BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst008o21
         (769 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAZ05509.1| hypothetical protein OsI_026741 [Oryza sativa (in...   163   9e-39
dbj|BAD03057.1| RNA polymerase II complex component SRB7 protein...   162   2e-38
gb|AAL73528.1|AF466200_7 putative RNA polymerase II complex comp...   159   2e-37
ref|NP_001060943.1| Os08g0135600 [Oryza sativa (japonica cultiva...   114   8e-24
ref|NP_192387.1| unknown protein [Arabidopsis thaliana] >gi|7267...   110   7e-23

>gb|EAZ05509.1| hypothetical protein OsI_026741 [Oryza sativa (indica
           cultivar-group)]
          Length = 172

 Score =  163 bits (413), Expect = 9e-39
 Identities = 97/172 (56%), Positives = 104/172 (60%), Gaps = 12/172 (6%)
 Frame = +2

Query: 50  MDIISQLQEQLNEMAMVAVNTFGTLQRDAPPVRLSNSYXXXXXXXXXXXXXSQ------- 208
           MDIISQLQEQLNEMAMVAVNTFGTLQRDAPPVRLSN+Y             +        
Sbjct: 1   MDIISQLQEQLNEMAMVAVNTFGTLQRDAPPVRLSNNYPDPLNPAAAAANPNPDDPAQPQ 60

Query: 209 -----TXXXXXXXXXXXXXXXXXXXXLDLAEQPKAMSHALILAAKKFDALVAALPLSSEE 373
                                     LDLAE PKAMSHAL+LAAKKFDALV+ALPLSSEE
Sbjct: 61  PGAAAAAPGAPAAQAQAPPAQAQPPALDLAEHPKAMSHALVLAAKKFDALVSALPLSSEE 120

Query: 374 DQLKRIQELQAENEVVGXXXXXXXXXXXXXXXXXXXXFNEATDNCINLKKPD 529
           DQLKRI+ELQAENEVVG                    FNEATD+CINLKKP+
Sbjct: 121 DQLKRIKELQAENEVVGSELQKQLEAAELELKQVEALFNEATDHCINLKKPE 172


>dbj|BAD03057.1| RNA polymerase II complex component SRB7 protein-like [Oryza sativa
           (japonica cultivar-group)]
 dbj|BAD16305.1| RNA polymerase II complex component SRB7 protein-like [Oryza sativa
           (japonica cultivar-group)]
 gb|EAZ41437.1| hypothetical protein OsJ_024920 [Oryza sativa (japonica
           cultivar-group)]
          Length = 236

 Score =  162 bits (411), Expect = 2e-38
 Identities = 97/174 (55%), Positives = 104/174 (59%), Gaps = 14/174 (8%)
 Frame = +2

Query: 50  MDIISQLQEQLNEMAMVAVNTFGTLQRDAPPVRLSNSYXXXXXXXXXXXXX--------- 202
           MDIISQLQEQLNEMAMVAVNTFGTLQRDAPPVRLSN+Y                      
Sbjct: 63  MDIISQLQEQLNEMAMVAVNTFGTLQRDAPPVRLSNNYPDPLNPAAAAAANPNPDDPAQP 122

Query: 203 -----SQTXXXXXXXXXXXXXXXXXXXXLDLAEQPKAMSHALILAAKKFDALVAALPLSS 367
                +                      LDLAE PKAMSHAL+LAAKKFDALV+ALPLSS
Sbjct: 123 QPGAAAAAAAGAPAAQAQAPPAQAQPPALDLAEHPKAMSHALVLAAKKFDALVSALPLSS 182

Query: 368 EEDQLKRIQELQAENEVVGXXXXXXXXXXXXXXXXXXXXFNEATDNCINLKKPD 529
           EEDQLKRI+ELQAENEVVG                    FNEATD+CINLKKP+
Sbjct: 183 EEDQLKRIKELQAENEVVGTELQKQLEAAELELKQVEALFNEATDHCINLKKPE 236


>gb|AAL73528.1|AF466200_7 putative RNA polymerase II complex component SRB7 [Sorghum bicolor]
          Length = 159

 Score =  159 bits (402), Expect = 2e-37
 Identities = 93/160 (58%), Positives = 102/160 (63%)
 Frame = +2

Query: 50  MDIISQLQEQLNEMAMVAVNTFGTLQRDAPPVRLSNSYXXXXXXXXXXXXXSQTXXXXXX 229
           MDII+QLQ+QL+EMA++AVNTFGTLQRDAPP RLSNSY             S T      
Sbjct: 1   MDIITQLQDQLDEMAVLAVNTFGTLQRDAPPDRLSNSYPDPLNPNPKPEDVS-TKPQVQG 59

Query: 230 XXXXXXXXXXXXXXLDLAEQPKAMSHALILAAKKFDALVAALPLSSEEDQLKRIQELQAE 409
                          DL+EQPKAMSHAL+LAAKKFDALVAALPLSSEEDQ+KRIQELQAE
Sbjct: 60  QPGAPPPAQAQPPAPDLSEQPKAMSHALVLAAKKFDALVAALPLSSEEDQVKRIQELQAE 119

Query: 410 NEVVGXXXXXXXXXXXXXXXXXXXXFNEATDNCINLKKPD 529
           NEVVG                    FNEATDNCIN K+ D
Sbjct: 120 NEVVGLELQKQLEAAERELKQVEVLFNEATDNCINFKRLD 159


>ref|NP_001060943.1| Os08g0135600 [Oryza sativa (japonica cultivar-group)]
 dbj|BAF22857.1| Os08g0135600 [Oryza sativa (japonica cultivar-group)]
          Length = 523

 Score =  114 bits (284), Expect = 8e-24
 Identities = 60/86 (69%), Positives = 65/86 (75%)
 Frame = +2

Query: 272 LDLAEQPKAMSHALILAAKKFDALVAALPLSSEEDQLKRIQELQAENEVVGXXXXXXXXX 451
           LDLAE PKAMSHAL+LAAKKFDALV+ALPLSSEEDQLKRI+ELQAENEVVG         
Sbjct: 438 LDLAEHPKAMSHALVLAAKKFDALVSALPLSSEEDQLKRIKELQAENEVVGTELQKQLEA 497

Query: 452 XXXXXXXXXXXFNEATDNCINLKKPD 529
                      FNEATD+CINLKKP+
Sbjct: 498 AELELKQVEALFNEATDHCINLKKPE 523


>ref|NP_192387.1| unknown protein [Arabidopsis thaliana]
 emb|CAB80843.1| hypothetical protein [Arabidopsis thaliana]
          Length = 381

 Score =  110 bits (276), Expect = 7e-23
 Identities = 69/162 (42%), Positives = 84/162 (51%), Gaps = 2/162 (1%)
 Frame = +2

Query: 50  MDIISQLQEQLNEMAMVAVNTFGTLQRDAPPVRLSNSYXXXXXXXXXXXXXSQTXXXXXX 229
           MDIISQLQEQ+N +A +  N FGTLQRDAPPV+LS +Y             +        
Sbjct: 243 MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATP------- 295

Query: 230 XXXXXXXXXXXXXXLDLAEQPKAMSHALILAAKKFDALVAALPLS--SEEDQLKRIQELQ 403
                             EQPK +S  L+ AAK+FDALVAALPLS   E  QLKRI ELQ
Sbjct: 296 ----------------FPEQPKQLSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQ 339

Query: 404 AENEVVGXXXXXXXXXXXXXXXXXXXXFNEATDNCINLKKPD 529
            EN++VG                    F +A DNC+N+KKP+
Sbjct: 340 VENDLVGQELQKQLEAAEKELKQVQELFGQAADNCLNMKKPE 381