BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyem108k07 (1254 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NM_001048667.1| Oryza sativa (japonica cultivar-group) Os01g... 323 1e-84 emb|CT835011.1| Oryza sativa (indica cultivar-group) cDNA clone:... 315 2e-82 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 276 2e-70 dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic D... 276 2e-70 dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic D... 276 2e-70 >ref|NM_001048667.1| Oryza sativa (japonica cultivar-group) Os01g0168800 (Os01g0168800) mRNA, complete cds Length = 1011 Score = 323 bits (163), Expect = 1e-84 Identities = 214/231 (92%) Strand = Plus / Plus Query: 524 ggggaaggtggtgctgtgcgacgcggacgcggccaagggcgcggaggacgaccgggcgct 583 |||||||||||||||||||||||| ||| ||| ||||| |||||||||||| |||||| Sbjct: 510 ggggaaggtggtgctgtgcgacgccgacctggcgaagggggcggaggacgacgcggcgct 569 Query: 584 ggcggcgaagggcggcgtggcggaggtgacggagctgatggcgccggcggacagcaaggc 643 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 570 ggcggcgaagggcggcgtggcggaggtgacggagctgatggcgccggcggacgggaaggc 629 Query: 644 gctgcggcggctcatggcgctctgcgtgcaccgcccgcccaagtacatccccgagtgcct 703 | | |||||||| |||||||||||||| |||||||||||||||||||||||||| | ||| Sbjct: 630 gttccggcggctgatggcgctctgcgtccaccgcccgcccaagtacatccccgacttcct 689 Query: 704 cgtccgcgacctcctccggaaatatttcgcggaccgaagagaggagaagat 754 |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 690 cgtccgcgacctcctccggaaatatttcgcggacaaaagagaggagaagat 740 Score = 218 bits (110), Expect = 4e-53 Identities = 173/194 (89%) Strand = Plus / Plus Query: 799 ctcctctccctcaagaagttttgattatctggggagagttcgatcagattttcccagtgg 858 ||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||| |||| Sbjct: 791 ctcctctccctcaagaaattttgatcatctggggggagttcgaccagattttccctgtgg 850 Query: 859 agaaagcgcacaaagtgaaggagaagcttggggagaaggcgacggtgaagataatcccaa 918 ||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| || | Sbjct: 851 agaaagcacacaaagtgaaagagatgcttggggagaaggcgacggtgaagataataccga 910 Query: 919 acacagggcacctggcgaaccaggaggactccaagctcttcaacgagatcgtcatcaact 978 |||| |||||||||||| |||||||||| ||||| | |||||||| ||| | |||| | Sbjct: 911 acacggggcacctggcgcaccaggaggatcccaagatgttcaacgatatcctgctcaagt 970 Query: 979 tcttgctgccttct 992 |||||||||||||| Sbjct: 971 tcttgctgccttct 984 Score = 212 bits (107), Expect = 3e-51 Identities = 173/195 (88%) Strand = Plus / Plus Query: 221 gcggccggtggtggtgctcatccacggattcggccctgaccccacgtggcagtgggcgac 280 ||||||||||||||||||| |||| || ||||| || ||||| ||||||||||||| | Sbjct: 183 gcggccggtggtggtgctcgtccatggcttcgggccggacccgacgtggcagtggggcgc 242 Query: 281 gcaggtgggcccgctctcgcgccacttcgacctggtggtccccaccctcctcttcttcgg 340 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 243 gcaggtgggcccgctctcccgccacttcgacctggtggtcccgaccctcctcttcttcgg 302 Query: 341 cgcgtccaccacgcgctccccggagcgctccgacgccttccaggccgccgccgtcgccgc 400 ||| |||||||| || || || |||||||||||| |||||||| |||||| ||||||| Sbjct: 303 cgcctccaccaccagcgccgcgccgcgctccgacgcgttccaggcagccgccatcgccgc 362 Query: 401 gctcctcaccggcgg 415 |||||||||| |||| Sbjct: 363 gctcctcaccagcgg 377 >emb|CT835011.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN067N24, full insert sequence Length = 1312 Score = 315 bits (159), Expect = 2e-82 Identities = 213/231 (92%) Strand = Plus / Plus Query: 524 ggggaaggtggtgctgtgcgacgcggacgcggccaagggcgcggaggacgaccgggcgct 583 |||||||||||||||||||||||| ||| ||| ||||| |||||||||||| |||||| Sbjct: 572 ggggaaggtggtgctgtgcgacgccgacctggcgaagggggcggaggacgacgcggcgct 631 Query: 584 ggcggcgaagggcggcgtggcggaggtgacggagctgatggcgccggcggacagcaaggc 643 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 632 ggcggcgaagggcggcgtggcggaggtgacggagctgatggcgccggcggacgggaaggc 691 Query: 644 gctgcggcggctcatggcgctctgcgtgcaccgcccgcccaagtacatccccgagtgcct 703 | |||||||| |||||||||||||| |||||||||||||||||||||||||| | ||| Sbjct: 692 attccggcggctgatggcgctctgcgtccaccgcccgcccaagtacatccccgacttcct 751 Query: 704 cgtccgcgacctcctccggaaatatttcgcggaccgaagagaggagaagat 754 |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 752 cgtccgcgacctcctccggaaatatttcgcggacaaaagagaggagaagat 802 Score = 220 bits (111), Expect = 1e-53 Identities = 174/195 (89%) Strand = Plus / Plus Query: 221 gcggccggtggtggtgctcatccacggattcggccctgaccccacgtggcagtgggcgac 280 ||||||||||||||||||| |||| || ||||| || ||||| ||||||||||||| | Sbjct: 245 gcggccggtggtggtgctcgtccatggcttcgggccggacccgacgtggcagtggggcgc 304 Query: 281 gcaggtgggcccgctctcgcgccacttcgacctggtggtccccaccctcctcttcttcgg 340 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 305 gcaggtgggcccgctctcccgccacttcgacctggtggtcccgaccctcctcttcttcgg 364 Query: 341 cgcgtccaccacgcgctccccggagcgctccgacgccttccaggccgccgccgtcgccgc 400 ||| |||||||| ||| || || |||||||||||| |||||||| |||||| ||||||| Sbjct: 365 cgcctccaccacccgcgccgcgccgcgctccgacgcgttccaggcagccgccatcgccgc 424 Query: 401 gctcctcaccggcgg 415 |||||||||| |||| Sbjct: 425 gctcctcaccagcgg 439 Score = 218 bits (110), Expect = 4e-53 Identities = 173/194 (89%) Strand = Plus / Plus Query: 799 ctcctctccctcaagaagttttgattatctggggagagttcgatcagattttcccagtgg 858 ||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||| |||| Sbjct: 853 ctcctctccctcaagaaattttgatcatctggggggagttcgaccagattttccctgtgg 912 Query: 859 agaaagcgcacaaagtgaaggagaagcttggggagaaggcgacggtgaagataatcccaa 918 ||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| || | Sbjct: 913 agaaagcacacaaagtgaaagagatgcttggggagaaggcgacggtgaagataataccga 972 Query: 919 acacagggcacctggcgaaccaggaggactccaagctcttcaacgagatcgtcatcaact 978 |||| |||||||||||| |||||||||| ||||| | |||||||| ||| | |||| | Sbjct: 973 acacggggcacctggcgcaccaggaggatcccaagatgttcaacgatatcctgctcaagt 1032 Query: 979 tcttgctgccttct 992 |||||||||||||| Sbjct: 1033 tcttgctgccttct 1046 >dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 276 bits (139), Expect = 2e-70 Identities = 184/199 (92%) Strand = Plus / Minus Query: 524 ggggaaggtggtgctgtgcgacgcggacgcggccaagggcgcggaggacgaccgggcgct 583 |||||||||||||||||||||||| ||| ||| ||||| |||||||||||| |||||| Sbjct: 3517506 ggggaaggtggtgctgtgcgacgccgacctggcgaagggggcggaggacgacgcggcgct 3517447 Query: 584 ggcggcgaagggcggcgtggcggaggtgacggagctgatggcgccggcggacagcaaggc 643 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 3517446 ggcggcgaagggcggcgtggcggaggtgacggagctgatggcgccggcggacgggaaggc 3517387 Query: 644 gctgcggcggctcatggcgctctgcgtgcaccgcccgcccaagtacatccccgagtgcct 703 | | |||||||| |||||||||||||| |||||||||||||||||||||||||| | ||| Sbjct: 3517386 gttccggcggctgatggcgctctgcgtccaccgcccgcccaagtacatccccgacttcct 3517327 Query: 704 cgtccgcgacctcctccgg 722 ||||||||||||||||||| Sbjct: 3517326 cgtccgcgacctcctccgg 3517308 Score = 212 bits (107), Expect = 3e-51 Identities = 173/195 (88%) Strand = Plus / Minus Query: 221 gcggccggtggtggtgctcatccacggattcggccctgaccccacgtggcagtgggcgac 280 ||||||||||||||||||| |||| || ||||| || ||||| ||||||||||||| | Sbjct: 3517833 gcggccggtggtggtgctcgtccatggcttcgggccggacccgacgtggcagtggggcgc 3517774 Query: 281 gcaggtgggcccgctctcgcgccacttcgacctggtggtccccaccctcctcttcttcgg 340 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 3517773 gcaggtgggcccgctctcccgccacttcgacctggtggtcccgaccctcctcttcttcgg 3517714 Query: 341 cgcgtccaccacgcgctccccggagcgctccgacgccttccaggccgccgccgtcgccgc 400 ||| |||||||| || || || |||||||||||| |||||||| |||||| ||||||| Sbjct: 3517713 cgcctccaccaccagcgccgcgccgcgctccgacgcgttccaggcagccgccatcgccgc 3517654 Query: 401 gctcctcaccggcgg 415 |||||||||| |||| Sbjct: 3517653 gctcctcaccagcgg 3517639 Score = 113 bits (57), Expect = 2e-21 Identities = 96/109 (88%) Strand = Plus / Minus Query: 884 gcttggggagaaggcgacggtgaagataatcccaaacacagggcacctggcgaaccagga 943 |||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||||| Sbjct: 3516141 gcttggggagaaggcgacggtgaagataataccgaacacggggcacctggcgcaccagga 3516082 Query: 944 ggactccaagctcttcaacgagatcgtcatcaacttcttgctgccttct 992 ||| ||||| | |||||||| ||| | |||| ||||||||||||||| Sbjct: 3516081 ggatcccaagatgttcaacgatatcctgctcaagttcttgctgccttct 3516033 Score = 81.8 bits (41), Expect = 6e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 817 ttttgattatctggggagagttcgatcagattttcccagtggagaaagcgcacaaagtga 876 ||||||| |||||||| |||||||| ||||||||||| ||||||||||| |||||||||| Sbjct: 3516306 ttttgatcatctggggggagttcgaccagattttccctgtggagaaagcacacaaagtga 3516247 Query: 877 a 877 | Sbjct: 3516246 a 3516246 >dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1276_B06 Length = 175174 Score = 276 bits (139), Expect = 2e-70 Identities = 184/199 (92%) Strand = Plus / Minus Query: 524 ggggaaggtggtgctgtgcgacgcggacgcggccaagggcgcggaggacgaccgggcgct 583 |||||||||||||||||||||||| ||| ||| ||||| |||||||||||| |||||| Sbjct: 85574 ggggaaggtggtgctgtgcgacgccgacctggcgaagggggcggaggacgacgcggcgct 85515 Query: 584 ggcggcgaagggcggcgtggcggaggtgacggagctgatggcgccggcggacagcaaggc 643 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 85514 ggcggcgaagggcggcgtggcggaggtgacggagctgatggcgccggcggacgggaaggc 85455 Query: 644 gctgcggcggctcatggcgctctgcgtgcaccgcccgcccaagtacatccccgagtgcct 703 | | |||||||| |||||||||||||| |||||||||||||||||||||||||| | ||| Sbjct: 85454 gttccggcggctgatggcgctctgcgtccaccgcccgcccaagtacatccccgacttcct 85395 Query: 704 cgtccgcgacctcctccgg 722 ||||||||||||||||||| Sbjct: 85394 cgtccgcgacctcctccgg 85376 Score = 212 bits (107), Expect = 3e-51 Identities = 173/195 (88%) Strand = Plus / Minus Query: 221 gcggccggtggtggtgctcatccacggattcggccctgaccccacgtggcagtgggcgac 280 ||||||||||||||||||| |||| || ||||| || ||||| ||||||||||||| | Sbjct: 85901 gcggccggtggtggtgctcgtccatggcttcgggccggacccgacgtggcagtggggcgc 85842 Query: 281 gcaggtgggcccgctctcgcgccacttcgacctggtggtccccaccctcctcttcttcgg 340 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 85841 gcaggtgggcccgctctcccgccacttcgacctggtggtcccgaccctcctcttcttcgg 85782 Query: 341 cgcgtccaccacgcgctccccggagcgctccgacgccttccaggccgccgccgtcgccgc 400 ||| |||||||| || || || |||||||||||| |||||||| |||||| ||||||| Sbjct: 85781 cgcctccaccaccagcgccgcgccgcgctccgacgcgttccaggcagccgccatcgccgc 85722 Query: 401 gctcctcaccggcgg 415 |||||||||| |||| Sbjct: 85721 gctcctcaccagcgg 85707 Score = 113 bits (57), Expect = 2e-21 Identities = 96/109 (88%) Strand = Plus / Minus Query: 884 gcttggggagaaggcgacggtgaagataatcccaaacacagggcacctggcgaaccagga 943 |||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||||| Sbjct: 84209 gcttggggagaaggcgacggtgaagataataccgaacacggggcacctggcgcaccagga 84150 Query: 944 ggactccaagctcttcaacgagatcgtcatcaacttcttgctgccttct 992 ||| ||||| | |||||||| ||| | |||| ||||||||||||||| Sbjct: 84149 ggatcccaagatgttcaacgatatcctgctcaagttcttgctgccttct 84101 Score = 81.8 bits (41), Expect = 6e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 817 ttttgattatctggggagagttcgatcagattttcccagtggagaaagcgcacaaagtga 876 ||||||| |||||||| |||||||| ||||||||||| ||||||||||| |||||||||| Sbjct: 84374 ttttgatcatctggggggagttcgaccagattttccctgtggagaaagcacacaaagtga 84315 Query: 877 a 877 | Sbjct: 84314 a 84314 >dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028E10 Length = 140791 Score = 276 bits (139), Expect = 2e-70 Identities = 184/199 (92%) Strand = Plus / Minus Query: 524 ggggaaggtggtgctgtgcgacgcggacgcggccaagggcgcggaggacgaccgggcgct 583 |||||||||||||||||||||||| ||| ||| ||||| |||||||||||| |||||| Sbjct: 104266 ggggaaggtggtgctgtgcgacgccgacctggcgaagggggcggaggacgacgcggcgct 104207 Query: 584 ggcggcgaagggcggcgtggcggaggtgacggagctgatggcgccggcggacagcaaggc 643 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 104206 ggcggcgaagggcggcgtggcggaggtgacggagctgatggcgccggcggacgggaaggc 104147 Query: 644 gctgcggcggctcatggcgctctgcgtgcaccgcccgcccaagtacatccccgagtgcct 703 | | |||||||| |||||||||||||| |||||||||||||||||||||||||| | ||| Sbjct: 104146 gttccggcggctgatggcgctctgcgtccaccgcccgcccaagtacatccccgacttcct 104087 Query: 704 cgtccgcgacctcctccgg 722 ||||||||||||||||||| Sbjct: 104086 cgtccgcgacctcctccgg 104068 Score = 212 bits (107), Expect = 3e-51 Identities = 173/195 (88%) Strand = Plus / Minus Query: 221 gcggccggtggtggtgctcatccacggattcggccctgaccccacgtggcagtgggcgac 280 ||||||||||||||||||| |||| || ||||| || ||||| ||||||||||||| | Sbjct: 104593 gcggccggtggtggtgctcgtccatggcttcgggccggacccgacgtggcagtggggcgc 104534 Query: 281 gcaggtgggcccgctctcgcgccacttcgacctggtggtccccaccctcctcttcttcgg 340 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 104533 gcaggtgggcccgctctcccgccacttcgacctggtggtcccgaccctcctcttcttcgg 104474 Query: 341 cgcgtccaccacgcgctccccggagcgctccgacgccttccaggccgccgccgtcgccgc 400 ||| |||||||| || || || |||||||||||| |||||||| |||||| ||||||| Sbjct: 104473 cgcctccaccaccagcgccgcgccgcgctccgacgcgttccaggcagccgccatcgccgc 104414 Query: 401 gctcctcaccggcgg 415 |||||||||| |||| Sbjct: 104413 gctcctcaccagcgg 104399 Score = 113 bits (57), Expect = 2e-21 Identities = 96/109 (88%) Strand = Plus / Minus Query: 884 gcttggggagaaggcgacggtgaagataatcccaaacacagggcacctggcgaaccagga 943 |||||||||||||||||||||||||||||| || ||||| |||||||||||| ||||||| Sbjct: 102901 gcttggggagaaggcgacggtgaagataataccgaacacggggcacctggcgcaccagga 102842 Query: 944 ggactccaagctcttcaacgagatcgtcatcaacttcttgctgccttct 992 ||| ||||| | |||||||| ||| | |||| ||||||||||||||| Sbjct: 102841 ggatcccaagatgttcaacgatatcctgctcaagttcttgctgccttct 102793 Score = 81.8 bits (41), Expect = 6e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 817 ttttgattatctggggagagttcgatcagattttcccagtggagaaagcgcacaaagtga 876 ||||||| |||||||| |||||||| ||||||||||| ||||||||||| |||||||||| Sbjct: 103066 ttttgatcatctggggggagttcgaccagattttccctgtggagaaagcacacaaagtga 103007 Query: 877 a 877 | Sbjct: 103006 a 103006