BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst012h06
         (450 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAL31653.1|AC079179_8 Putative polyprotein from transposon TN...   137   2e-31
dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa (japonica...   134   1e-30
gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subc...   134   2e-30
gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa (jap...   134   2e-30
gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subc...   134   2e-30

>gb|AAL31653.1|AC079179_8 Putative polyprotein from transposon TNT [Oryza sativa]
 gb|AAP51896.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           (japonica cultivar-group)]
          Length = 1342

 Score =  137 bits (345), Expect = 2e-31
 Identities = 70/121 (57%), Positives = 89/121 (73%), Gaps = 3/121 (2%)
 Frame = +1

Query: 94  SCASLAARASSILMENGSLASVLGVGTVDLRLTLG*IVHLKNMQHAPTINNSLISGSLLC 273
           S A++  R SS+LM NGSLA+V GVGTVDL+ T G  V LKN+QH P+I  +L+SGSLLC
Sbjct: 356 SSANMVGRGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLC 415

Query: 274 RDGYKLVFESNKIVLSKFDNFVGKGYESGGLFRISTLEYNLN---VATVLNKCEANIWHS 444
           R+G++LVFESNK V+SK+  FVGKGY+SGGLFR S  +   N   V  +    E+N+WHS
Sbjct: 416 REGFRLVFESNKCVVSKYGTFVGKGYDSGGLFRFSLNDMCNNHNAVNHISENDESNVWHS 475

Query: 445 R 447
           R
Sbjct: 476 R 476


>dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1268

 Score =  134 bits (338), Expect = 1e-30
 Identities = 68/113 (60%), Positives = 86/113 (76%), Gaps = 2/113 (1%)
 Frame = +1

Query: 115 RASSILMENGSLASVLGVGTVDLRLTLG*IVHLKNMQHAPTINNSLISGSLLCRDGYKLV 294
           R SS+LM NGSLA+V GVGTVDL+ T G IV LKN+QH P+I  +L+SGSLLCRDG++LV
Sbjct: 290 RGSSLLMGNGSLAAVHGVGTVDLKFTSGKIVQLKNVQHVPSIKKNLVSGSLLCRDGFRLV 349

Query: 295 FESNKIVLSKFDNFVGKGYESGGLFRISTLEYNLNVATVL--NKCEANIWHSR 447
           FESNK V+SK+  F+GKGY+SGGLFR S  +    V   +  +  E+N+WHSR
Sbjct: 350 FESNKCVVSKYGTFIGKGYDSGGLFRFSLDDMCNKVVNHVSDDDDESNVWHSR 402


>gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           (japonica cultivar-group)]
          Length = 1413

 Score =  134 bits (337), Expect = 2e-30
 Identities = 69/114 (60%), Positives = 86/114 (75%), Gaps = 3/114 (2%)
 Frame = +1

Query: 115 RASSILMENGSLASVLGVGTVDLRLTLG*IVHLKNMQHAPTINNSLISGSLLCRDGYKLV 294
           R SS+LM NGSLA+V GVGTVDL+ T G  V LKN+QH P+I  +L+SGSLLCR+G++LV
Sbjct: 434 RGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLV 493

Query: 295 FESNKIVLSKFDNFVGKGYESGGLFRISTLEY--NLNVAT-VLNKCEANIWHSR 447
           FESNK V+SK+  FVGKGY+SGGLFR S  +   N NV   +    E+N+WHSR
Sbjct: 494 FESNKCVVSKYGTFVGKGYDSGGLFRFSLNDMCNNHNVVNHISENDESNVWHSR 547


>gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1394

 Score =  134 bits (337), Expect = 2e-30
 Identities = 69/114 (60%), Positives = 86/114 (75%), Gaps = 3/114 (2%)
 Frame = +1

Query: 115 RASSILMENGSLASVLGVGTVDLRLTLG*IVHLKNMQHAPTINNSLISGSLLCRDGYKLV 294
           R SS+LM NGSLA+V GVGTVDL+ T G  V LKN+QH P+I  +L+SGSLLCR+G++LV
Sbjct: 415 RGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLV 474

Query: 295 FESNKIVLSKFDNFVGKGYESGGLFRISTLEY--NLNVAT-VLNKCEANIWHSR 447
           FESNK V+SK+  FVGKGY+SGGLFR S  +   N NV   +    E+N+WHSR
Sbjct: 475 FESNKCVVSKYGTFVGKGYDSGGLFRFSLNDMCNNHNVVNHISENDESNVWHSR 528


>gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           (japonica cultivar-group)]
          Length = 1453

 Score =  134 bits (337), Expect = 2e-30
 Identities = 69/114 (60%), Positives = 87/114 (76%), Gaps = 3/114 (2%)
 Frame = +1

Query: 115 RASSILMENGSLASVLGVGTVDLRLTLG*IVHLKNMQHAPTINNSLISGSLLCRDGYKLV 294
           R SS+LM NGSLA+V GVGTVDL+ T G  V LKN+QH P+I  +L+SGSLLCR+G++LV
Sbjct: 474 RGSSLLMGNGSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLV 533

Query: 295 FESNKIVLSKFDNFVGKGYESGGLFRISTLEY--NLNVATVLNK-CEANIWHSR 447
           FESNK V+SK+  FVGKGY+SGGLFR S  +   N N    ++K  E+N+WHSR
Sbjct: 534 FESNKCVVSKYGTFVGKGYDSGGLFRFSLNDMCNNHNAVNHISKNDESNVWHSR 587