BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst010e24
         (1018 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAZ02226.1| hypothetical protein OsI_023458 [Oryza sativa (in...   280   1e-73
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s...   280   1e-73
ref|NP_001051880.1| Os03g0845700 [Oryza sativa (japonica cultiva...   243   1e-62
gb|EAY92567.1| hypothetical protein OsI_013800 [Oryza sativa (in...   228   4e-58
gb|ABK26380.1| unknown [Picea sitchensis]                             222   3e-56

>gb|EAZ02226.1| hypothetical protein OsI_023458 [Oryza sativa (indica
           cultivar-group)]
 gb|EAZ38147.1| hypothetical protein OsJ_021630 [Oryza sativa (japonica
           cultivar-group)]
          Length = 191

 Score =  280 bits (715), Expect = 1e-73
 Identities = 139/147 (94%), Positives = 144/147 (97%)
 Frame = +2

Query: 317 KMVEHLFEDIFIVTRLDPDGKKFDKVTRIEARSEQFDMYMQLDVATEVYPMCAGDKFTMV 496
           KMVEHLFEDIF VTRLDPDGKKFD+V+RIEARSEQFDMYMQLDVATEVYPM AGD+FTMV
Sbjct: 45  KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 104

Query: 497 LAPTLNLDGTPDTGFYTQAGRKTLADKYDYVMHGKLYKISEDSSSGQAAKVEIYASFGGL 676
           LAPTLNLDGTPDTGFYTQAGRKTLADK+DYVMHGKLYKISEDSSSGQA KVEIYASFGGL
Sbjct: 105 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 164

Query: 677 LMMLKGDPSNAASFELDQRLFLLIRKV 757
           LMMLKGDPS+AASFELDQRLFLLIRKV
Sbjct: 165 LMMLKGDPSSAASFELDQRLFLLIRKV 191


>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
           sativa (japonica cultivar-group)]
          Length = 396

 Score =  280 bits (715), Expect = 1e-73
 Identities = 139/147 (94%), Positives = 144/147 (97%)
 Frame = +2

Query: 317 KMVEHLFEDIFIVTRLDPDGKKFDKVTRIEARSEQFDMYMQLDVATEVYPMCAGDKFTMV 496
           KMVEHLFEDIF VTRLDPDGKKFD+V+RIEARSEQFDMYMQLDVATEVYPM AGD+FTMV
Sbjct: 250 KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 309

Query: 497 LAPTLNLDGTPDTGFYTQAGRKTLADKYDYVMHGKLYKISEDSSSGQAAKVEIYASFGGL 676
           LAPTLNLDGTPDTGFYTQAGRKTLADK+DYVMHGKLYKISEDSSSGQA KVEIYASFGGL
Sbjct: 310 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 369

Query: 677 LMMLKGDPSNAASFELDQRLFLLIRKV 757
           LMMLKGDPS+AASFELDQRLFLLIRKV
Sbjct: 370 LMMLKGDPSSAASFELDQRLFLLIRKV 396


>ref|NP_001051880.1| Os03g0845700 [Oryza sativa (japonica cultivar-group)]
 gb|AAO73277.1| putative RNA polymerase [Oryza sativa (japonica cultivar-group)]
 gb|AAS07361.1| putative  RNA polymerase [Oryza sativa (japonica cultivar-group)]
 gb|ABF99871.1| RNA polymerase Rpb8 family protein, expressed [Oryza sativa
           (japonica cultivar-group)]
 gb|ABF99872.1| RNA polymerase Rpb8 family protein, expressed [Oryza sativa
           (japonica cultivar-group)]
 dbj|BAF13794.1| Os03g0845700 [Oryza sativa (japonica cultivar-group)]
 gb|EAZ29288.1| hypothetical protein OsJ_012771 [Oryza sativa (japonica
           cultivar-group)]
          Length = 148

 Score =  243 bits (621), Expect = 1e-62
 Identities = 121/148 (81%), Positives = 135/148 (91%), Gaps = 2/148 (1%)
 Frame = +2

Query: 320 MVEHLFEDIFIVTRLDPDGKKFDKVTRIEARSEQFDMYMQLDVATEVYPMCAGDKFTMVL 499
           M E LFEDIF VTRLDPDGKKFD+V+RIEARS+QFDMYMQLDVAT+VYPM  GD+FTMVL
Sbjct: 1   MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 60

Query: 500 APTLNLDGTPDTGFYTQAGRKTLADKYDYVMHGKLYKISE--DSSSGQAAKVEIYASFGG 673
            PTLNLDGTPD+ F+TQAGRKTLADKY+YVMHGKLYKISE  D+S   A KVE+YASFGG
Sbjct: 61  VPTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGG 120

Query: 674 LLMMLKGDPSNAASFELDQRLFLLIRKV 757
           LL+MLKGDPS+AA+FELDQRLFLL+RKV
Sbjct: 121 LLVMLKGDPSSAANFELDQRLFLLMRKV 148


>gb|EAY92567.1| hypothetical protein OsI_013800 [Oryza sativa (indica
           cultivar-group)]
          Length = 247

 Score =  228 bits (582), Expect = 4e-58
 Identities = 122/182 (67%), Positives = 136/182 (74%), Gaps = 34/182 (18%)
 Frame = +2

Query: 314 GKMVEHLFEDIFIVTRLDPDGKKFDKVTRIEARSEQFDMYMQLDVATEVYPMCAGDKFTM 493
           G M E LFEDIF VTRLDPDGKKFD+V+RIEARS+QFDMYMQLDVAT+VYPM  GD+FTM
Sbjct: 66  GGMAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTM 125

Query: 494 VLAPTLNLDGTPDTGFYTQ--------------------------------AGRKTLADK 577
           VL PTLNLDGTPD+ F+TQ                                AGRKTLADK
Sbjct: 126 VLVPTLNLDGTPDSAFFTQVVPLASNFIITKVRHIDKTPGRQVNTEVSPFQAGRKTLADK 185

Query: 578 YDYVMHGKLYKISED--SSSGQAAKVEIYASFGGLLMMLKGDPSNAASFELDQRLFLLIR 751
           Y+YVMHGKLYKISED  +S   A KVE+YASFGGLL+MLKGDPS+AA+FELDQRLFLL+R
Sbjct: 186 YEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGGLLVMLKGDPSSAANFELDQRLFLLMR 245

Query: 752 KV 757
           KV
Sbjct: 246 KV 247


>gb|ABK26380.1| unknown [Picea sitchensis]
          Length = 145

 Score =  222 bits (566), Expect = 3e-56
 Identities = 110/146 (75%), Positives = 126/146 (86%)
 Frame = +2

Query: 320 MVEHLFEDIFIVTRLDPDGKKFDKVTRIEARSEQFDMYMQLDVATEVYPMCAGDKFTMVL 499
           MVE LFEDIF VTR+DPDGKKFDKV+RIEARSEQFDMYM LDV  +VYP+  G+KF + L
Sbjct: 1   MVELLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVAL 60

Query: 500 APTLNLDGTPDTGFYTQAGRKTLADKYDYVMHGKLYKISEDSSSGQAAKVEIYASFGGLL 679
           APTLNLDGTPD G++ Q GRK+LADKY+YVM+GKLY +SE+  SG   KVEI ASFGGLL
Sbjct: 61  APTLNLDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEE-GSGANVKVEINASFGGLL 119

Query: 680 MMLKGDPSNAASFELDQRLFLLIRKV 757
           M+LKGDPSNA +FELDQRLFLL+RKV
Sbjct: 120 MLLKGDPSNAGNFELDQRLFLLMRKV 145