BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst029h14
         (707 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O48609|RRP3_HORVU Plastid-specific 30S ribosomal protein 3, c...   187   5e-46
ref|NP_001052994.1| Os04g0461100 [Oryza sativa (japonica cultiva...   184   6e-45
gb|ABR25501.1| plastid-specific 30S ribosomal protein [Oryza sat...   176   2e-42
gb|ABK26571.1| unknown [Picea sitchensis] >gi|116793098|gb|ABK26...   141   4e-32
sp|P82412|RRP3_SPIOL Plastid-specific 30S ribosomal protein 3, c...   141   4e-32

>sp|O48609|RRP3_HORVU Plastid-specific 30S ribosomal protein 3, chloroplast precursor
           (PSRP-3)
 emb|CAA10984.1| hypothetical protein [Hordeum vulgare subsp. vulgare]
          Length = 181

 Score =  187 bits (475), Expect = 5e-46
 Identities = 103/172 (59%), Positives = 110/172 (63%), Gaps = 5/172 (2%)
 Frame = +1

Query: 1   PMSVHPAVTLALPLRAHLCPPKPST-SSSPRLVHFKXXXXXXXXXXXXXXXXXXXXXXXX 177
           PMSVHPA T AL  R  +  P+PST SSS  LVH K                        
Sbjct: 3   PMSVHPATTPALASRPRVSLPRPSTPSSSSSLVHLKSRRPPLRSLRSLTAAAAAAAVEAG 62

Query: 178 XXXXXXXXXXXXXXXXXFVGV----EYKVEVPERKDPMPVLKFIWMEKNIGIALDQMIPG 345
                               V    EYKVEVPE++DPM VLKFIWMEKNIGIALDQM+PG
Sbjct: 63  EPYFGLGDDEPLGGEGDAEAVVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPG 122

Query: 346 YGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQIVILLNQATDIINLWQQ 501
            GSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQ++ILLNQATDIINLWQQ
Sbjct: 123 VGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQ 174


>ref|NP_001052994.1| Os04g0461100 [Oryza sativa (japonica cultivar-group)]
 emb|CAD40987.2| OSJNBa0072F16.12 [Oryza sativa (japonica cultivar-group)]
 dbj|BAF14908.1| Os04g0461100 [Oryza sativa (japonica cultivar-group)]
 emb|CAH67455.1| H0219H12.12 [Oryza sativa (indica cultivar-group)]
 gb|EAY94407.1| hypothetical protein OsI_015640 [Oryza sativa (indica
           cultivar-group)]
 gb|EAZ30981.1| hypothetical protein OsJ_014464 [Oryza sativa (japonica
           cultivar-group)]
          Length = 183

 Score =  184 bits (466), Expect = 6e-45
 Identities = 101/174 (58%), Positives = 110/174 (63%), Gaps = 8/174 (4%)
 Frame = +1

Query: 4   MSVHPAVTLALPLRAHLCPPK--------PSTSSSPRLVHFKXXXXXXXXXXXXXXXXXX 159
           MSVHPA T AL  RA +  PK         S+SS+PRLVH                    
Sbjct: 4   MSVHPAATPALASRARISRPKLSAASPCTTSSSSTPRLVHLGSRRLPLRSLRGLAAAAAS 63

Query: 160 XXXXXXXXXXXXXXXXXXXXXXXFVGVEYKVEVPERKDPMPVLKFIWMEKNIGIALDQMI 339
                                      EYKV+VPER+DPM VLKFIWMEKNIGIALDQ++
Sbjct: 64  GAVEAEEGEEEKQVGGGDASAGE-EAQEYKVKVPERQDPMLVLKFIWMEKNIGIALDQLV 122

Query: 340 PGYGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQIVILLNQATDIINLWQQ 501
           PGYGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQ++ILLNQATDIINLWQQ
Sbjct: 123 PGYGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQ 176


>gb|ABR25501.1| plastid-specific 30S ribosomal protein [Oryza sativa (indica
           cultivar-group)]
          Length = 176

 Score =  176 bits (445), Expect = 2e-42
 Identities = 97/170 (57%), Positives = 106/170 (62%), Gaps = 8/170 (4%)
 Frame = +1

Query: 16  PAVTLALPLRAHLCPPK--------PSTSSSPRLVHFKXXXXXXXXXXXXXXXXXXXXXX 171
           PA T AL  RA +  PK         S+SS+PRLVH                        
Sbjct: 1   PAATPALASRARISRPKLSAASPCTTSSSSTPRLVHLGSRRLPLRSLRGLAAAAASGAVE 60

Query: 172 XXXXXXXXXXXXXXXXXXXFVGVEYKVEVPERKDPMPVLKFIWMEKNIGIALDQMIPGYG 351
                                  EYKV+VPER+DPM VLKFIWMEKNIGIALDQ++PGYG
Sbjct: 61  AEEGEEEKQVGGGDASAGE-EAQEYKVKVPERQDPMLVLKFIWMEKNIGIALDQLVPGYG 119

Query: 352 SIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQIVILLNQATDIINLWQQ 501
           SIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQ++ILLNQATDIINLWQQ
Sbjct: 120 SIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQ 169


>gb|ABK26571.1| unknown [Picea sitchensis]
 gb|ABK26613.1| unknown [Picea sitchensis]
          Length = 211

 Score =  141 bits (355), Expect = 4e-32
 Identities = 64/85 (75%), Positives = 74/85 (87%)
 Frame = +1

Query: 247 KVEVPERKDPMPVLKFIWMEKNIGIALDQMIPGYGSIPLSPYYFWPRKDAWEELRAKLEE 426
           KV V   +    VLKFIW+EKNIG+ALDQ++PG+G+IPLSPYYFWPRKDAWEEL+AKLE 
Sbjct: 122 KVVVKAPRKQRIVLKFIWLEKNIGLALDQVVPGHGTIPLSPYYFWPRKDAWEELKAKLES 181

Query: 427 KEWISQKQIVILLNQATDIINLWQQ 501
           K WISQK+ +ILLNQATDIINLWQQ
Sbjct: 182 KSWISQKRTIILLNQATDIINLWQQ 206


>sp|P82412|RRP3_SPIOL Plastid-specific 30S ribosomal protein 3, chloroplast precursor
           (PSRP-3)
 gb|AAF64163.1|AF239218_1 plastid-specific ribosomal protein 3 precursor [Spinacia oleracea]
          Length = 179

 Score =  141 bits (355), Expect = 4e-32
 Identities = 65/85 (76%), Positives = 72/85 (84%)
 Frame = +1

Query: 247 KVEVPERKDPMPVLKFIWMEKNIGIALDQMIPGYGSIPLSPYYFWPRKDAWEELRAKLEE 426
           KV V     P  VLKFIWMEKNIG+ALDQ IPG+G++PLSPYYFWPRKDAWEEL+  LE 
Sbjct: 88  KVLVKPMDKPRLVLKFIWMEKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLEN 147

Query: 427 KEWISQKQIVILLNQATDIINLWQQ 501
           K WISQKQ++ILLNQATDIINLWQQ
Sbjct: 148 KPWISQKQMIILLNQATDIINLWQQ 172