BLASTN 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bbasst002b06 (556 letters) Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) 5,422,427 sequences; 20,945,727,253 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|Z68091.1|HVCOXVCMR H.vulgare mRNA for cytochrome c (Vc subunit) 287 2e-74 ref|NM_001073553.1| Oryza sativa (japonica cultivar-group) Os12g... 283 4e-73 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 283 4e-73 emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa... 283 4e-73 dbj|AB027123.1| Oryza sativa (japonica cultivar-group) COX5c mRN... 283 4e-73 >emb|Z68091.1|HVCOXVCMR H.vulgare mRNA for cytochrome c (Vc subunit) Length = 481 Score = 287 bits (145), Expect = 2e-74 Identities = 300/349 (85%), Gaps = 2/349 (0%) Strand = Plus / Plus Query: 78 tttggcatctgagcttaacagcaagcaaatggcaggtggcagggttgcacatgctaccct 137 |||||||||||||| |||||| |||| |||||||| ||||| ||||||||||| ||||| Sbjct: 77 tttggcatctgagcccaacagctagcagatggcaggcggcagagttgcacatgcgaccct 136 Query: 138 caagggaccaagcgtggtgaaggagatctgcattggagctacccttgggctacttgctgg 197 |||||| || ||||||||||||||||||| ||||||| ||||||||||| ||||||| Sbjct: 137 caaggggccgagcgtggtgaaggagatcttcattggactcacccttgggctggttgctgg 196 Query: 198 tggtctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacat 257 |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 197 tggtatgtggaagatgcatcactggaacgagcagaggaagacccgatccttctacgacat 256 Query: 258 gcttgagaaggggcaaatcagcgtcgtcgttgaggagtagttttgatgtataaaatctga 317 ||| ||||||||||| ||||||||||| |||||||||||||| ||| || || | || Sbjct: 257 gctcgagaaggggcagatcagcgtcgttgttgaggagtagttctgacgtgctgaaccaga 316 Query: 318 agttctatatctc-aagtc-tttgcgtctttgtttttgccagttatttccaaaactctct 375 ||||||| ||| | ||||| ||||| || | |||||||||| |||| |||||| | Sbjct: 317 agttctacatcgcgaagtcttttgccatttcggttttgccagtaatttgtgaaactccgt 376 Query: 376 ggagagcatgacaaagtgagtgccgtggagattgtcatgaaaataagca 424 ||||||||||||| ||||| | | ||||||||||| ||||||||||||| Sbjct: 377 ggagagcatgacagagtgatttctgtggagattgtaatgaaaataagca 425 >ref|NM_001073553.1| Oryza sativa (japonica cultivar-group) Os12g0561000 (Os12g0561000) mRNA, complete cds Length = 495 Score = 283 bits (143), Expect = 4e-73 Identities = 202/219 (92%), Gaps = 2/219 (0%) Strand = Plus / Plus Query: 81 ggcatctgagcttaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 140 |||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||| Sbjct: 55 ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 114 Query: 141 gggaccaagcgtggtgaaggagatctgcattggagct-acccttgggctacttgctggtg 199 ||| || |||||||||||||||||||||||||| ||| ||||||||||| | ||||||| Sbjct: 115 ggggccgagcgtggtgaaggagatctgcattgg-gctcacccttgggctggtcgctggtg 173 Query: 200 gtctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 174 gtctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgc 233 Query: 260 ttgagaaggggcaaatcagcgtcgtcgttgaggagtagt 298 | |||||||| || ||||| || ||||| |||||||||| Sbjct: 234 tcgagaagggccagatcagtgttgtcgtcgaggagtagt 272 Score = 133 bits (67), Expect = 8e-28 Identities = 113/126 (89%), Gaps = 3/126 (2%) Strand = Plus / Plus Query: 348 tttttgccagttatttccaaaactctctggagagcatgacaaagtgagtgccgtggagat 407 ||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 302 tttttgcaagttatttctgaaactctctggagagcatgacaaagctagtgccgtggagat 361 Query: 408 tgtcatg-aaaataagc--agtcatttgagaacattggatcttgttgaatttgcttcttt 464 ||||||| ||||||||| || ||||||||||||| ||||| ||||||||||||||||| Sbjct: 362 tgtcatgaaaaataagcatagcaatttgagaacatttgatctcgttgaatttgcttcttt 421 Query: 465 ccttgt 470 ||||| Sbjct: 422 tcttgt 427 >dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 283 bits (143), Expect = 4e-73 Identities = 202/219 (92%), Gaps = 2/219 (0%) Strand = Plus / Minus Query: 81 ggcatctgagcttaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 140 |||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||| Sbjct: 23003497 ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 23003438 Query: 141 gggaccaagcgtggtgaaggagatctgcattggagct-acccttgggctacttgctggtg 199 ||| || |||||||||||||||||||||||||| ||| ||||||||||| | ||||||| Sbjct: 23003437 ggggccgagcgtggtgaaggagatctgcattgg-gctcacccttgggctggtcgctggtg 23003379 Query: 200 gtctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 23003378 gtctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgc 23003319 Query: 260 ttgagaaggggcaaatcagcgtcgtcgttgaggagtagt 298 | |||||||| || ||||| || ||||| |||||||||| Sbjct: 23003318 tcgagaagggccagatcagtgttgtcgtcgaggagtagt 23003280 Score = 133 bits (67), Expect = 8e-28 Identities = 113/126 (89%), Gaps = 3/126 (2%) Strand = Plus / Minus Query: 348 tttttgccagttatttccaaaactctctggagagcatgacaaagtgagtgccgtggagat 407 ||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 23003250 tttttgcaagttatttctgaaactctctggagagcatgacaaagctagtgccgtggagat 23003191 Query: 408 tgtcatg-aaaataagc--agtcatttgagaacattggatcttgttgaatttgcttcttt 464 ||||||| ||||||||| || ||||||||||||| ||||| ||||||||||||||||| Sbjct: 23003190 tgtcatgaaaaataagcatagcaatttgagaacatttgatctcgttgaatttgcttcttt 23003131 Query: 465 ccttgt 470 ||||| Sbjct: 23003130 tcttgt 23003125 >emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 283 bits (143), Expect = 4e-73 Identities = 202/219 (92%), Gaps = 2/219 (0%) Strand = Plus / Minus Query: 81 ggcatctgagcttaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 140 |||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||| Sbjct: 112774 ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 112715 Query: 141 gggaccaagcgtggtgaaggagatctgcattggagct-acccttgggctacttgctggtg 199 ||| || |||||||||||||||||||||||||| ||| ||||||||||| | ||||||| Sbjct: 112714 ggggccgagcgtggtgaaggagatctgcattgg-gctcacccttgggctggtcgctggtg 112656 Query: 200 gtctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112655 gtctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgc 112596 Query: 260 ttgagaaggggcaaatcagcgtcgtcgttgaggagtagt 298 | |||||||| || ||||| || ||||| |||||||||| Sbjct: 112595 tcgagaagggccagatcagtgttgtcgtcgaggagtagt 112557 Score = 133 bits (67), Expect = 8e-28 Identities = 113/126 (89%), Gaps = 3/126 (2%) Strand = Plus / Minus Query: 348 tttttgccagttatttccaaaactctctggagagcatgacaaagtgagtgccgtggagat 407 ||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 112527 tttttgcaagttatttctgaaactctctggagagcatgacaaagctagtgccgtggagat 112468 Query: 408 tgtcatg-aaaataagc--agtcatttgagaacattggatcttgttgaatttgcttcttt 464 ||||||| ||||||||| || ||||||||||||| ||||| ||||||||||||||||| Sbjct: 112467 tgtcatgaaaaataagcatagcaatttgagaacatttgatctcgttgaatttgcttcttt 112408 Query: 465 ccttgt 470 ||||| Sbjct: 112407 tcttgt 112402 >dbj|AB027123.1| Oryza sativa (japonica cultivar-group) COX5c mRNA for cytochrome c oxidase subunit 5c, complete cds Length = 533 Score = 283 bits (143), Expect = 4e-73 Identities = 202/219 (92%), Gaps = 2/219 (0%) Strand = Plus / Plus Query: 81 ggcatctgagcttaacagcaagcaaatggcaggtggcagggttgcacatgctaccctcaa 140 |||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||| Sbjct: 74 ggcatctgagctcaacagcaagcaaatggcaggtggcagaattgcacatgcgaccctcaa 133 Query: 141 gggaccaagcgtggtgaaggagatctgcattggagct-acccttgggctacttgctggtg 199 ||| || |||||||||||||||||||||||||| ||| ||||||||||| | ||||||| Sbjct: 134 ggggccgagcgtggtgaaggagatctgcattgg-gctcacccttgggctggtcgctggtg 192 Query: 200 gtctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgc 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 gtctgtggaagatgcatcactggaacgagcagaggaagactagatccttctacgacatgc 252 Query: 260 ttgagaaggggcaaatcagcgtcgtcgttgaggagtagt 298 | |||||||| || ||||| || ||||| |||||||||| Sbjct: 253 tcgagaagggccagatcagtgttgtcgtcgaggagtagt 291 Score = 133 bits (67), Expect = 8e-28 Identities = 113/126 (89%), Gaps = 3/126 (2%) Strand = Plus / Plus Query: 348 tttttgccagttatttccaaaactctctggagagcatgacaaagtgagtgccgtggagat 407 ||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 321 tttttgcaagttatttctgaaactctctggagagcatgacaaagctagtgccgtggagat 380 Query: 408 tgtcatg-aaaataagc--agtcatttgagaacattggatcttgttgaatttgcttcttt 464 ||||||| ||||||||| || ||||||||||||| ||||| ||||||||||||||||| Sbjct: 381 tgtcatgaaaaataagcatagcaatttgagaacatttgatctcgttgaatttgcttcttt 440 Query: 465 ccttgt 470 ||||| Sbjct: 441 tcttgt 446