BLASTN 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bbasst002m10
         (457 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 
           5,422,427 sequences; 20,945,727,253 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|Z68091.1|HVCOXVCMR H.vulgare mRNA for cytochrome c (Vc subunit)   307   2e-80
ref|NM_001073553.1| Oryza sativa (japonica cultivar-group) Os12g...   297   2e-77
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...   297   2e-77
emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa...   297   2e-77
dbj|AB027123.1| Oryza sativa (japonica cultivar-group) COX5c mRN...   297   2e-77

>emb|Z68091.1|HVCOXVCMR H.vulgare mRNA for cytochrome c (Vc subunit)
          Length = 481

 Score =  307 bits (155), Expect = 2e-80
 Identities = 304/351 (86%), Gaps = 2/351 (0%)
 Strand = Plus / Plus

                                                                       
Query: 82  tttggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccct 141
           |||||||||||||| ||||||| |||| |||||||| ||||| ||||||||||| |||||
Sbjct: 77  tttggcatctgagcccaacagctagcagatggcaggcggcagagttgcacatgcgaccct 136

                                                                       
Query: 142 caagggaccaagcgtggtgaaggagatctgcattggagccacccttgggctacttgctgg 201
           |||||| || ||||||||||||||||||| |||||||  ||||||||||||  |||||||
Sbjct: 137 caaggggccgagcgtggtgaaggagatcttcattggactcacccttgggctggttgctgg 196

                                                                       
Query: 202 tggtctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacat 261
           |||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 197 tggtatgtggaagatgcatcactggaacgagcagaggaagacccgatccttctacgacat 256

                                                                       
Query: 262 gcttgagaaggggcaaatcagcgtcgtcgttgaggagtagttttgatgtataaaatctga 321
           ||| ||||||||||| ||||||||||| |||||||||||||| ||| ||    || | ||
Sbjct: 257 gctcgagaaggggcagatcagcgtcgttgttgaggagtagttctgacgtgctgaaccaga 316

                                                                       
Query: 322 agttctatatctc-aagtc-tttgcgtctttgtttttgccagttatttccaaaactctct 379
           ||||||| ||| | ||||| |||||   || | |||||||||| ||||   ||||||  |
Sbjct: 317 agttctacatcgcgaagtcttttgccatttcggttttgccagtaatttgtgaaactccgt 376

                                                              
Query: 380 ggagagcatgacaaagtgagtgccgtggagattgtcatgaaaataagcaca 430
           ||||||||||||| ||||| | | ||||||||||| |||||||||||||||
Sbjct: 377 ggagagcatgacagagtgatttctgtggagattgtaatgaaaataagcaca 427


>ref|NM_001073553.1| Oryza sativa (japonica cultivar-group) Os12g0561000 (Os12g0561000)
           mRNA, complete cds
          Length = 495

 Score =  297 bits (150), Expect = 2e-77
 Identities = 201/218 (92%)
 Strand = Plus / Plus

                                                                       
Query: 85  ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 144
           |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 55  ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 114

                                                                       
Query: 145 gggaccaagcgtggtgaaggagatctgcattggagccacccttgggctacttgctggtgg 204
           ||| || ||||||||||||||||||||||||||   ||||||||||||  | ||||||||
Sbjct: 115 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 174

                                                                       
Query: 205 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 234

                                                 
Query: 265 tgagaaggggcaaatcagcgtcgtcgttgaggagtagt 302
            |||||||| || ||||| || ||||| ||||||||||
Sbjct: 235 cgagaagggccagatcagtgttgtcgtcgaggagtagt 272



 Score =  117 bits (59), Expect = 4e-23
 Identities = 96/107 (89%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 352 tttttgccagttatttccaaaactctctggagagcatgacaaagtgagtgccgtggagat 411
           ||||||| |||||||||  |||||||||||||||||||||||||  ||||||||||||||
Sbjct: 302 tttttgcaagttatttctgaaactctctggagagcatgacaaagctagtgccgtggagat 361

                                                          
Query: 412 tgtcatg-aaaataagcacagtcatttgagaacattggatcttgttg 457
           ||||||| |||||||||| ||  ||||||||||||| ||||| ||||
Sbjct: 362 tgtcatgaaaaataagcatagcaatttgagaacatttgatctcgttg 408


>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
          Length = 27566993

 Score =  297 bits (150), Expect = 2e-77
 Identities = 201/218 (92%)
 Strand = Plus / Minus

                                                                            
Query: 85       ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 144
                |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 23003497 ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 23003438

                                                                            
Query: 145      gggaccaagcgtggtgaaggagatctgcattggagccacccttgggctacttgctggtgg 204
                ||| || ||||||||||||||||||||||||||   ||||||||||||  | ||||||||
Sbjct: 23003437 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 23003378

                                                                            
Query: 205      tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 264
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23003377 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 23003318

                                                      
Query: 265      tgagaaggggcaaatcagcgtcgtcgttgaggagtagt 302
                 |||||||| || ||||| || ||||| ||||||||||
Sbjct: 23003317 cgagaagggccagatcagtgttgtcgtcgaggagtagt 23003280



 Score =  117 bits (59), Expect = 4e-23
 Identities = 96/107 (89%), Gaps = 1/107 (0%)
 Strand = Plus / Minus

                                                                            
Query: 352      tttttgccagttatttccaaaactctctggagagcatgacaaagtgagtgccgtggagat 411
                ||||||| |||||||||  |||||||||||||||||||||||||  ||||||||||||||
Sbjct: 23003250 tttttgcaagttatttctgaaactctctggagagcatgacaaagctagtgccgtggagat 23003191

                                                               
Query: 412      tgtcatg-aaaataagcacagtcatttgagaacattggatcttgttg 457
                ||||||| |||||||||| ||  ||||||||||||| ||||| ||||
Sbjct: 23003190 tgtcatgaaaaataagcatagcaatttgagaacatttgatctcgttg 23003144


>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 155568

 Score =  297 bits (150), Expect = 2e-77
 Identities = 201/218 (92%)
 Strand = Plus / Minus

                                                                          
Query: 85     ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 144
              |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 112774 ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 112715

                                                                          
Query: 145    gggaccaagcgtggtgaaggagatctgcattggagccacccttgggctacttgctggtgg 204
              ||| || ||||||||||||||||||||||||||   ||||||||||||  | ||||||||
Sbjct: 112714 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 112655

                                                                          
Query: 205    tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 264
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112654 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 112595

                                                    
Query: 265    tgagaaggggcaaatcagcgtcgtcgttgaggagtagt 302
               |||||||| || ||||| || ||||| ||||||||||
Sbjct: 112594 cgagaagggccagatcagtgttgtcgtcgaggagtagt 112557



 Score =  117 bits (59), Expect = 4e-23
 Identities = 96/107 (89%), Gaps = 1/107 (0%)
 Strand = Plus / Minus

                                                                          
Query: 352    tttttgccagttatttccaaaactctctggagagcatgacaaagtgagtgccgtggagat 411
              ||||||| |||||||||  |||||||||||||||||||||||||  ||||||||||||||
Sbjct: 112527 tttttgcaagttatttctgaaactctctggagagcatgacaaagctagtgccgtggagat 112468

                                                             
Query: 412    tgtcatg-aaaataagcacagtcatttgagaacattggatcttgttg 457
              ||||||| |||||||||| ||  ||||||||||||| ||||| ||||
Sbjct: 112467 tgtcatgaaaaataagcatagcaatttgagaacatttgatctcgttg 112421


>dbj|AB027123.1| Oryza sativa (japonica cultivar-group) COX5c mRNA for cytochrome c
           oxidase subunit 5c, complete cds
          Length = 533

 Score =  297 bits (150), Expect = 2e-77
 Identities = 201/218 (92%)
 Strand = Plus / Plus

                                                                       
Query: 85  ggcatctgagctcaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 144
           |||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 74  ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 133

                                                                       
Query: 145 gggaccaagcgtggtgaaggagatctgcattggagccacccttgggctacttgctggtgg 204
           ||| || ||||||||||||||||||||||||||   ||||||||||||  | ||||||||
Sbjct: 134 ggggccgagcgtggtgaaggagatctgcattgggctcacccttgggctggtcgctggtgg 193

                                                                       
Query: 205 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgct 253

                                                 
Query: 265 tgagaaggggcaaatcagcgtcgtcgttgaggagtagt 302
            |||||||| || ||||| || ||||| ||||||||||
Sbjct: 254 cgagaagggccagatcagtgttgtcgtcgaggagtagt 291



 Score =  117 bits (59), Expect = 4e-23
 Identities = 96/107 (89%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 352 tttttgccagttatttccaaaactctctggagagcatgacaaagtgagtgccgtggagat 411
           ||||||| |||||||||  |||||||||||||||||||||||||  ||||||||||||||
Sbjct: 321 tttttgcaagttatttctgaaactctctggagagcatgacaaagctagtgccgtggagat 380

                                                          
Query: 412 tgtcatg-aaaataagcacagtcatttgagaacattggatcttgttg 457
           ||||||| |||||||||| ||  ||||||||||||| ||||| ||||
Sbjct: 381 tgtcatgaaaaataagcatagcaatttgagaacatttgatctcgttg 427