BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst025a24
         (636 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001044909.1| Os01g0866700 [Oryza sativa (japonica cultiva...   187   3e-46
ref|NP_177812.1| small nuclear ribonucleoprotein, putative / snR...   177   4e-43
dbj|BAE99397.1| hypothetical protein [Arabidopsis thaliana]           172   1e-41
ref|NP_173542.1| small nuclear ribonucleoprotein, putative / snR...   172   1e-41
gb|EDQ80158.1| predicted protein [Physcomitrella patens subsp. p...   170   5e-41

>ref|NP_001044909.1| Os01g0866700 [Oryza sativa (japonica cultivar-group)]
 dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza sativa (japonica
           cultivar-group)]
 dbj|BAF06823.1| Os01g0866700 [Oryza sativa (japonica cultivar-group)]
 gb|EAY76611.1| hypothetical protein OsI_004458 [Oryza sativa (indica
           cultivar-group)]
 gb|EAZ14276.1| hypothetical protein OsJ_004101 [Oryza sativa (japonica
           cultivar-group)]
          Length = 104

 Score =  187 bits (476), Expect = 3e-46
 Identities = 96/99 (96%), Positives = 97/99 (97%)
 Frame = +1

Query: 85  AMASAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEETVTT 264
           A A+AEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE VTT
Sbjct: 6   AAAAAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTT 65

Query: 265 VEIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 381
           VEIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA
Sbjct: 66  VEIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 104


>ref|NP_177812.1| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm
           protein, putative [Arabidopsis thaliana]
 gb|AAG51149.1|AC079283_6 Sm-like protein [Arabidopsis thaliana]
 gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana]
 gb|ABF58993.1| At1g76860 [Arabidopsis thaliana]
          Length = 98

 Score =  177 bits (449), Expect = 4e-43
 Identities = 89/96 (92%), Positives = 92/96 (95%)
 Frame = +1

Query: 94  SAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEETVTTVEI 273
           S EEE  V+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILGDVEET+TTVEI
Sbjct: 2   SGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEI 61

Query: 274 DDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 381
           DDETYEEIVRTTKRTI FLFVRGDGVILVSPPLRTA
Sbjct: 62  DDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRTA 97


>dbj|BAE99397.1| hypothetical protein [Arabidopsis thaliana]
          Length = 96

 Score =  172 bits (437), Expect = 1e-41
 Identities = 83/95 (87%), Positives = 91/95 (95%)
 Frame = +1

Query: 94  SAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEETVTTVEI 273
           S EE+  V+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TT+EI
Sbjct: 1   SVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 60

Query: 274 DDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRT 378
           DDETYEEIVRTTKRT+PFLFVRGDGVILVSPPLRT
Sbjct: 61  DDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 95


>ref|NP_173542.1| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm
           protein, putative [Arabidopsis thaliana]
 gb|AAF81363.1|AC036104_12 Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095
           and contains a conserved Sm protein PF|01423 motif.  EST
           gb|AI998441 comes from this gene. [Arabidopsis thaliana]
 gb|AAG50100.1|AF334722_1 unknown protein [Arabidopsis thaliana]
          Length = 97

 Score =  172 bits (437), Expect = 1e-41
 Identities = 83/95 (87%), Positives = 91/95 (95%)
 Frame = +1

Query: 94  SAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEETVTTVEI 273
           S EE+  V+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILGDVEE +TT+EI
Sbjct: 2   SVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 61

Query: 274 DDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRT 378
           DDETYEEIVRTTKRT+PFLFVRGDGVILVSPPLRT
Sbjct: 62  DDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96


>gb|EDQ80158.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 97

 Score =  170 bits (431), Expect = 5e-41
 Identities = 83/96 (86%), Positives = 92/96 (95%)
 Frame = +1

Query: 94  SAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEETVTTVEI 273
           + EE+ AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG+VEE  T+VEI
Sbjct: 2   ATEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGEVEEVTTSVEI 61

Query: 274 DDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 381
           DDETYEEIVRT++RT+P+LFVRGDGVILVSPPLRT+
Sbjct: 62  DDETYEEIVRTSRRTVPYLFVRGDGVILVSPPLRTS 97