BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyem113m08 (1165 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AY107666.1| Zea mays PCO145619 mRNA sequence 396 e-107 ref|NM_001060688.1| Oryza sativa (japonica cultivar-group) Os04g... 377 e-101 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 168 3e-38 emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4,... 168 3e-38 gb|AY023163.1| Oryza sativa microsatellite MRG5488 containing (G... 117 1e-22 >gb|AY107666.1| Zea mays PCO145619 mRNA sequence Length = 857 Score = 396 bits (200), Expect = e-107 Identities = 326/368 (88%) Strand = Plus / Plus Query: 394 gaggagctgggcgtgacgccgcaactcctggacttcctccggacgctctcccccgacacc 453 ||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||| || Sbjct: 127 gaggagctgggcgtgaccccgcagctcctcgacttcctccggacgctctcgcccgacgcc 186 Query: 454 ttcaagtcctccgcccaccagctccaaggaggctccgtggaggcggccacgggcgacctc 513 |||||| || |||| | ||||||||||||||||||| |||||||||| | ||||||||| Sbjct: 187 ttcaaggccgccgcactccagctccaaggaggctccacggaggcggccgccggcgacctc 246 Query: 514 accggctggcaggagcggcatgccgtgctcgtgctctccaaggctaaggaactcgccaag 573 ||| |||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| Sbjct: 247 accagctggcaggagcggcacgccgtgctcgtgctatccaaagctaaggaactcgccaag 306 Query: 574 atccggtacgatctgtgcccacgccacatgaaggataagcagttctggaggatatacttc 633 || ||||| ||||||||||| || ||| |||||||||||||||||||||||||||||||| Sbjct: 307 attcggtatgatctgtgccctcggcacctgaaggataagcagttctggaggatatacttc 366 Query: 634 ctgctcgccaagagctacacctcaccgtatgagttatgtgccatacaaaaagaaaaggta 693 |||||||||||||| |||| ||||| |||||| || |||||||||| || ||||| | Sbjct: 367 ctgctcgccaagagttacatctcacagtatgaactacgtgccatacagaaggaaaaactc 426 Query: 694 agaagaatggagacagaaaacgggaagccaaaagatgtgattactgttgaggtggagatg 753 ||| | ||||||||||||||| | |||||| || | ||||| ||||||||||||||||| Sbjct: 427 agacggatggagacagaaaactgcaagccagaacaagtgatctctgttgaggtggagatg 486 Query: 754 caagaatc 761 |||||||| Sbjct: 487 caagaatc 494 >ref|NM_001060688.1| Oryza sativa (japonica cultivar-group) Os04g0662000 (Os04g0662000) mRNA, complete cds Length = 612 Score = 377 bits (190), Expect = e-101 Identities = 283/314 (90%) Strand = Plus / Plus Query: 505 ggcgacctcaccggctggcaggagcggcatgccgtgctcgtgctctccaaggctaaggaa 564 ||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 298 ggcgaactcaccggctggcaggagcggcacgccgtgctcgtgctctccaaagccaaggaa 357 Query: 565 ctcgccaagatccggtacgatctgtgcccacgccacatgaaggataagcagttctggagg 624 | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 358 ttggccaagatccggtacgatctgtgcccgcgccacatgaaggataagcagttctggagg 417 Query: 625 atatacttcctgctcgccaagagctacacctcaccgtatgagttatgtgccatacaaaaa 684 |||||||| |||||||| ||||| ||||| || ||||||||| || | ||||||||||| Sbjct: 418 atatactttctgctcgctaagagttacacttctccgtatgagctacgagccatacaaaag 477 Query: 685 gaaaaggtaagaagaatggagacagaaaacgggaagccaaaagatgtgattactgttgag 744 || ||||||||||| |||||||||||||| |||||| |||||||||||| |||||||||| Sbjct: 478 gagaaggtaagaaggatggagacagaaaatgggaaggcaaaagatgtgactactgttgag 537 Query: 745 gtggagatgcaagaatcaaaatgcagtagaggatcgcaaacattaccggttgattcagaa 804 || |||||||||||||||||||||||||| | || ||||| ||||| | |||| |||| Sbjct: 538 gtcgagatgcaagaatcaaaatgcagtagggattctcaaacgttaccaggtgatgaagaa 597 Query: 805 tctcaagattcata 818 |||||||||||||| Sbjct: 598 tctcaagattcata 611 Score = 127 bits (64), Expect = 1e-25 Identities = 85/92 (92%) Strand = Plus / Plus Query: 391 gaggaggagctgggcgtgacgccgcaactcctggacttcctccggacgctctcccccgac 450 |||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||| Sbjct: 121 gaggaggagctgggcgtgacgccgcagctgctcgacttcctccggacgctctccccggac 180 Query: 451 accttcaagtcctccgcccaccagctccaagg 482 |||||||||||||||| | |||||||||||| Sbjct: 181 tccttcaagtcctccgcgctccagctccaagg 212 Score = 77.8 bits (39), Expect = 9e-11 Identities = 71/81 (87%), Gaps = 3/81 (3%) Strand = Plus / Plus Query: 292 atggccttctcctctttctcatggccgtttcgccgccgaggcagcggcagcggcggaggc 351 |||||||||||||||||||| |||||||| |||||||||| ||||| | ||||||||| Sbjct: 1 atggccttctcctctttctcgtggccgttccgccgccgag---gcggcggaggcggaggc 57 Query: 352 ggcccaagcaaaccccccgcc 372 ||||| |||||| || ||||| Sbjct: 58 ggcccgagcaaaacctccgcc 78 >dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 168 bits (85), Expect = 3e-38 Identities = 148/169 (87%) Strand = Plus / Plus Query: 660 gtatgagttatgtgccatacaaaaagaaaaggtaagaagaatggagacagaaaacgggaa 719 ||||||| || | ||||||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 33817449 gtatgagctacgagccatacaaaaggagaaggtaagaaggatggagacagaaaatgggaa 33817508 Query: 720 gccaaaagatgtgattactgttgaggtggagatgcaagaatcaaaatgcagtagaggatc 779 | |||||||||||| |||||||||||| |||||||||||||||||||||||||| | || Sbjct: 33817509 ggcaaaagatgtgactactgttgaggtcgagatgcaagaatcaaaatgcagtagggattc 33817568 Query: 780 gcaaacattaccggttgattcagaatctcaagattcataattaatgttg 828 ||||| ||||| | |||| |||||||||||||||||| ||| ||||| Sbjct: 33817569 tcaaacgttaccaggtgatgaagaatctcaagattcatagttagtgttg 33817617 Score = 141 bits (71), Expect = 7e-30 Identities = 89/95 (93%) Strand = Plus / Plus Query: 568 gccaagatccggtacgatctgtgcccacgccacatgaaggataagcagttctggaggata 627 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 33816447 gccaagatccggtacgatctgtgcccgcgccacatgaaggataagcagttctggaggata 33816506 Query: 628 tacttcctgctcgccaagagctacacctcaccgta 662 ||||| |||||||| ||||| ||||| || ||||| Sbjct: 33816507 tactttctgctcgctaagagttacacttctccgta 33816541 Score = 127 bits (64), Expect = 1e-25 Identities = 85/92 (92%) Strand = Plus / Plus Query: 391 gaggaggagctgggcgtgacgccgcaactcctggacttcctccggacgctctcccccgac 450 |||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||| Sbjct: 33816085 gaggaggagctgggcgtgacgccgcagctgctcgacttcctccggacgctctccccggac 33816144 Query: 451 accttcaagtcctccgcccaccagctccaagg 482 |||||||||||||||| | |||||||||||| Sbjct: 33816145 tccttcaagtcctccgcgctccagctccaagg 33816176 Score = 87.7 bits (44), Expect = 9e-14 Identities = 76/86 (88%), Gaps = 3/86 (3%) Strand = Plus / Plus Query: 287 cccctatggccttctcctctttctcatggccgtttcgccgccgaggcagcggcagcggcg 346 ||||||||||||||||||||||||| |||||||| |||||||||| ||||| | |||| Sbjct: 33815960 cccctatggccttctcctctttctcgtggccgttccgccgccgag---gcggcggaggcg 33816016 Query: 347 gaggcggcccaagcaaaccccccgcc 372 |||||||||| |||||| || ||||| Sbjct: 33816017 gaggcggcccgagcaaaacctccgcc 33816042 Score = 83.8 bits (42), Expect = 1e-12 Identities = 48/50 (96%) Strand = Plus / Plus Query: 505 ggcgacctcaccggctggcaggagcggcatgccgtgctcgtgctctccaa 554 ||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 33816279 ggcgaactcaccggctggcaggagcggcacgccgtgctcgtgctctccaa 33816328 >emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01, complete sequence Length = 163448 Score = 168 bits (85), Expect = 3e-38 Identities = 148/169 (87%) Strand = Plus / Plus Query: 660 gtatgagttatgtgccatacaaaaagaaaaggtaagaagaatggagacagaaaacgggaa 719 ||||||| || | ||||||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 29348 gtatgagctacgagccatacaaaaggagaaggtaagaaggatggagacagaaaatgggaa 29407 Query: 720 gccaaaagatgtgattactgttgaggtggagatgcaagaatcaaaatgcagtagaggatc 779 | |||||||||||| |||||||||||| |||||||||||||||||||||||||| | || Sbjct: 29408 ggcaaaagatgtgactactgttgaggtcgagatgcaagaatcaaaatgcagtagggattc 29467 Query: 780 gcaaacattaccggttgattcagaatctcaagattcataattaatgttg 828 ||||| ||||| | |||| |||||||||||||||||| ||| ||||| Sbjct: 29468 tcaaacgttaccaggtgatgaagaatctcaagattcatagttagtgttg 29516 Score = 141 bits (71), Expect = 7e-30 Identities = 89/95 (93%) Strand = Plus / Plus Query: 568 gccaagatccggtacgatctgtgcccacgccacatgaaggataagcagttctggaggata 627 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 28346 gccaagatccggtacgatctgtgcccgcgccacatgaaggataagcagttctggaggata 28405 Query: 628 tacttcctgctcgccaagagctacacctcaccgta 662 ||||| |||||||| ||||| ||||| || ||||| Sbjct: 28406 tactttctgctcgctaagagttacacttctccgta 28440 Score = 127 bits (64), Expect = 1e-25 Identities = 85/92 (92%) Strand = Plus / Plus Query: 391 gaggaggagctgggcgtgacgccgcaactcctggacttcctccggacgctctcccccgac 450 |||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||| Sbjct: 27984 gaggaggagctgggcgtgacgccgcagctgctcgacttcctccggacgctctccccggac 28043 Query: 451 accttcaagtcctccgcccaccagctccaagg 482 |||||||||||||||| | |||||||||||| Sbjct: 28044 tccttcaagtcctccgcgctccagctccaagg 28075 Score = 87.7 bits (44), Expect = 9e-14 Identities = 76/86 (88%), Gaps = 3/86 (3%) Strand = Plus / Plus Query: 287 cccctatggccttctcctctttctcatggccgtttcgccgccgaggcagcggcagcggcg 346 ||||||||||||||||||||||||| |||||||| |||||||||| ||||| | |||| Sbjct: 27859 cccctatggccttctcctctttctcgtggccgttccgccgccgag---gcggcggaggcg 27915 Query: 347 gaggcggcccaagcaaaccccccgcc 372 |||||||||| |||||| || ||||| Sbjct: 27916 gaggcggcccgagcaaaacctccgcc 27941 Score = 83.8 bits (42), Expect = 1e-12 Identities = 48/50 (96%) Strand = Plus / Plus Query: 505 ggcgacctcaccggctggcaggagcggcatgccgtgctcgtgctctccaa 554 ||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28178 ggcgaactcaccggctggcaggagcggcacgccgtgctcgtgctctccaa 28227 >gb|AY023163.1| Oryza sativa microsatellite MRG5488 containing (GCG)X8, closest to marker RM131, genomic sequence Length = 224 Score = 117 bits (59), Expect = 1e-22 Identities = 80/87 (91%) Strand = Plus / Minus Query: 391 gaggaggagctgggcgtgacgccgcaactcctggacttcctccggacgctctcccccgac 450 |||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||| Sbjct: 87 gaggaggagctgggcgtgacgccgcagctgctcgacttcctccggacgctctccccggac 28 Query: 451 accttcaagtcctccgcccaccagctc 477 |||||||||||||||| | ||||||| Sbjct: 27 tccttcaagtcctccgcgctccagctc 1 Score = 93.7 bits (47), Expect = 2e-15 Identities = 76/85 (89%), Gaps = 3/85 (3%) Strand = Plus / Minus Query: 287 cccctatggccttctcctctttctcatggccgtttcgccgccgaggcagcggcagcggcg 346 ||||||||||||||||||||||||| |||||||| |||||||||| ||||| | |||| Sbjct: 212 cccctatggccttctcctctttctcgtggccgttccgccgccgag---gcggcggaggcg 156 Query: 347 gaggcggcccaagcaaaccccccgc 371 |||||||||| ||||||||| |||| Sbjct: 155 gaggcggcccgagcaaaccctccgc 131