BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst027o13
         (854 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABB47665.1| retrotransposon protein, putative, unclassified, ...    74   2e-11

>gb|ABB47665.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa (japonica cultivar-group)]
 gb|ABB47666.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa (japonica cultivar-group)]
          Length = 1682

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 58/154 (37%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
 Frame = +2

Query: 143 GIEGTLP----RSSDPKSVATPEDSKDSCFGFILDSMVAEHATSSVELLSETRAPEDGGA 310
           GI G  P     S    S  TP  S+     +ILDS  + H +     L+  R  ++G A
Sbjct: 157 GILGPYPCAGIASCSSISTVTPIASQP----WILDSGASFHMSFDDSWLTSCRLVKNG-A 211

Query: 311 SFRSRFGRDLPVVAVGSINTPHFAIPDVRLVPELGTGSTLISVGQLASQGLVVTFCSDSC 490
           +  +  G    V   GSI++P F +P+V LVP+L     LISVGQL      V F   SC
Sbjct: 212 TVHTANGTLCKVTHQGSISSPQFTVPNVSLVPKLSMN--LISVGQLTDTNCFVGFDDTSC 269

Query: 491 HIMELSTGAVVGEG-RPREQDGLYHLDFLSVPQS 589
            + +  TGAV+G G R +   GLY LD LS+P S
Sbjct: 270 FVQDRHTGAVIGTGHRQKRSCGLYILDSLSLPSS 303