BLASTN 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyem002b18
         (465 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 
           5,422,427 sequences; 20,945,727,253 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NM_001055614.1| Oryza sativa (japonica cultivar-group) Os03g...   305   8e-80
gb|DQ244940.1| Zea mays clone 11860 mRNA sequence                     303   3e-79
emb|X82124.1|ZMRPS28 Z.mays mRNA for ribosomal protein S28            303   3e-79
gb|BT019221.1| Zea mays clone Contig894.F mRNA sequence               287   2e-74
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...   287   2e-74

>ref|NM_001055614.1| Oryza sativa (japonica cultivar-group) Os03g0167100 (Os03g0167100)
           mRNA, complete cds
          Length = 321

 Score =  305 bits (154), Expect = 8e-80
 Identities = 232/257 (90%), Gaps = 2/257 (0%)
 Strand = Plus / Plus

                                                                       
Query: 21  cgccgccgccgccgtcctc--gcgcgctcgtcggcttccgtccactcgaggaagagagca 78
           ||||||||||||| || ||  |||| |||||||||  ||| |||| |||||||  |||||
Sbjct: 65  cgccgccgccgccatcgtcttgcgccctcgtcggccgccgcccacgcgaggaaacgagca 124

                                                                       
Query: 79  tggacacccaggtgaagttggctgttgtggtgaaggtgatgggccggactggctccaggg 138
           ||||||||||||||||| ||||||||||||||||||||||||| || || ||||||||||
Sbjct: 125 tggacacccaggtgaagctggctgttgtggtgaaggtgatggggcgtaccggctccaggg 184

                                                                       
Query: 139 gtcaggtgacccaggtcagagtcaagttcttggatgaccagaaccgtctcatcatgagga 198
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtcaggtgacccaggtgagagtcaagttcttggatgaccagaaccgtctcatcatgagga 244

                                                                       
Query: 199 acgtcaagggcccggtacgtgagggtgacatcctgaccctgcttgagtctgagagagagg 258
           |||||||||||||||| || ||||| |||||||| ||| |||| ||||| ||||| ||||
Sbjct: 245 acgtcaagggcccggttcgagagggcgacatcctcaccttgctcgagtccgagagggagg 304

                            
Query: 259 ccaggaggctgcgctga 275
           |||||||||| ||||||
Sbjct: 305 ccaggaggcttcgctga 321


>gb|DQ244940.1| Zea mays clone 11860 mRNA sequence
          Length = 596

 Score =  303 bits (153), Expect = 3e-79
 Identities = 214/233 (91%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 44  gctcgtcggcttccgtccactcgaggaa-gagagcatggacacccaggtgaagttggctg 102
           |||||||||| ||||||| | |||| |  |||||||||||||||||||||||| | ||||
Sbjct: 51  gctcgtcggcctccgtccccgcgagaagcgagagcatggacacccaggtgaagcttgctg 110

                                                                       
Query: 103 ttgtggtgaaggtgatgggccggactggctccaggggtcaggtgacccaggtcagagtca 162
           ||||||||||||| |||||| |||| || ||||||||||||||||||||||||||||| |
Sbjct: 111 ttgtggtgaaggttatgggcaggaccgggtccaggggtcaggtgacccaggtcagagtga 170

                                                                       
Query: 163 agttcttggatgaccagaaccgtctcatcatgaggaacgtcaagggcccggtacgtgagg 222
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 171 agttcttggatgaccagaaccgtctcatcatgaggaacgtcaagggccctgttcgtgagg 230

                                                                
Query: 223 gtgacatcctgaccctgcttgagtctgagagagaggccaggaggctgcgctga 275
           |||||||||| |||||||| ||||||||| | |||||||||||||||||||||
Sbjct: 231 gtgacatcctcaccctgctcgagtctgagcgggaggccaggaggctgcgctga 283


>emb|X82124.1|ZMRPS28 Z.mays mRNA for ribosomal protein S28
          Length = 406

 Score =  303 bits (153), Expect = 3e-79
 Identities = 214/233 (91%), Gaps = 1/233 (0%)
 Strand = Plus / Plus

                                                                       
Query: 44  gctcgtcggcttccgtccactcgaggaa-gagagcatggacacccaggtgaagttggctg 102
           |||||||||| ||||||| | |||| |  |||||||||||||||||||||||| | ||||
Sbjct: 41  gctcgtcggcctccgtccccgcgagaagcgagagcatggacacccaggtgaagcttgctg 100

                                                                       
Query: 103 ttgtggtgaaggtgatgggccggactggctccaggggtcaggtgacccaggtcagagtca 162
           |||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |
Sbjct: 101 ttgtggtgaaagtgatgggcaggaccggctccaggggtcaggtgacccaggtcagagtga 160

                                                                       
Query: 163 agttcttggatgaccagaaccgtctcatcatgaggaacgtcaagggcccggtacgtgagg 222
           |||||||||||||||||||||||||||||||||||||||||||||| || ||  ||||||
Sbjct: 161 agttcttggatgaccagaaccgtctcatcatgaggaacgtcaagggtcctgtttgtgagg 220

                                                                
Query: 223 gtgacatcctgaccctgcttgagtctgagagagaggccaggaggctgcgctga 275
           |||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 221 gtgacatcctcaccctgctcgagtctgagagggaggccaggaggctgcgctga 273


>gb|BT019221.1| Zea mays clone Contig894.F mRNA sequence
          Length = 540

 Score =  287 bits (145), Expect = 2e-74
 Identities = 209/229 (91%), Gaps = 1/229 (0%)
 Strand = Plus / Minus

                                                                       
Query: 48  gtcggcttccgtccactcgaggaa-gagagcatggacacccaggtgaagttggctgttgt 106
           |||||||||||||||| |||| |  |||||||||||||||||||||||| | ||||||||
Sbjct: 469 gtcggcttccgtccacgcgagaagcgagagcatggacacccaggtgaagcttgctgttgt 410

                                                                       
Query: 107 ggtgaaggtgatgggccggactggctccaggggtcaggtgacccaggtcagagtcaagtt 166
           |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 409 ggtgaaggtgatgggcaggaccggctccaggggtcaggtgacccaggtcagagttaagtt 350

                                                                       
Query: 167 cttggatgaccagaaccgtctcatcatgaggaacgtcaagggcccggtacgtgagggtga 226
           |||||||||||||||||| |||||||||||||| |||||||| || || || ||||||||
Sbjct: 349 cttggatgaccagaaccggctcatcatgaggaatgtcaaggggcccgtccgcgagggtga 290

                                                            
Query: 227 catcctgaccctgcttgagtctgagagagaggccaggaggctgcgctga 275
           ||||||  ||||||| ||||| ||||| |||||||||||||||||||||
Sbjct: 289 catcctccccctgctcgagtccgagagggaggccaggaggctgcgctga 241


>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score =  287 bits (145), Expect = 2e-74
 Identities = 187/201 (93%)
 Strand = Plus / Plus

                                                                           
Query: 75      agcatggacacccaggtgaagttggctgttgtggtgaaggtgatgggccggactggctcc 134
               ||||||||||||||||||||| ||||||||||||||||||||||||| || || ||||||
Sbjct: 3612626 agcatggacacccaggtgaagctggctgttgtggtgaaggtgatggggcgtaccggctcc 3612685

                                                                           
Query: 135     aggggtcaggtgacccaggtcagagtcaagttcttggatgaccagaaccgtctcatcatg 194
               |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3612686 aggggtcaggtgacccaggtgagagtcaagttcttggatgaccagaaccgtctcatcatg 3612745

                                                                           
Query: 195     aggaacgtcaagggcccggtacgtgagggtgacatcctgaccctgcttgagtctgagaga 254
               |||||||||||||||||||| || ||||| |||||||| ||| |||| ||||| ||||| 
Sbjct: 3612746 aggaacgtcaagggcccggttcgagagggcgacatcctcaccttgctcgagtccgagagg 3612805

                                    
Query: 255     gaggccaggaggctgcgctga 275
               |||||||||||||| ||||||
Sbjct: 3612806 gaggccaggaggcttcgctga 3612826