BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst018b24
         (1525 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAC99390.1| putative U3 snoRNP protein IMP4 [Oryza sativa (j...   221   e-115
emb|CAN61017.1| hypothetical protein [Vitis vinifera] >gi|157359...   234   e-111
gb|ABK93432.1| unknown [Populus trichocarpa]                          214   e-103
gb|EDQ52410.1| predicted protein [Physcomitrella patens subsp. p...   214   e-101
ref|NP_176564.1| IMP4 [Arabidopsis thaliana] >gi|12324948|gb|AAG...   216   3e-98

>dbj|BAC99390.1| putative U3 snoRNP protein IMP4 [Oryza sativa (japonica
            cultivar-group)]
          Length = 293

 Score =  221 bits (562), Expect(2) = e-115
 Identities = 107/122 (87%), Positives = 114/122 (93%)
 Frame = +1

Query: 661  KVVSEIVESCSSHEITDLILVHEHRGQPDGLIVCHLPFGPTA*FGLLNVVTRHDIEDRKA 840
            +V+SEIVESC SH+ITDL+LVHEHRGQPDGLIVCHLPFGPTA FGLLNVVTRHDI+DRKA
Sbjct: 119  QVISEIVESCRSHDITDLVLVHEHRGQPDGLIVCHLPFGPTAYFGLLNVVTRHDIKDRKA 178

Query: 841  MGKMSEAYPHLILDNFTTETGERTANIIKHLFPAPKLDSKRIITFANRDDYISFRGESHC 1020
            MGKMSEAYPHLILDNFTT+TGERTANI+KHLFP PK DSKRIITFANRDDYISFR   H 
Sbjct: 179  MGKMSEAYPHLILDNFTTKTGERTANIVKHLFPVPKPDSKRIITFANRDDYISFR---HH 235

Query: 1021 VY 1026
            VY
Sbjct: 236  VY 237



 Score =  219 bits (559), Expect(2) = e-115
 Identities = 109/120 (90%), Positives = 116/120 (96%)
 Frame = +2

Query: 257 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTELRNEELALRREIDLD 436
           MLRRNTRLRREYLYRKSLEGKERQHYEKKRR+REAL+EGKPIPTELRNEELALRREIDL+
Sbjct: 1   MLRRNTRLRREYLYRKSLEGKERQHYEKKRRLREALDEGKPIPTELRNEELALRREIDLE 60

Query: 437 GQGRAVPKNVIDDEYAGAALREPKILLTTSRNPSVPLTQFVKELKVVFPNSQRMNRGGQV 616
            +  AVP+++IDDEYAGAALREPKILLTTSRNPS PLTQFVKELKVVFPNSQRMNRGGQV
Sbjct: 61  DKDSAVPRSLIDDEYAGAALREPKILLTTSRNPSAPLTQFVKELKVVFPNSQRMNRGGQV 120



 Score =  109 bits (272), Expect = 6e-22
 Identities = 50/59 (84%), Positives = 56/59 (94%)
 Frame = +1

Query: 1192 HHVYEKHGGPKSIDLKEVGPGFELRLHQIKRGTVDQSEAHNEFVLRPYINTAEKQKARG 1368
            HHVYEKHGGPKS+DLKEVGP FELRL+QIKRGTVDQ+EA NEFVLRPY+NTA+KQK+ G
Sbjct: 234  HHVYEKHGGPKSLDLKEVGPRFELRLYQIKRGTVDQAEAQNEFVLRPYMNTAKKQKSLG 292


>emb|CAN61017.1| hypothetical protein [Vitis vinifera]
 emb|CAO67619.1| unnamed protein product [Vitis vinifera]
          Length = 293

 Score =  234 bits (597), Expect(2) = e-111
 Identities = 126/236 (53%), Positives = 154/236 (65%)
 Frame = +1

Query: 661  KVVSEIVESCSSHEITDLILVHEHRGQPDGLIVCHLPFGPTA*FGLLNVVTRHDIEDRKA 840
            +V+SEI+E+C +H+ TD++LVHEHRG PDG+I+ HLPFGPTA FGLLNVVTRHDI+D+KA
Sbjct: 119  QVISEIIETCRAHDFTDVVLVHEHRGVPDGIIISHLPFGPTAYFGLLNVVTRHDIKDKKA 178

Query: 841  MGKMSEAYPHLILDNFTTETGERTANIIKHLFPAPKLDSKRIITFANRDDYISFRGESHC 1020
            +GKMSEAYPHLIL+NF+T+ GERTANI+KHLFP PK D+KRI         I+F  +S  
Sbjct: 179  IGKMSEAYPHLILNNFSTKLGERTANILKHLFPVPKPDTKRI---------ITFANQSDY 229

Query: 1021 VYHPFWYFVEVNSSFHR*ILGIKHS*LIEPGC**NMMSFRKHTLI*HFVVLMICYGGHHV 1200
            V                                    SFR                 HHV
Sbjct: 230  V------------------------------------SFR-----------------HHV 236

Query: 1201 YEKHGGPKSIDLKEVGPGFELRLHQIKRGTVDQSEAHNEFVLRPYINTAEKQKARG 1368
            YEK GGPKSI+LKEVGP FELRL+QIK GT+DQSEA  E+V+RPY+NT +K+K  G
Sbjct: 237  YEKRGGPKSIELKEVGPRFELRLYQIKLGTMDQSEAQIEWVIRPYMNTTKKRKFLG 292



 Score =  192 bits (488), Expect(2) = e-111
 Identities = 95/120 (79%), Positives = 107/120 (89%)
 Frame = +2

Query: 257 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTELRNEELALRREIDLD 436
           MLRRN RLRREY+YRKSLEGKER  YEKKR+++EALEEGKPIPTELRNEE ALR+EIDL+
Sbjct: 1   MLRRNIRLRREYIYRKSLEGKERLLYEKKRKIKEALEEGKPIPTELRNEEAALRQEIDLE 60

Query: 437 GQGRAVPKNVIDDEYAGAALREPKILLTTSRNPSVPLTQFVKELKVVFPNSQRMNRGGQV 616
            +  AVP++ IDDEYA A  ++PKILLTTSRNPS PLTQFVKELK VFPN+QRMNRGGQV
Sbjct: 61  DEQTAVPRSHIDDEYANATEKDPKILLTTSRNPSAPLTQFVKELKFVFPNAQRMNRGGQV 120


>gb|ABK93432.1| unknown [Populus trichocarpa]
          Length = 293

 Score =  214 bits (546), Expect(2) = e-103
 Identities = 119/236 (50%), Positives = 147/236 (62%)
 Frame = +1

Query: 661  KVVSEIVESCSSHEITDLILVHEHRGQPDGLIVCHLPFGPTA*FGLLNVVTRHDIEDRKA 840
            +V+SEI+ESC +H+ TD+ILVHEHRG PDGL++CH+PFGPTA F LLNVVTRHDI+D+KA
Sbjct: 119  QVISEIIESCRAHDYTDVILVHEHRGVPDGLVICHIPFGPTAYFELLNVVTRHDIKDKKA 178

Query: 841  MGKMSEAYPHLILDNFTTETGERTANIIKHLFPAPKLDSKRIITFANRDDYISFRGESHC 1020
            +G M EA+PHLIL+NF ++ GERTANI+KHLFP PK D+KRIITFAN+ DYISFR   H 
Sbjct: 179  IGTMPEAHPHLILNNFKSKLGERTANILKHLFPMPKPDTKRIITFANQSDYISFR---HH 235

Query: 1021 VYHPFWYFVEVNSSFHR*ILGIKHS*LIEPGC**NMMSFRKHTLI*HFVVLMICYGGHHV 1200
            +Y                    KH                               G   V
Sbjct: 236  IYE-------------------KHG------------------------------GPKSV 246

Query: 1201 YEKHGGPKSIDLKEVGPGFELRLHQIKRGTVDQSEAHNEFVLRPYINTAEKQKARG 1368
              K  GP+          FE+RL+QIK GTVDQ+EA NE+VLRPY+NT +K+K  G
Sbjct: 247  ELKEIGPR----------FEMRLYQIKLGTVDQTEAQNEWVLRPYMNTTKKRKFIG 292



 Score =  185 bits (469), Expect(2) = e-103
 Identities = 91/120 (75%), Positives = 106/120 (88%)
 Frame = +2

Query: 257 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTELRNEELALRREIDLD 436
           MLRR+ RLRREYLYRKSLEGKER  YEKKR+++EAL EGKPIPTELRNEE ALR+EIDL+
Sbjct: 1   MLRRDIRLRREYLYRKSLEGKERLLYEKKRKIKEALAEGKPIPTELRNEEAALRQEIDLE 60

Query: 437 GQGRAVPKNVIDDEYAGAALREPKILLTTSRNPSVPLTQFVKELKVVFPNSQRMNRGGQV 616
            +  A+P++ IDDEYA A  R+PKILLTTSR+PS PLTQFVKELK VFPN++R+NRGGQV
Sbjct: 61  DENTAIPRSHIDDEYAKATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAERINRGGQV 120


>gb|EDQ52410.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 291

 Score =  214 bits (545), Expect(2) = e-101
 Identities = 115/234 (49%), Positives = 146/234 (62%)
 Frame = +1

Query: 661  KVVSEIVESCSSHEITDLILVHEHRGQPDGLIVCHLPFGPTA*FGLLNVVTRHDIEDRKA 840
            +V+SEIVESC + E +DLI+VHEHRG+PDGLIVCHLP+GPTA FGL NVVTRHDI+D+  
Sbjct: 119  QVISEIVESCRAQEYSDLIMVHEHRGEPDGLIVCHLPYGPTAYFGLSNVVTRHDIKDKGV 178

Query: 841  MGKMSEAYPHLILDNFTTETGERTANIIKHLFPAPKLDSKRIITFANRDDYISFRGESHC 1020
            +G MSE YPHLI +NF T+ G+RT NI+KHLFP PK D+KRI         I+F  +S  
Sbjct: 179  LGTMSEQYPHLIFNNFNTKLGQRTVNILKHLFPVPKPDAKRI---------ITFANQS-- 227

Query: 1021 VYHPFWYFVEVNSSFHR*ILGIKHS*LIEPGC**NMMSFRKHTLI*HFVVLMICYGGHHV 1200
                                              + +SFR                 HH+
Sbjct: 228  ----------------------------------DYISFR-----------------HHM 236

Query: 1201 YEKHGGPKSIDLKEVGPGFELRLHQIKRGTVDQSEAHNEFVLRPYINTAEKQKA 1362
            YEK  G KSID+KEVGP FELRL+Q+K GT+DQ+EA NE+V+RPY+N+ +K+ A
Sbjct: 237  YEKPAGVKSIDIKEVGPRFELRLYQVKLGTMDQTEAQNEWVIRPYMNSGKKRIA 290



 Score =  179 bits (455), Expect(2) = e-101
 Identities = 90/120 (75%), Positives = 102/120 (85%)
 Frame = +2

Query: 257 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTELRNEELALRREIDLD 436
           MLRRNTRLRREYLYRKSLEGKER  YEKKR++R+AL EGKPIPTELRNEE ALR+EIDL+
Sbjct: 1   MLRRNTRLRREYLYRKSLEGKERVLYEKKRKIRQALAEGKPIPTELRNEEAALRQEIDLE 60

Query: 437 GQGRAVPKNVIDDEYAGAALREPKILLTTSRNPSVPLTQFVKELKVVFPNSQRMNRGGQV 616
                  K+ IDDEY+ A +  PKILLTTSR+PS  LTQFVKELK+VFPN+QR+NRGGQV
Sbjct: 61  DDQTQELKSTIDDEYSNAGIENPKILLTTSRDPSSRLTQFVKELKIVFPNAQRINRGGQV 120


>ref|NP_176564.1| IMP4 [Arabidopsis thaliana]
 gb|AAG52427.1|AC011622_15 putative U3 small nucleolar ribonucleoprotein protein; 1537-3735
            [Arabidopsis thaliana]
 gb|AAG52449.1|AC010852_6 putative U3 small nucleolar ribonucleoprotein protein; 73469-75667
            [Arabidopsis thaliana]
 gb|AAM13001.1| putative U3 small nucleolar ribonucleoprotein protein [Arabidopsis
            thaliana]
 gb|AAM47924.1| putative U3 small nucleolar ribonucleoprotein protein [Arabidopsis
            thaliana]
 gb|AAM65692.1| putative U3 small nucleolar ribonucleoprotein [Arabidopsis thaliana]
          Length = 294

 Score =  216 bits (549), Expect(2) = 3e-98
 Identities = 116/237 (48%), Positives = 151/237 (63%), Gaps = 1/237 (0%)
 Frame = +1

Query: 661  KVVSEIVESCSSHEITDLILVHEHRGQPDGLIVCHLPFGPTA*FGLLNVVTRHDIEDRKA 840
            +V+SEI+E+  SH+ TD+ILVHEHRG PDGLI+ HLPFGPTA FGLLNVVTRHDI D+K+
Sbjct: 119  QVISEIIETARSHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDISDKKS 178

Query: 841  MGKMSEAYPHLILDNFTTETGERTANIIKHLFPAPKLDSKRIITFANRDDYISFRGESHC 1020
            +GKM E YPHLI +NFTT+ G+R  NI+KH+FPAPKLD+KRI         ++F  +S  
Sbjct: 179  IGKMPEQYPHLIFNNFTTQMGQRVGNILKHIFPAPKLDAKRI---------VTFSNQS-- 227

Query: 1021 VYHPFWYFVEVNSSFHR*ILGIKHS*LIEPGC**NMMSFRKHTLI*HFVVLMICYGGHHV 1200
                                              + +SFR                 +HV
Sbjct: 228  ----------------------------------DYISFR-----------------NHV 236

Query: 1201 YEK-HGGPKSIDLKEVGPGFELRLHQIKRGTVDQSEAHNEFVLRPYINTAEKQKARG 1368
            Y+K  GGPKSI+LKE+GP FELRL+Q+K GTV+Q+EA  E+V+RPY+NT++K+K  G
Sbjct: 237  YDKGEGGPKSIELKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFIG 293



 Score =  168 bits (426), Expect(2) = 3e-98
 Identities = 84/120 (70%), Positives = 98/120 (81%)
 Frame = +2

Query: 257 MLRRNTRLRREYLYRKSLEGKERQHYEKKRRVREALEEGKPIPTELRNEELALRREIDLD 436
           M RR  RL++EY+YRKSLEG ER+ YE+KR +REAL+EGKPIPTELRN E  LR+EIDL+
Sbjct: 1   MQRRLVRLKKEYIYRKSLEGDERKVYEQKRLIREALQEGKPIPTELRNVEAKLRQEIDLE 60

Query: 437 GQGRAVPKNVIDDEYAGAALREPKILLTTSRNPSVPLTQFVKELKVVFPNSQRMNRGGQV 616
            Q  AVP++ IDDEYA A   +PKILLTTSRNPS PL +F KELK VFPNSQR+NRG QV
Sbjct: 61  DQNTAVPRSHIDDEYANATEADPKILLTTSRNPSAPLIRFTKELKFVFPNSQRINRGSQV 120