BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyem105j17 (1275 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 876 0.0 gb|AY104267.1| Zea mays PCO085704 mRNA sequence 716 0.0 emb|CT829153.1| Oryza sativa (indica cultivar-group) cDNA clone:... 153 2e-33 gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome... 137 1e-28 gb|AY023245.1| Oryza sativa microsatellite MRG5570 containing (G... 78 1e-10 >dbj|AK061852.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F09, full insert sequence Length = 1415 Score = 876 bits (442), Expect = 0.0 Identities = 844/978 (86%) Strand = Plus / Plus Query: 126 gagcggcggaagggcatggcgacgcagacgggagtctccgcctccaaggtcctcatcctc 185 ||||||||| |||| ||||||| ||||||||| || || |||||||||||||||||||| Sbjct: 136 gagcggcgggaggggatggcgatgcagacggggttcgccacctccaaggtcctcatcctc 195 Query: 186 gtcagcgcaggcctgacgggctcgatcgtgctgcgaaatggccgcttgtcggatgtattg 245 ||| ||||||| ||||| |||||||||||||||| |||||||| | || || || ||| Sbjct: 196 gtcggcgcagggttgacgagctcgatcgtgctgcggaatggccggctatctgacgtgttg 255 Query: 246 gccgagctccaggagctcatgaagggcgtaaatcaaggagaaggctcgagcccctacgac 305 || ||||| |||||||| ||||| || ||||| ||||||||||| ||||| |||| ||| Sbjct: 256 gcggagcttcaggagcttatgaaaggtgtaaaccaaggagaaggttcgagtgcctatgac 315 Query: 306 attgcccttcttcaagctcagattcggaagttagcccaagaagtcagagatttaaattta 365 || |||||||||||| |||||||||| || ||||| |||||||| |||||||| | | || Sbjct: 316 atcgcccttcttcaatctcagattcgaaatttagcacaagaagttagagatttgactata 375 Query: 366 tcaaagcccattaccatattgagtggcaactctgactcaggaggcagtttatcatcttac 425 |||| ||| ||||||||||||||||||||||| ||||| |||||||||||||| || ||| Sbjct: 376 tcaaggcctattaccatattgagtggcaactccgactctggaggcagtttatcctcctac 435 Query: 426 atactgccggcagctgcagttggagcaatgggttattgctatatgtggtggaagggatgg 485 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct: 436 atactgcctgcagctgcagttggagcaatgggttactgctatatgtggtggaagggattg 495 Query: 486 tccttctcagatgtcatgtttgtgacaaaacgtaacatggccaatgctgttgagagcatg 545 ||||| || |||||||||||||| || ||||| |||||| |||| ||||||||||| ||| Sbjct: 496 tccttatcggatgtcatgtttgttaccaaacgcaacatgaccaaagctgttgagagtatg 555 Query: 546 tcaaagcaattggagcaagtgtcatcagcactagcggcaacaaaaagacatctaacccag 605 || ||||||||||| |||||||| ||||| |||| ||||||||||| ||||||| ||| Sbjct: 556 tcgaagcaattggatcaagtgtcttcagctttagctgcaacaaaaaggcatctaagtcag 615 Query: 606 cgccttgaaaatttggatgggaaaatggatgaacaagtggaggtctccaaaactattagg 665 ||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |||||| Sbjct: 616 cgcctggaaaatttagatgggaaaatggatgagcaagtggaggtctccaaaattattaga 675 Query: 666 aatgaggtcaatgatgttaatgctgacctgtgtcaaattggctttgacattgaatcaatt 725 || ||||| |||||||| || | ||| |||| ||||||||| ||||| |||| | |||| Sbjct: 676 aacgaggtgaatgatgtcaaagatgatctgtctcaaattggatttgatattgcagcaatc 735 Query: 726 caacaaatggtagctggattggaagggaagatcgagttacttgataataagcaggatgca 785 ||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct: 736 caacagatggttgctggattggaagggaagatcgagttgcttgataataaacaggatgca 795 Query: 786 actaatgctggcatatggtacctctgccaaatagcaggaggtataaaagatggaataaat 845 ||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| Sbjct: 796 actaatgctggtgtatggtacctctgccaaatagctggaggtctaaaagatggaataaat 855 Query: 846 gccaagttttttcaggaagccaatgaaaaactcaagctttcagacctggctcaatctgaa 905 |||||||||||||||||||| ||||||||||||||||| |||| ||||||| |||||| Sbjct: 856 gccaagttttttcaggaagctaatgaaaaactcaagctcacagagttggctcagtctgaa 915 Query: 906 aagaagccagtgaagggactagagttatttgtggagagcactaaggaacaaaaggtgatg 965 | ||| |||||||||| || || | || ||||||||| ||||||||||||| || Sbjct: 916 agaaaggcagtgaaggggcttgaatctgttctggagagcagaaaggaacaaaaggcaatc 975 Query: 966 ggctcgaagccgaataccatcgcacagaacgacgccaaaaagcccaagaaaacggttgat 1025 | ||| || | ||||||| ||| | |||||| |||||||| ||||||||| ||| Sbjct: 976 gactccaaacaaaataccaccgcgataattgacgccgaaaagcccgtgaaaacggtcgat 1035 Query: 1026 gcgcctgtaaagagcgccgcggtgcacaggtctagcagattctcatttcgtaaggaaagc 1085 | |||||| || |||| |||||||||||||| ||||||| |||||||||| |||||| || Sbjct: 1036 gggcctgtgaaaagcggcgcggtgcacaggtgtagcagaatctcatttcggaaggaaggc 1095 Query: 1086 ctcgctttgtgatgaaag 1103 ||||||||||||| |||| Sbjct: 1096 ctcgctttgtgatcaaag 1113 >gb|AY104267.1| Zea mays PCO085704 mRNA sequence Length = 1009 Score = 716 bits (361), Expect = 0.0 Identities = 679/785 (86%) Strand = Plus / Plus Query: 138 ggcatggcgacgcagacgggagtctccgcctccaaggtcctcatcctcgtcagcgcaggc 197 |||||||||| ||||||||| ||| | ||||||||||||||||||||||| | ||||| Sbjct: 135 ggcatggcgatgcagacgggggtcgcgacctccaaggtcctcatcctcgtcggtgcaggg 194 Query: 198 ctgacgggctcgatcgtgctgcgaaatggccgcttgtcggatgtattggccgagctccag 257 |||||||||||||| ||||||| ||||||||||| || ||||| |||| || |||||| Sbjct: 195 atgacgggctcgatcctgctgcggaatggccgcttatctgatgtgttgggagaactccag 254 Query: 258 gagctcatgaagggcgtaaatcaaggagaaggctcgagcccctacgacattgcccttctt 317 ||| | |||||||| |||||||||||| | ||| | ||||| |||||||| ||| || Sbjct: 255 gagattatgaagggtgtaaatcaaggaactgcttcgggtccctatgacattgcacttatt 314 Query: 318 caagctcagattcggaagttagcccaagaagtcagagatttaaatttatcaaagcccatt 377 ||||||||||||||||| ||||||||||||||||||||||| | || |||||||||||| Sbjct: 315 caagctcagattcggaatttagcccaagaagtcagagatttgacattgtcaaagcccatt 374 Query: 378 accatattgagtggcaactctgactcaggaggcagtttatcatcttacatactgccggca 437 |||||| ||| |||||| |||||||| ||||||||||||||||| ||||||||||| ||| Sbjct: 375 accatactgaatggcaaatctgactcgggaggcagtttatcatcctacatactgccagca 434 Query: 438 gctgcagttggagcaatgggttattgctatatgtggtggaagggatggtccttctcagat 497 || |||||||||||||||||||||||||| |||||||||||||| | ||| |||||||| Sbjct: 435 gcagcagttggagcaatgggttattgctacatgtggtggaaggggttgtctctctcagat 494 Query: 498 gtcatgtttgtgacaaaacgtaacatggccaatgctgttgagagcatgtcaaagcaattg 557 ||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||| ||| Sbjct: 495 gtcatgtttgtcacaaaacacaacatggcaaatgctgttcagagcatgtcaaagcagttg 554 Query: 558 gagcaagtgtcatcagcactagcggcaacaaaaagacatctaacccagcgccttgaaaat 617 |||||||| |||||||||||||| |||||||||||||||||||| || || ||||| ||| Sbjct: 555 gagcaagtttcatcagcactagctgcaacaaaaagacatctaactcaacggcttgagaat 614 Query: 618 ttggatgggaaaatggatgaacaagtggaggtctccaaaactattaggaatgaggtcaat 677 |||||||| ||||||||||||||||| |||||||||||| ||||||| |||||||||||| Sbjct: 615 ttggatggcaaaatggatgaacaagtagaggtctccaaagctattagaaatgaggtcaat 674 Query: 678 gatgttaatgctgacctgtgtcaaattggctttgacattgaatcaattcaacaaatggta 737 |||||||| | |||||||| ||||||||| ||||| | ||||||||||| ||||||| Sbjct: 675 gatgttaaagatgacctgtctcaaattggatttgatgtcgaatcaattcagaaaatggtt 734 Query: 738 gctggattggaagggaagatcgagttacttgataataagcaggatgcaactaatgctggc 797 ||||||||||| || ||||||||||||||||| || || ||||| | ||||| |||| Sbjct: 735 gctggattggagggaaagatcgagttacttgagaacaaacaggacgtggctaatactggt 794 Query: 798 atatggtacctctgccaaatagcaggaggtataaaagatggaataaatgccaagtttttt 857 || ||||| ||||||||| ||||||| ||| |||||||||||||||| ||| |||||| Sbjct: 795 atctggtatctctgccaagtagcaggcggtttaaaagatggaataaacaccaggtttttc 854 Query: 858 caggaagccaatgaaaaactcaagctttcagacctggctcaatctgaaaagaagccagtg 917 |||||| ||| ||| || || ||||| ||| | |||||| ||||||| ||||||||| Sbjct: 855 caggaaaccagtgagaagctgaagctctcacattcagctcaacctgaaaacaagccagtg 914 Query: 918 aaggg 922 ||||| Sbjct: 915 aaggg 919 >emb|CT829153.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN036O16, full insert sequence Length = 517 Score = 153 bits (77), Expect = 2e-33 Identities = 215/261 (82%) Strand = Plus / Plus Query: 843 aatgccaagttttttcaggaagccaatgaaaaactcaagctttcagacctggctcaatct 902 ||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| ||| Sbjct: 1 aatgccaagttttttcaggaagctaatgaaaaactcaagctcacagagttggctcagtct 60 Query: 903 gaaaagaagccagtgaagggactagagttatttgtggagagcactaaggaacaaaaggtg 962 |||| ||| |||||||||| || || | || ||||||||| ||||||||||||| Sbjct: 61 gaaagaaaggcagtgaaggggcttgaatctgttctggagagcagaaaggaacaaaaggca 120 Query: 963 atgggctcgaagccgaataccatcgcacagaacgacgccaaaaagcccaagaaaacggtt 1022 || | ||| || | ||||||| ||| | |||||| |||||||| ||||||||| Sbjct: 121 atcgactccaaacaaaataccaccgcgataattgacgccgaaaagcccgtgaaaacggtc 180 Query: 1023 gatgcgcctgtaaagagcgccgcggtgcacaggtctagcagattctcatttcgtaaggaa 1082 |||| |||||| || |||| |||||||||||||| ||||||| |||||||||| |||||| Sbjct: 181 gatgggcctgtgaaaagcggcgcggtgcacaggtgtagcagaatctcatttcggaaggaa 240 Query: 1083 agcctcgctttgtgatgaaag 1103 ||||||||||||||| |||| Sbjct: 241 ggcctcgctttgtgatcaaag 261 >gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence Length = 153351 Score = 137 bits (69), Expect = 1e-28 Identities = 81/85 (95%) Strand = Plus / Plus Query: 777 caggatgcaactaatgctggcatatggtacctctgccaaatagcaggaggtataaaagat 836 |||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| Sbjct: 53776 caggatgcaactaatgctggtgtatggtacctctgccaaatagctggaggtctaaaagat 53835 Query: 837 ggaataaatgccaagttttttcagg 861 ||||||||||||||||||||||||| Sbjct: 53836 ggaataaatgccaagttttttcagg 53860 Score = 115 bits (58), Expect = 5e-22 Identities = 70/74 (94%) Strand = Plus / Plus Query: 407 aggcagtttatcatcttacatactgccggcagctgcagttggagcaatgggttattgcta 466 |||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||| Sbjct: 51906 aggcagtttatcctcctacatactgcctgcagctgcagttggagcaatgggttactgcta 51965 Query: 467 tatgtggtggaagg 480 |||||||||||||| Sbjct: 51966 tatgtggtggaagg 51979 Score = 113 bits (57), Expect = 2e-21 Identities = 84/93 (90%) Strand = Plus / Plus Query: 581 ggcaacaaaaagacatctaacccagcgccttgaaaatttggatgggaaaatggatgaaca 640 |||||||||||| ||||||| |||||||| |||||||| ||||||||||||||||| || Sbjct: 52772 ggcaacaaaaaggcatctaagtcagcgcctggaaaatttagatgggaaaatggatgagca 52831 Query: 641 agtggaggtctccaaaactattaggaatgaggt 673 ||||||||||||||||| |||||| || ||||| Sbjct: 52832 agtggaggtctccaaaattattagaaacgaggt 52864 Score = 111 bits (56), Expect = 7e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 996 gacgccaaaaagcccaagaaaacggttgatgcgcctgtaaagagcgccgcggtgcacagg 1055 |||||| |||||||| ||||||||| |||| |||||| || |||| ||||||||||||| Sbjct: 54223 gacgccgaaaagcccgtgaaaacggtcgatgggcctgtgaaaagcggcgcggtgcacagg 54282 Query: 1056 tctagcagattctcatttcgtaaggaaagcctcgctttgtgatgaaag 1103 | ||||||| |||||||||| |||||| ||||||||||||||| |||| Sbjct: 54283 tgtagcagaatctcatttcggaaggaaggcctcgctttgtgatcaaag 54330 Score = 97.6 bits (49), Expect = 1e-16 Identities = 85/97 (87%) Strand = Plus / Plus Query: 478 agggatggtccttctcagatgtcatgtttgtgacaaaacgtaacatggccaatgctgttg 537 |||||| |||||| || |||||||||||||| || ||||| |||||| |||| ||||||| Sbjct: 52580 agggattgtccttatcggatgtcatgtttgttaccaaacgcaacatgaccaaagctgttg 52639 Query: 538 agagcatgtcaaagcaattggagcaagtgtcatcagc 574 |||| ||||| ||||||||||| |||||||| ||||| Sbjct: 52640 agagtatgtcgaagcaattggatcaagtgtcttcagc 52676 Score = 83.8 bits (42), Expect = 2e-12 Identities = 75/86 (87%) Strand = Plus / Plus Query: 324 cagattcggaagttagcccaagaagtcagagatttaaatttatcaaagcccattaccata 383 |||||||| || ||||| |||||||| |||||||| | | |||||| ||| ||||||||| Sbjct: 51343 cagattcgaaatttagcacaagaagttagagatttgactatatcaaggcctattaccata 51402 Query: 384 ttgagtggcaactctgactcaggagg 409 |||||||||||||| ||||| ||||| Sbjct: 51403 ttgagtggcaactccgactctggagg 51428 Score = 77.8 bits (39), Expect = 1e-10 Identities = 63/71 (88%) Strand = Plus / Plus Query: 126 gagcggcggaagggcatggcgacgcagacgggagtctccgcctccaaggtcctcatcctc 185 ||||||||| |||| ||||||| ||||||||| || || |||||||||||||||||||| Sbjct: 50449 gagcggcgggaggggatggcgatgcagacggggttcgccacctccaaggtcctcatcctc 50508 Query: 186 gtcagcgcagg 196 ||| ||||||| Sbjct: 50509 gtcggcgcagg 50519 >gb|AY023245.1| Oryza sativa microsatellite MRG5570 containing (GGA)X8, closest to marker C67A, genomic sequence Length = 224 Score = 77.8 bits (39), Expect = 1e-10 Identities = 63/71 (88%) Strand = Plus / Minus Query: 126 gagcggcggaagggcatggcgacgcagacgggagtctccgcctccaaggtcctcatcctc 185 ||||||||| |||| ||||||| ||||||||| || || |||||||||||||||||||| Sbjct: 217 gagcggcgggaggggatggcgatgcagacggggttcgccacctccaaggtcctcatcctc 158 Query: 186 gtcagcgcagg 196 ||| ||||||| Sbjct: 157 gtcggcgcagg 147