BLASTN 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyem001b09
         (295 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 
           5,422,427 sequences; 20,945,727,253 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DQ642434.1| Zea mays RFLP probe umc90 (CBM 5.02) genomic sequ...   121   2e-24
gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence     121   2e-24
gb|AF124740.1|AF124740 Zea mays clone CCMCB76 unknown mRNA            121   2e-24
emb|AM403007.1| saccharum officinarum BAC clone 265O22, cultivar...   107   2e-20
gb|AF124045.1| Sorghum bicolor BAC clone 110K5, partial sequence      105   1e-19

>gb|DQ642434.1| Zea mays RFLP probe umc90 (CBM 5.02) genomic sequence
          Length = 1226

 Score =  121 bits (61), Expect = 2e-24
 Identities = 116/135 (85%), Gaps = 7/135 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgacccgatccctcttgagcccccaatattggataagcttataaatgcaaaattagcaaa 60
           |||||| ||||||||||||||||| ||||| |||||||| |||||||||||| |||||||
Sbjct: 36  tgacccaatccctcttgagccccccatattagataagctcataaatgcaaaactagcaaa 95

                                                                       
Query: 61  aattaaagagcgaagaccaaatatgcagtagctaatagctatgcacagattggcatcgtt 120
           |||||||||| |||  |||||||||| |       ||||||||||||||||||  |||||
Sbjct: 96  aattaaagagagaaacccaaatatgcgg-------tagctatgcacagattggtgtcgtt 148

                          
Query: 121 tactagcattcagtt 135
           |||||| ||||||||
Sbjct: 149 tactagaattcagtt 163


>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence
          Length = 213888

 Score =  121 bits (61), Expect = 2e-24
 Identities = 116/135 (85%), Gaps = 7/135 (5%)
 Strand = Plus / Minus

                                                                         
Query: 1     tgacccgatccctcttgagcccccaatattggataagcttataaatgcaaaattagcaaa 60
             |||||| ||||||||||||||||| ||||| |||||||| |||||||||||| |||||||
Sbjct: 25528 tgacccaatccctcttgagccccccatattagataagctcataaatgcaaaactagcaaa 25469

                                                                         
Query: 61    aattaaagagcgaagaccaaatatgcagtagctaatagctatgcacagattggcatcgtt 120
             |||||||||| |||  |||||||||| |       ||||||||||||||||||  |||||
Sbjct: 25468 aattaaagagagaaacccaaatatgcgg-------tagctatgcacagattggtgtcgtt 25416

                            
Query: 121   tactagcattcagtt 135
             |||||| ||||||||
Sbjct: 25415 tactagaattcagtt 25401


>gb|AF124740.1|AF124740 Zea mays clone CCMCB76 unknown mRNA
          Length = 1626

 Score =  121 bits (61), Expect = 2e-24
 Identities = 116/135 (85%), Gaps = 7/135 (5%)
 Strand = Plus / Plus

                                                                        
Query: 1    tgacccgatccctcttgagcccccaatattggataagcttataaatgcaaaattagcaaa 60
            |||||| ||||||||||||||||| ||||| |||||||| |||||||||||| |||||||
Sbjct: 954  tgacccaatccctcttgagccccccatattagataagctcataaatgcaaaactagcaaa 1013

                                                                        
Query: 61   aattaaagagcgaagaccaaatatgcagtagctaatagctatgcacagattggcatcgtt 120
            |||||||||| |||  |||||||||| |       ||||||||||||||||||  |||||
Sbjct: 1014 aattaaagagagaaacccaaatatgcgg-------tagctatgcacagattggtgtcgtt 1066

                           
Query: 121  tactagcattcagtt 135
            |||||| ||||||||
Sbjct: 1067 tactagaattcagtt 1081


>emb|AM403007.1| saccharum officinarum BAC clone 265O22, cultivar R570
          Length = 126105

 Score =  107 bits (54), Expect = 2e-20
 Identities = 84/94 (89%)
 Strand = Plus / Minus

                                                                         
Query: 1     tgacccgatccctcttgagcccccaatattggataagcttataaatgcaaaattagcaaa 60
             |||||| ||||||||||||||||| ||||| |||||||| |||||||||||| |||||||
Sbjct: 16337 tgacccaatccctcttgagccccccatattagataagctcataaatgcaaaactagcaaa 16278

                                               
Query: 61    aattaaagagcgaagaccaaatatgcagtagcta 94
             ||||||||||  ||  |||||||||| |||||||
Sbjct: 16277 aattaaagaggaaaacccaaatatgcggtagcta 16244


>gb|AF124045.1| Sorghum bicolor BAC clone 110K5, partial sequence
          Length = 78195

 Score =  105 bits (53), Expect = 1e-19
 Identities = 114/135 (84%), Gaps = 7/135 (5%)
 Strand = Plus / Minus

                                                                         
Query: 1     tgacccgatccctcttgagcccccaatattggataagcttataaatgcaaaattagcaaa 60
             |||||| ||||||||||||||||| ||||| |||||||| |||||||||||| ||| |||
Sbjct: 17786 tgacccaatccctcttgagccccccatattagataagctcataaatgcaaaactagaaaa 17727

                                                                         
Query: 61    aattaaagagcgaagaccaaatatgcagtagctaatagctatgcacagattggcatcgtt 120
             ||||||||||  ||  |||||||||| |       |||||||||||||||||| || |||
Sbjct: 17726 aattaaagaggaaaacccaaatatgcgg-------tagctatgcacagattggtatggtt 17674

                            
Query: 121   tactagcattcagtt 135
             |||||| ||||||||
Sbjct: 17673 tactagaattcagtt 17659