BLASTX 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyst012d12 (1267 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 5,815,196 sequences; 2,006,227,497 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_001105331.1| rough sheath1 [Zea mays] >gi|3024577|sp|Q418... 386 e-105 gb|AAQ11882.1| knotted 1 [Hordeum vulgare] 385 e-105 ref|NP_001058818.1| Os07g0129700 [Oryza sativa (japonica cultiva... 384 e-105 gb|AAC32818.1| KNOX class homeodomain protein [Oryza sativa] 383 e-104 dbj|BAA77817.1| HOS3 [Oryza sativa (japonica cultivar-group)] 382 e-104 >ref|NP_001105331.1| rough sheath1 [Zea mays] sp|Q41853|RSH1_MAIZE Homeobox protein rough sheath 1 gb|AAA86287.1| RS1 gene product Length = 351 Score = 386 bits (992), Expect = e-105 Identities = 214/316 (67%), Positives = 236/316 (74%), Gaps = 27/316 (8%) Frame = +2 Query: 209 AHHSSPLAL-HQLLAGPSSTQHGL----HKDGAVVQGEISPADADTVKAKIMSHPQYSAL 373 A++ +PLAL H A PSS+Q H A E+S A+A+ +KAKI++HPQYSAL Sbjct: 44 AYYGAPLALLHHAAAAPSSSQQHQQQQHHHHYARHGAEMSAAEAEAIKAKIVAHPQYSAL 103 Query: 374 LAAYLDCQKVAAPPDVLDRLSAVAAKLDALPAHGQREHEPRRADPELDQFMEAYCNMLVK 553 LAAYLDCQKV APPDVL+RL+A+AAKLDA A HEPR DPELDQFMEAYCNMLVK Sbjct: 104 LAAYLDCQKVGAPPDVLERLTAMAAKLDASAAG---RHEPR--DPELDQFMEAYCNMLVK 158 Query: 554 YCEELARPIQEATEFFKRVETQLD-------------SITDSNCEGAGSSEDDQDTSC-- 688 Y EEL RPI EA EF KRVE QLD S+ D EG GSSEDD D + Sbjct: 159 YREELTRPIDEAMEFLKRVEAQLDCISGGGGSSSARLSLADGKSEGVGSSEDDMDPNGRE 218 Query: 689 --PEEIDPCAEDKELKHQLLRKYGGYLGNLRQEFSKRKKKGKLPKEARQKLLHWWELHYK 862 P EIDP AEDKELK+QLL+KY GYL +LRQEFSK+KKKGKLPKEARQKLLHWWELHYK Sbjct: 219 NDPPEIDPRAEDKELKYQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYK 278 Query: 863 WPYPSETDKIALAESTGLDQKQINNWFINQRKRHWKPTAGDMPFSMMEGGFHVPQGTAAL 1042 WPYPSET+KIALAESTGLDQKQINNWFINQRKRHWKP+ DMPF MME GFH PQ AAL Sbjct: 279 WPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSE-DMPFVMME-GFH-PQNAAAL 335 Query: 1043 Y-----MVDGIYRLGS 1075 Y M DG+YRLGS Sbjct: 336 YMDGPFMRDGMYRLGS 351 >gb|AAQ11882.1| knotted 1 [Hordeum vulgare] Length = 349 Score = 385 bits (988), Expect = e-105 Identities = 211/311 (67%), Positives = 234/311 (75%), Gaps = 23/311 (7%) Frame = +2 Query: 212 HHSSPLALHQ--LLAGPSSTQHGLHKDGAVVQGEISPADADTVKAKIMSHPQYSALLAAY 385 ++ +PLALHQ AG S + + H + V GEIS A+A+ +K KIM+HPQY+ALL AY Sbjct: 47 YYGTPLALHQGAAAAGSSQSPYQFHHHKSSV-GEISQAEAEAIKTKIMAHPQYTALLVAY 105 Query: 386 LDCQKVAAPPDVLDRLSAVAAKLDALPAHGQREHEPRRADPELDQFMEAYCNMLVKYCEE 565 LDCQKV APPDVL+RL+A+AAKLDA R HE R DPELDQFMEAYCNML KY EE Sbjct: 106 LDCQKVGAPPDVLERLTAMAAKLDAHTPG--RLHEAR--DPELDQFMEAYCNMLAKYREE 161 Query: 566 LARPIQEATEFFKRVETQLDSITDSN------------CEGAGSSEDDQDTSC----PEE 697 L RPI+EA EF KRVE QLDSIT EG GSSEDD D S P E Sbjct: 162 LTRPIEEAMEFLKRVEAQLDSITGGGHGSAPLSLAAGKYEGVGSSEDDMDASGRENEPPE 221 Query: 698 IDPCAEDKELKHQLLRKYGGYLGNLRQEFSKRKKKGKLPKEARQKLLHWWELHYKWPYPS 877 IDP AEDK+LK+QLL+KY GYL +LRQEFSK+KKKGKLPKEARQKLLHWWELHYKWPYPS Sbjct: 222 IDPRAEDKDLKYQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPS 281 Query: 878 ETDKIALAESTGLDQKQINNWFINQRKRHWKPTAGDMPFSMMEGGFHVPQGTAALY---- 1045 ET+KIALAESTGLDQKQINNWFINQRKRHWKP+ DMPF MME GFH PQ AALY Sbjct: 282 ETEKIALAESTGLDQKQINNWFINQRKRHWKPSE-DMPFVMME-GFH-PQNAAALYMDGQ 338 Query: 1046 -MVDGIYRLGS 1075 M DG+YRLGS Sbjct: 339 FMADGMYRLGS 349 >ref|NP_001058818.1| Os07g0129700 [Oryza sativa (japonica cultivar-group)] dbj|BAA31688.1| OSH15 [Oryza sativa (japonica cultivar-group)] dbj|BAC84729.1| homeobox gene [Oryza sativa (japonica cultivar-group)] dbj|BAF20732.1| Os07g0129700 [Oryza sativa (japonica cultivar-group)] Length = 355 Score = 384 bits (986), Expect = e-105 Identities = 212/326 (65%), Positives = 234/326 (71%), Gaps = 37/326 (11%) Frame = +2 Query: 209 AHHSSPLALHQLLAGPSSTQHGLH------------KDGAVVQGEISPADADTVKAKIMS 352 A++ +PLALHQ A +Q+ H K G GEIS A+A+++KAKIM+ Sbjct: 38 AYYGTPLALHQAAAAAGPSQYHGHGHPHHGGGHHHSKHGGAGGGEISAAEAESIKAKIMA 97 Query: 353 HPQYSALLAAYLDCQKVAAPPDVLDRLSAVAAKLDALPAHGQREHEPRRADPELDQFMEA 532 HPQYSALLAAYLDCQKV APP+VL+RL+A AAKLDA P H+ R DPELDQFMEA Sbjct: 98 HPQYSALLAAYLDCQKVGAPPEVLERLTATAAKLDARPPG---RHDAR--DPELDQFMEA 152 Query: 533 YCNMLVKYCEELARPIQEATEFFKRVETQLDSIT----------------DSNCEGAGSS 664 YCNML KY EEL RPI EA EF KRVE+QLD+I D E GSS Sbjct: 153 YCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGAHGGGAGSARLLLADGKSECVGSS 212 Query: 665 EDDQDTSC----PEEIDPCAEDKELKHQLLRKYGGYLGNLRQEFSKRKKKGKLPKEARQK 832 EDD D S P EIDP AEDKELK QLL+KY GYL +LRQEFSK+KKKGKLPKEARQK Sbjct: 213 EDDMDPSGRENEPPEIDPRAEDKELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQK 272 Query: 833 LLHWWELHYKWPYPSETDKIALAESTGLDQKQINNWFINQRKRHWKPTAGDMPFSMMEGG 1012 LLHWWELHYKWPYPSET+KIALAESTGLDQKQINNWFINQRKRHWKP+ DMPF MME G Sbjct: 273 LLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSE-DMPFVMME-G 330 Query: 1013 FHVPQGTAALY-----MVDGIYRLGS 1075 FH PQ AALY M DG+YRLGS Sbjct: 331 FH-PQNAAALYMDGPFMADGMYRLGS 355 >gb|AAC32818.1| KNOX class homeodomain protein [Oryza sativa] Length = 357 Score = 383 bits (983), Expect = e-104 Identities = 212/329 (64%), Positives = 234/329 (71%), Gaps = 40/329 (12%) Frame = +2 Query: 209 AHHSSPLALHQLLAGPSSTQHGLH------------KDGAVVQGEISPADADTVKAKIMS 352 A++ +PLALHQ A +Q+ H K G GEIS A+A+++KAKIM+ Sbjct: 37 AYYGTPLALHQAAAAAGPSQYHGHGHPHHGGGHHHSKHGGAGGGEISAAEAESIKAKIMA 96 Query: 353 HPQYSALLAAYLDCQKVAAPPDVLDRLSAVAAKLDALPAHGQREHEPRRADPELDQFMEA 532 HPQYSALLAAYLDCQKV APP+VL+RL+A AAKLDA P H+ R DPELDQFMEA Sbjct: 97 HPQYSALLAAYLDCQKVGAPPEVLERLTATAAKLDARPPG---RHDAR--DPELDQFMEA 151 Query: 533 YCNMLVKYCEELARPIQEATEFFKRVETQLDSIT-------------------DSNCEGA 655 YCNML KY EEL RPI EA EF KRVE+QLD+I D E Sbjct: 152 YCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGGHGGSGGGAGSARLLLADGKSECV 211 Query: 656 GSSEDDQDTSC----PEEIDPCAEDKELKHQLLRKYGGYLGNLRQEFSKRKKKGKLPKEA 823 GSSEDD D S P EIDP AEDKELK QLL+KY GYL +LRQEFSK+KKKGKLPKEA Sbjct: 212 GSSEDDMDPSGRENEPPEIDPRAEDKELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEA 271 Query: 824 RQKLLHWWELHYKWPYPSETDKIALAESTGLDQKQINNWFINQRKRHWKPTAGDMPFSMM 1003 RQKLLHWWELHYKWPYPSET+KIALAESTGLDQKQINNWFINQRKRHWKP+ DMPF MM Sbjct: 272 RQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSE-DMPFVMM 330 Query: 1004 EGGFHVPQGTAALY-----MVDGIYRLGS 1075 E GFH PQ AALY M DG+YRLGS Sbjct: 331 E-GFH-PQNAAALYMDGPFMADGMYRLGS 357 >dbj|BAA77817.1| HOS3 [Oryza sativa (japonica cultivar-group)] Length = 355 Score = 382 bits (980), Expect = e-104 Identities = 210/326 (64%), Positives = 232/326 (71%), Gaps = 37/326 (11%) Frame = +2 Query: 209 AHHSSPLALHQLLAGPSSTQHGLH------------KDGAVVQGEISPADADTVKAKIMS 352 A++ +PLALHQ A +Q+ H K G GEIS A+A+++KAKIM+ Sbjct: 38 AYYGTPLALHQAAAAAGPSQYHGHGHPHHGGGHHHSKHGGAGGGEISAAEAESIKAKIMA 97 Query: 353 HPQYSALLAAYLDCQKVAAPPDVLDRLSAVAAKLDALPAHGQREHEPRRADPELDQFMEA 532 HPQYSALLAAYLDCQKV APP+VL+RL+A AAKLDA P H+ R DPELDQFMEA Sbjct: 98 HPQYSALLAAYLDCQKVGAPPEVLERLTATAAKLDARPPG---RHDAR--DPELDQFMEA 152 Query: 533 YCNMLVKYCEELARPIQEATEFFKRVETQLDSIT----------------DSNCEGAGSS 664 YCNML KY EEL RPI EA EF KRVE+QLD+I D E GSS Sbjct: 153 YCNMLAKYREELTRPIDEAMEFLKRVESQLDTIAGGAHGGGAGSARLLLADGKSECVGSS 212 Query: 665 EDDQDTSC----PEEIDPCAEDKELKHQLLRKYGGYLGNLRQEFSKRKKKGKLPKEARQK 832 EDD D S P EIDP AEDKELK QLL+KY GYL +LRQEFSK+KKKGKLPKEARQK Sbjct: 213 EDDMDPSGRENEPPEIDPRAEDKELKFQLLKKYSGYLSSLRQEFSKKKKKGKLPKEARQK 272 Query: 833 LLHWWELHYKWPYPSETDKIALAESTGLDQKQINNWFINQRKRHWKPTAGDMPFSMMEGG 1012 LLHWWELHYKWPYPSET+KIALAESTGLDQKQINNWFINQRKRHWKP+ DMPF MMEG Sbjct: 273 LLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQRKRHWKPSE-DMPFVMMEG- 330 Query: 1013 FHVPQGTAALY-----MVDGIYRLGS 1075 PQ AALY M DG+YRLGS Sbjct: 331 -FPPQNAAALYMDGPFMADGMYRLGS 355