BLASTN 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyem002m21
         (535 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 
           5,422,427 sequences; 20,945,727,253 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NM_001073703.1| Oryza sativa (japonica cultivar-group) Os12g...   174   2e-40
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...   161   3e-36
emb|AL831797.4|CNS08CAA Oryza sativa chromosome 12, . BAC OSJNBa...   161   3e-36
gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence      109   1e-20

>ref|NM_001073703.1| Oryza sativa (japonica cultivar-group) Os12g0592200 (Os12g0592200)
           mRNA, complete cds
          Length = 309

 Score =  174 bits (88), Expect = 2e-40
 Identities = 112/120 (93%)
 Strand = Plus / Plus

                                                                       
Query: 193 cggccgcacgaccgctggcggcgatgatggggtcgccggtgacggcggcggcggtactgg 252
           |||||||||| ||||||||||||||||||||||||||| ||||| |||||||| | ||||
Sbjct: 158 cggccgcacggccgctggcggcgatgatggggtcgccgctgacgacggcggcgttgctgg 217

                                                                       
Query: 253 cgcggctgacggcgcatccggcggcgagcgcgcgggcgtgctgcgagctctcccagggta 312
           |||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 218 cgcggctgacggcgcacccggcggccagcgcgcgggcctgctgcgagctctcccagggta 277



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 57/62 (91%)
 Strand = Plus / Plus

                                                                      
Query: 36 atggcgtggcgcggcgcggcctcacgcaccgtcctcgccgccgtccgacgcccggcgccc 95
          ||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||| ||||
Sbjct: 1  atggcgtggcgcggcgccgcctcccgcaccgtcctcgcggccgtccgccgcccggggccc 60

            
Query: 96 tc 97
          ||
Sbjct: 61 tc 62


>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
          Length = 27566993

 Score =  161 bits (81), Expect = 3e-36
 Identities = 102/109 (93%)
 Strand = Plus / Plus

                                                                            
Query: 204      ccgctggcggcgatgatggggtcgccggtgacggcggcggcggtactggcgcggctgacg 263
                ||||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||||
Sbjct: 24849215 ccgctggcggcgatgatggggtcgccgctgacgacggcggcgttgctggcgcggctgacg 24849274

                                                                 
Query: 264      gcgcatccggcggcgagcgcgcgggcgtgctgcgagctctcccagggta 312
                ||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 24849275 gcgcacccggcggccagcgcgcgggcctgctgcgagctctcccagggta 24849323



 Score =  123 bits (62), Expect = 8e-25
 Identities = 125/143 (87%), Gaps = 6/143 (4%)
 Strand = Plus / Plus

                                                                            
Query: 309      ggtacttgaagttaccatgtagattcatttgtcctttggaaaaggatacaactcttcttg 368
                ||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct: 24850710 ggtacttgaagttaccatgtagattcact-gtcctttg-aaaaggatacaactcttcttg 24850767

                                                                            
Query: 369      gatgcgtcttttggaaagctattctggcgtttcatccttttaactgcaaagttagaagaa 428
                |||||||||||||||| ||| |||||| ||||    |  |||||| ||||||||||||||
Sbjct: 24850768 gatgcgtcttttggaaggctgttctggtgttt----cgattaacttcaaagttagaagaa 24850823

                                       
Query: 429      tatctccagcaatagctcctctc 451
                  |||||||  ||||||| ||||
Sbjct: 24850824 actctccagtgatagctcgtctc 24850846



 Score =  105 bits (53), Expect = 2e-19
 Identities = 68/73 (93%)
 Strand = Plus / Plus

                                                                            
Query: 25       aaaccctagccatggcgtggcgcggcgcggcctcacgcaccgtcctcgccgccgtccgac 84
                |||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |
Sbjct: 24848936 aaaccctagccatggcgtggcgcggcgccgcctcccgcaccgtcctcgcggccgtccgcc 24848995

                             
Query: 85       gcccggcgccctc 97
                |||||| ||||||
Sbjct: 24848996 gcccggggccctc 24849008


>emb|AL831797.4|CNS08CAA Oryza sativa chromosome 12, . BAC OSJNBa0010M16 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 132741

 Score =  161 bits (81), Expect = 3e-36
 Identities = 102/109 (93%)
 Strand = Plus / Minus

                                                                          
Query: 204    ccgctggcggcgatgatggggtcgccggtgacggcggcggcggtactggcgcggctgacg 263
              ||||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||||
Sbjct: 115653 ccgctggcggcgatgatggggtcgccgctgacgacggcggcgttgctggcgcggctgacg 115594

                                                               
Query: 264    gcgcatccggcggcgagcgcgcgggcgtgctgcgagctctcccagggta 312
              ||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 115593 gcgcacccggcggccagcgcgcgggcctgctgcgagctctcccagggta 115545



 Score =  123 bits (62), Expect = 8e-25
 Identities = 125/143 (87%), Gaps = 6/143 (4%)
 Strand = Plus / Minus

                                                                          
Query: 309    ggtacttgaagttaccatgtagattcatttgtcctttggaaaaggatacaactcttcttg 368
              ||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||
Sbjct: 114158 ggtacttgaagttaccatgtagattcact-gtcctttg-aaaaggatacaactcttcttg 114101

                                                                          
Query: 369    gatgcgtcttttggaaagctattctggcgtttcatccttttaactgcaaagttagaagaa 428
              |||||||||||||||| ||| |||||| ||||    |  |||||| ||||||||||||||
Sbjct: 114100 gatgcgtcttttggaaggctgttctggtgttt----cgattaacttcaaagttagaagaa 114045

                                     
Query: 429    tatctccagcaatagctcctctc 451
                |||||||  ||||||| ||||
Sbjct: 114044 actctccagtgatagctcgtctc 114022



 Score =  105 bits (53), Expect = 2e-19
 Identities = 68/73 (93%)
 Strand = Plus / Minus

                                                                          
Query: 25     aaaccctagccatggcgtggcgcggcgcggcctcacgcaccgtcctcgccgccgtccgac 84
              |||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |
Sbjct: 115932 aaaccctagccatggcgtggcgcggcgccgcctcccgcaccgtcctcgcggccgtccgcc 115873

                           
Query: 85     gcccggcgccctc 97
              |||||| ||||||
Sbjct: 115872 gcccggggccctc 115860


>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence
          Length = 204120

 Score =  109 bits (55), Expect = 1e-20
 Identities = 94/107 (87%)
 Strand = Plus / Minus

                                                                          
Query: 207    ctggcggcgatgatggggtcgccggtgacggcggcggcggtactggcgcggctgacggcg 266
              ||||||||| |||||||||| |||||||||| ||| |||||  ||||||| || ||||||
Sbjct: 179603 ctggcggcgttgatggggtccccggtgacggtggccgcggtgatggcgcgtctcacggcg 179544

                                                             
Query: 267    catccggcggcgagcgcgcgggcgtgctgcgagctctcccagggtac 313
              || || |  || |||||||||||||||||||||||||||||||||||
Sbjct: 179543 caccccggtgccagcgcgcgggcgtgctgcgagctctcccagggtac 179497