BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst011j20
         (689 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAC99422.1| putative snRNP core protein SMX5d [Oryza sativa ...   184   3e-45
gb|ABK21554.1| unknown [Picea sitchensis] >gi|116790929|gb|ABK25...   181   3e-44
gb|ABK94305.1| unknown [Populus trichocarpa]                          178   3e-43
ref|NP_563682.1| small nuclear ribonucleoprotein D, putative / s...   177   6e-43
gb|ABK93861.1| unknown [Populus trichocarpa]                          176   1e-42

>dbj|BAC99422.1| putative snRNP core protein SMX5d [Oryza sativa (japonica
           cultivar-group)]
          Length = 288

 Score =  184 bits (468), Expect = 3e-45
 Identities = 91/92 (98%), Positives = 91/92 (98%)
 Frame = +1

Query: 226 LFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDSDKYPHMLSVRNCF 405
           LFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVD DKYPHMLSVRNCF
Sbjct: 197 LFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCF 256

Query: 406 IRGSVVRYVLLPQDGVDIDILHDATRREARGG 501
           IRGSVVRYVLLPQDGVDIDILHDATRREARGG
Sbjct: 257 IRGSVVRYVLLPQDGVDIDILHDATRREARGG 288


>gb|ABK21554.1| unknown [Picea sitchensis]
 gb|ABK25794.1| unknown [Picea sitchensis]
          Length = 93

 Score =  181 bits (459), Expect = 3e-44
 Identities = 88/93 (94%), Positives = 91/93 (97%)
 Frame = +1

Query: 223 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDSDKYPHMLSVRNC 402
           MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVV+ DKYPHMLSV+NC
Sbjct: 1   MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVEQDKYPHMLSVKNC 60

Query: 403 FIRGSVVRYVLLPQDGVDIDILHDATRREARGG 501
           FIRGSVVRYVLLP DGVD+DILHDATRREARGG
Sbjct: 61  FIRGSVVRYVLLPPDGVDVDILHDATRREARGG 93


>gb|ABK94305.1| unknown [Populus trichocarpa]
          Length = 93

 Score =  178 bits (451), Expect = 3e-43
 Identities = 86/93 (92%), Positives = 90/93 (96%)
 Frame = +1

Query: 223 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDSDKYPHMLSVRNC 402
           MLFFSYFK+LVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVD DKYPHMLSVRNC
Sbjct: 1   MLFFSYFKDLVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 403 FIRGSVVRYVLLPQDGVDIDILHDATRREARGG 501
           FIRGSVVRYV LP +GVD+D+LHDATRREARGG
Sbjct: 61  FIRGSVVRYVQLPPEGVDVDLLHDATRREARGG 93


>ref|NP_563682.1| small nuclear ribonucleoprotein D, putative / snRNP core SM-like
           protein, putative / U6 snRNA-associated Sm-like protein,
           putative [Arabidopsis thaliana]
 gb|ABF58987.1| At1g03330 [Arabidopsis thaliana]
          Length = 93

 Score =  177 bits (448), Expect = 6e-43
 Identities = 85/93 (91%), Positives = 90/93 (96%)
 Frame = +1

Query: 223 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDSDKYPHMLSVRNC 402
           MLFFSYFK+LVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVD DKYPHMLSVRNC
Sbjct: 1   MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 403 FIRGSVVRYVLLPQDGVDIDILHDATRREARGG 501
           FIRGSVVRYV LP+DGVD+D+LHDA RREARGG
Sbjct: 61  FIRGSVVRYVQLPKDGVDVDLLHDAARREARGG 93


>gb|ABK93861.1| unknown [Populus trichocarpa]
          Length = 93

 Score =  176 bits (446), Expect = 1e-42
 Identities = 85/93 (91%), Positives = 89/93 (95%)
 Frame = +1

Query: 223 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDSDKYPHMLSVRNC 402
           MLFFSYFK+LVGKEVTVELKNDLAIRG LHSVDQYLNIKLENTRVVD DKYPHMLSVRNC
Sbjct: 1   MLFFSYFKDLVGKEVTVELKNDLAIRGNLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60

Query: 403 FIRGSVVRYVLLPQDGVDIDILHDATRREARGG 501
           FIRGSVVRYV LP +GVD+D+LHDATRREARGG
Sbjct: 61  FIRGSVVRYVQLPPEGVDVDLLHDATRREARGG 93