query: 417 cttctctccaatctatgcacaactgggaatcaacatatttggtcttggcttcatcacttc 476 |||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||| Sbjct: 412 cttctcgccaatctatgctcaactgggaatcaacatgtttggtcttggctttatcacttc 471 Query: 477 tgttactttcatacttttgattggagtcttcatgtcatcttgggttggagcatctatcct 536 |||||| |||||| || || ||||||||||||||||||||||||||||||||||| |||| Sbjct: 472 tgttaccttcatatttgtggttggagtcttcatgtcatcttgggttggagcatctgtcct 531 Query: 537 tagccttggtgagtggattattaagcgcatgccacttgtgcgtcatatctacaatgcatc 596 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 532 tagccttggtgagtggattattaagcgcatgccacttgtccgtcatatctacaatgcatc 591 Query: 597 caagcaaataagtgctgcaatatcgccagatcagaacaagcaagcgttcaaggaagtggt 656 |||||||||||||||||||||||| |||||||||||||| || || |||||||||||||| Sbjct: 592 caagcaaataagtgctgcaatatcaccagatcagaacaaacaggcattcaaggaagtggt 651 Query: 657 catcataagacatcctcgtattggagaatatgcttttggtttcattacctcatcagtctc 716 ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 652 catcataaggcatcctcgtattggagaatatgcatttggtttcattacatcatcagtctc 711 Query: 717 tctccagagctattctggtcaagaggaagtttactgcgtctatgtcccaaccaatcatct 776 ||||||||| ||| |||||||||||||| | |||||||| |||||||||||||| ||||| Sbjct: 712 tctccagagttatactggtcaagaggaactgtactgcgtgtatgtcccaaccaaccatct 771 Query: 777 ttatattggtgatatcttaatggtgaattcaaaggatgtcataaggccaaatctttctgt 836 |||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| Sbjct: 772 ttatattggtgatatcttcatggtaaattcgaaggatgttataaggccaaatctttctgt 831 Query: 837 gcgtgaaggcattgagattgttgtatctggtggcatgtcaatgccccaaatcttgtcaac 896 ||||||||||| || ||||||||||||||||||||||| ||||||||||| | ||||| Sbjct: 832 ccgtgaaggcatcgaaattgttgtatctggtggcatgtcgatgccccaaattctatcaac 891 Query: 897 ccacgatccacagacagtccttggggaaagaactggagcaagcagaagctgaga 950 | || ||||||||| | ||||| || ||||| |||||||||||||||||||| Sbjct: 892 tctggacccacagacaattcttggagacagaacaggagcaagcagaagctgaga 945 >gb|AY106073.1| Zea mays PCO116439 mRNA sequence Length = 1274 Score = 954 bits (481), Expect = 0.0 Identities = 725/807 (89%), Gaps = 12/807 (1%) Strand = Plus / Plus Query: 142 ctgagcccgatgggcgaccgcgaccgcgaccgggagctcctcatccccgtctccggcggc 201 |||||||||||||||| |||||||| |||||||||||||||||||| ||||| |||||| Sbjct: 157 ctgagcccgatgggcgggcgcgaccgggaccgggagctcctcatcccggtctcgggcggc 216 Query: 202 ggctcggcccccggtgatggagacgagggcggggacagggccgcgtcctcctccgcctcc 261 |||||||| ||||| | | ||||||| ||||||||||| ||||||||||||| Sbjct: 217 ggctcggcgcccggcgtcgatgacgaggacggggacaggg------cctcctccgcctc- 269 Query: 262 acctccgccgcgctctcctcctccggccgcgaggctttccataaggtggtccgcagttgg 321 ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 270 -----cgcggcgctctcctcctccggccgcgaggctttccataaggtcgtccgcagttgg 324 Query: 322 acttcaaagaagttcatgactggatgtgtgattctatttcccatagcaataacattctac 381 |||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||| Sbjct: 325 gcttcaaagaagttcatgactggatgtgtaattctcttccccatagcaataacgttctac 384 Query: 382 atcacatggtggttcattcattttgttgatggattcttctctccaatctatgcacaactg 441 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 385 atcacctggtggttcattcattttgttgatggattcttctctccaatctatgctcaactg 444 Query: 442 ggaatcaacatatttggtcttggcttcatcacttctgttactttcatacttttgattgga 501 |||||||||||||| ||||||||||| |||| ||||||||||||||| ||||||| ||| Sbjct: 445 ggaatcaacatattcggtcttggctttgtcacatctgttactttcatatttttgatcgga 504 Query: 502 gtcttcatgtcatcttgggttggagcatctatccttagccttggtgagtggattattaag 561 ||||| |||||||||||| |||| |||||| ||||||||||||| ||||||||||||||| Sbjct: 505 gtctttatgtcatcttggcttggggcatctgtccttagccttggcgagtggattattaag 564 Query: 562 cgcatgccacttgtgcgtcatatctacaatgcatccaagcaaataagtgctgcaatatcg 621 |||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 565 cgcatgcctcttgttcgtcatatctacaatgcatcgaagcaaattagtgctgcaatatca 624 Query: 622 ccagatcagaacaagcaagcgttcaaggaagtggtcatcataagacatcctcgtattgga 681 |||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 625 ccagatcagaacaaacaggcgttcaaggaagtggtcatcataaggcatcctcgtgttgga 684 Query: 682 gaatatgcttttggtttcattacctcatcagtctctctccagagctattctggtcaagag 741 |||||||| ||||||||||| || || ||||| || |||||||| |||||||||||||| Sbjct: 685 gaatatgcgtttggtttcatcacatcgtcagtatccctccagagttattctggtcaagaa 744 Query: 742 gaagtttactgcgtctatgtcccaaccaatcatctttatattggtgatatcttaatggtg 801 || |||||||||||||||||||||| || |||||||| |||||||||||||| |||||| Sbjct: 745 gatctttactgcgtctatgtcccaacgaaccatctttacattggtgatatcttcatggtg 804 Query: 802 aattcaaaggatgtcataaggccaaatctttctgtgcgtgaaggcattgagattgttgta 861 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct: 805 aattcaaaggatgtcataaggccaaatctttctgtgcgtgaaggcatcgaaattgttgta 864 Query: 862 tctggtggcatgtcaatgccccaaatcttgtcaacccacgatccacagacagtccttggg 921 |||||||| ||||| ||||||||||| ||||||||| ||| || |||| |||||||| Sbjct: 865 tctggtggtatgtcgatgccccaaattctgtcaaccctcgacccgcagatgatccttggg 924 Query: 922 gaaagaactggagcaagcagaagctga 948 || ||||| ||| |||||||||||||| Sbjct: 925 gacagaaccggaccaagcagaagctga 951 >emb|AJ234443.1|HVU234443 Hordeum vulgare partial mRNA; clone cMWG0733.rev Length = 239 Score = 333 bits (168), Expect = 1e-87 Identities = 221/239 (92%) Strand = Plus / Plus Query: 337 atgactggatgtgtgattctatttcccatagcaataacattctacatcacatggtggttc 396 ||||||||||| |||||||| || |||||||| |||||||||||| |||| ||||||||| Sbjct: 1 atgactggatgcgtgattctcttccccatagcgataacattctacttcacctggtggttc 60 Query: 397 attcattttgttgatggattcttctctccaatctatgcacaactgggaatcaacatattt 456 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| Sbjct: 61 attcattttgttgatggattcttctctccaatctatgcacaattgggaatnaacattttt 120 Query: 457 ggtcttggcttcatcacttctgttactttcatacttttgattggagtcttcatgtcatct 516 ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 121 ggtcttggcttcatcacttctgttactttcatatttttcgttggagtcttcatgtcatct 180 Query: 517 tgggttggagcatctatccttagccttggtgagtggattattaagcgcatgccacttgt 575 ||||||||||||||| | ||| || ||||||| ||||| |||||||||||||||||||| Sbjct: 181 tgggttggagcatctgttcttggcattggtgaatggatcattaagcgcatgccacttgt 239 >gb|AC108499.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1187_E11, complete sequence Length = 133352 Score = 272 bits (137), Expect = 3e-69 Identities = 161/169 (95%) Strand = Plus / Minus Query: 457 ggtcttggcttcatcacttctgttactttcatacttttgattggagtcttcatgtcatct 516 ||||||||||| |||||||||||||| |||||| || || |||||||||||||||||||| Sbjct: 98664 ggtcttggctttatcacttctgttaccttcatatttgtggttggagtcttcatgtcatct 98605 Query: 517 tgggttggagcatctatccttagccttggtgagtggattattaagcgcatgccacttgtg 576 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 98604 tgggttggagcatctgtccttagccttggtgagtggattattaagcgcatgccacttgtc 98545 Query: 577 cgtcatatctacaatgcatccaagcaaataagtgctgcaatatcgccag 625 |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 98544 cgtcatatctacaatgcatccaagcaaataagtgctgcaatatcaccag 98496 Score = 176 bits (89), Expect = 1e-40 Identities = 128/141 (90%) Strand = Plus / Minus Query: 117 cccgatgggcgacgacaagtctccgctgagcccgatgggcgaccgcgaccgcgaccggga 176 ||||||||||||||| |||||||||||||||| ||||||| ||||||||| |||||||| Sbjct: 100707 cccgatgggcgacgagaagtctccgctgagccagatgggcagccgcgaccgggaccggga 100648 Query: 177 gctcctcatccccgtctccggcggcggctcggcccccggtgatggagacgagggcgggga 236 ||||||||||||||||||||||||||||||||||||||| || || |||| || ||| || Sbjct: 100647 gctcctcatccccgtctccggcggcggctcggcccccggagacggcgacggggacggcga 100588 Query: 237 cagggccgcgtcctcctccgc 257 |||||| || ||||||||||| Sbjct: 100587 cagggcggcctcctcctccgc 100567 Score = 168 bits (85), Expect = 3e-38 Identities = 106/113 (93%) Strand = Plus / Minus Query: 347 gtgtgattctatttcccatagcaataacattctacatcacatggtggttcattcattttg 406 |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 99134 gtgtaattctcttccccatagcaataacattctacatcacatggtggttcattcattttg 99075 Query: 407 ttgatggattcttctctccaatctatgcacaactgggaatcaacatatttggt 459 |||| ||||||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct: 99074 ttgacggattcttctcgccaatctatgctcaactgggaatcaacatgtttggt 99022 Score = 167 bits (84), Expect = 1e-37 Identities = 117/128 (91%) Strand = Plus / Minus Query: 721 cagagctattctggtcaagaggaagtttactgcgtctatgtcccaaccaatcatctttat 780 ||||| ||| |||||||||||||| | |||||||| |||||||||||||| ||||||||| Sbjct: 98140 cagagttatactggtcaagaggaactgtactgcgtgtatgtcccaaccaaccatctttat 98081 Query: 781 attggtgatatcttaatggtgaattcaaaggatgtcataaggccaaatctttctgtgcgt 840 |||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 98080 attggtgatatcttcatggtaaattcgaaggatgttataaggccaaatctttctgtccgt 98021 Query: 841 gaaggcat 848 |||||||| Sbjct: 98020 gaaggcat 98013 Score = 153 bits (77), Expect = 2e-33 Identities = 95/101 (94%) Strand = Plus / Minus Query: 623 cagatcagaacaagcaagcgttcaaggaagtggtcatcataagacatcctcgtattggag 682 ||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||| Sbjct: 98407 cagatcagaacaaacaggcattcaaggaagtggtcatcataaggcatcctcgtattggag 98348 Query: 683 aatatgcttttggtttcattacctcatcagtctctctccag 723 ||||||| |||||||||||||| |||||||||||||||||| Sbjct: 98347 aatatgcatttggtttcattacatcatcagtctctctccag 98307 Score = 91.7 bits (46), Expect = 6e-15 Identities = 85/98 (86%) Strand = Plus / Minus Query: 853 attgttgtatctggtggcatgtcaatgccccaaatcttgtcaacccacgatccacagaca 912 ||||||||||||||||||||||| ||||||||||| | ||||| | || ||||||||| Sbjct: 97896 attgttgtatctggtggcatgtcgatgccccaaattctatcaactctggacccacagaca 97837 Query: 913 gtccttggggaaagaactggagcaagcagaagctgaga 950 | ||||| || ||||| |||||||||||||||||||| Sbjct: 97836 attcttggagacagaacaggagcaagcagaagctgaga 97799 Score = 77.8 bits (39), Expect = 9e-11 Identities = 51/55 (92%) Strand = Plus / Minus Query: 293 aggctttccataaggtggtccgcagttggacttcaaagaagttcatgactggatg 347 ||||||| |||||||||||||| |||||| |||||||||| |||||||||||||| Sbjct: 99846 aggcttttcataaggtggtccgaagttgggcttcaaagaaattcatgactggatg 99792