BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst007c09
         (1411 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001067296.1| Os12g0620400 [Oryza sativa (japonica cultiva...   280   2e-73
gb|ABG22088.1| Methyl-CpG binding domain containing protein, exp...   265   4e-69
gb|EAY83934.1| hypothetical protein OsI_037893 [Oryza sativa (in...   253   2e-65
ref|NP_001105174.1| methyl binding domain [Zea mays] >gi|1393630...   209   3e-52
ref|NP_001105175.1| methyl binding domain [Zea mays] >gi|1393631...   202   5e-50

>ref|NP_001067296.1| Os12g0620400 [Oryza sativa (japonica cultivar-group)]
 gb|ABA99897.1| Methyl-CpG binding domain containing protein, expressed [Oryza sativa
            (japonica cultivar-group)]
 dbj|BAF30315.1| Os12g0620400 [Oryza sativa (japonica cultivar-group)]
          Length = 303

 Score =  280 bits (716), Expect = 2e-73
 Identities = 172/330 (52%), Positives = 187/330 (56%), Gaps = 9/330 (2%)
 Frame = +3

Query: 141  VVSVEMPAPQGWTKKFTPQRVGRSEIVFVSPTGEEIKNKRQLNQYLKAHPGGPASSEFDW 320
            VVSVEMPAP+GWTKKFTPQR GR EIVFVSPTGEEIKNKRQL+QYLKAHPGGPASSEFDW
Sbjct: 28   VVSVEMPAPEGWTKKFTPQRGGRFEIVFVSPTGEEIKNKRQLSQYLKAHPGGPASSEFDW 87

Query: 321  GTGDTPRRSARISEKVKAFDSPEGEKIPKRSRNSTGRKGXXXXXXXXXXXXXXXXXXXXX 500
            GTGDTPRRSARISEKVKAFDSPEGEKIPKRSRNS+GRKG                     
Sbjct: 88   GTGDTPRRSARISEKVKAFDSPEGEKIPKRSRNSSGRKG--------------KQEKKEA 133

Query: 501  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEVKEAPSEDAAKGTDVEMXXXXXXXXXX 680
                                           EE KEAPSEDA K TDVEM          
Sbjct: 134  TENEEAKDAEADKEAPSEDAPKETDVETKPAEEAKEAPSEDAPKDTDVEMKTAEDA---- 189

Query: 681  XXXXXXXXXXXXXXXXXXXXXDGKPAESDVAPPAPSEGEKKE------EVAPPAPSDGEK 842
                                   K A++D   PAP+  EK++      E APPAPS+G +
Sbjct: 190  ----------------------SKTADADTPAPAPAGTEKEDAKPAESEAAPPAPSEGGE 227

Query: 843  KEEVAPPAPSEGEKKEEVAPPASNPTENSVXXXXXXXXXXXXXXXXPVENSADKGAHQDS 1022
            K+E A PA     + E  A P SNPTE S                 PVENSADKG HQDS
Sbjct: 228  KKEDAKPA-----EPEAAAAPPSNPTEPSA---------PKAAAAAPVENSADKGPHQDS 273

Query: 1023 QPTGA---TKESSAVSNGQVPPGASSVKCT 1103
            QP  A    KESS V+NGQ+P GAS+VKCT
Sbjct: 274  QPPSAAAPAKESSPVNNGQLPAGASAVKCT 303


>gb|ABG22088.1| Methyl-CpG binding domain containing protein, expressed [Oryza sativa
            (japonica cultivar-group)]
          Length = 299

 Score =  265 bits (678), Expect = 4e-69
 Identities = 168/330 (50%), Positives = 183/330 (55%), Gaps = 9/330 (2%)
 Frame = +3

Query: 141  VVSVEMPAPQGWTKKFTPQRVGRSEIVFVSPTGEEIKNKRQLNQYLKAHPGGPASSEFDW 320
            VVSVEMPAP+GWTKK    R GR EIVFVSPTGEEIKNKRQL+QYLKAHPGGPASSEFDW
Sbjct: 28   VVSVEMPAPEGWTKK----RGGRFEIVFVSPTGEEIKNKRQLSQYLKAHPGGPASSEFDW 83

Query: 321  GTGDTPRRSARISEKVKAFDSPEGEKIPKRSRNSTGRKGXXXXXXXXXXXXXXXXXXXXX 500
            GTGDTPRRSARISEKVKAFDSPEGEKIPKRSRNS+GRKG                     
Sbjct: 84   GTGDTPRRSARISEKVKAFDSPEGEKIPKRSRNSSGRKG--------------KQEKKEA 129

Query: 501  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEEVKEAPSEDAAKGTDVEMXXXXXXXXXX 680
                                           EE KEAPSEDA K TDVEM          
Sbjct: 130  TENEEAKDAEADKEAPSEDAPKETDVETKPAEEAKEAPSEDAPKDTDVEMKTAEDA---- 185

Query: 681  XXXXXXXXXXXXXXXXXXXXXDGKPAESDVAPPAPSEGEKKE------EVAPPAPSDGEK 842
                                   K A++D   PAP+  EK++      E APPAPS+G +
Sbjct: 186  ----------------------SKTADADTPAPAPAGTEKEDAKPAESEAAPPAPSEGGE 223

Query: 843  KEEVAPPAPSEGEKKEEVAPPASNPTENSVXXXXXXXXXXXXXXXXPVENSADKGAHQDS 1022
            K+E A PA     + E  A P SNPTE S                 PVENSADKG HQDS
Sbjct: 224  KKEDAKPA-----EPEAAAAPPSNPTEPSA---------PKAAAAAPVENSADKGPHQDS 269

Query: 1023 QPTGA---TKESSAVSNGQVPPGASSVKCT 1103
            QP  A    KESS V+NGQ+P GAS+VKCT
Sbjct: 270  QPPSAAAPAKESSPVNNGQLPAGASAVKCT 299


>gb|EAY83934.1| hypothetical protein OsI_037893 [Oryza sativa (indica
            cultivar-group)]
 gb|EAZ21252.1| hypothetical protein OsJ_035461 [Oryza sativa (japonica
            cultivar-group)]
          Length = 313

 Score =  253 bits (646), Expect = 2e-65
 Identities = 161/327 (49%), Positives = 177/327 (54%), Gaps = 9/327 (2%)
 Frame = +3

Query: 150  VEMPAPQGWTKKFTPQRVGRSEIVFVSPTGEEIKNKRQLNQYLKAHPGGPASSEFDWGTG 329
            V+ P    + K FTPQR GR EIVFVSPTGEEIKNKRQL+QYLKAHPGGPASSEFDWGTG
Sbjct: 41   VKCPLKVPFLKLFTPQRGGRFEIVFVSPTGEEIKNKRQLSQYLKAHPGGPASSEFDWGTG 100

Query: 330  DTPRRSARISEKVKAFDSPEGEKIPKRSRNSTGRKGXXXXXXXXXXXXXXXXXXXXXXXX 509
            DTPRRSARISEKVKAFDSPEGEKIPKRSRNS+GRKG                        
Sbjct: 101  DTPRRSARISEKVKAFDSPEGEKIPKRSRNSSGRKG--------------KQEKKEATEN 146

Query: 510  XXXXXXXXXXXXXXXXXXXXXXXXXXXGEEVKEAPSEDAAKGTDVEMXXXXXXXXXXXXX 689
                                        EE KEAPSEDA K TDVEM             
Sbjct: 147  EEAKDAEADKEAPSEDAPKETDVETKPAEEAKEAPSEDAPKDTDVEMKTAEDA------- 199

Query: 690  XXXXXXXXXXXXXXXXXXDGKPAESDVAPPAPSEGEKKE------EVAPPAPSDGEKKEE 851
                                K A++D   PAP+  EK++      E APPAPS+G +K+E
Sbjct: 200  -------------------SKTADADTPAPAPAGTEKEDAKPAESEAAPPAPSEGGEKKE 240

Query: 852  VAPPAPSEGEKKEEVAPPASNPTENSVXXXXXXXXXXXXXXXXPVENSADKGAHQDSQPT 1031
             A PA     + E  A P SNPTE S                 PVENSADKG HQDSQP 
Sbjct: 241  DAKPA-----EPEAAAAPPSNPTEPSA---------PKAAAAAPVENSADKGPHQDSQPP 286

Query: 1032 GA---TKESSAVSNGQVPPGASSVKCT 1103
             A    KESS V+NGQ+P GAS+VKCT
Sbjct: 287  SAAAPAKESSPVNNGQLPAGASAVKCT 313


>ref|NP_001105174.1| methyl binding domain [Zea mays]
 gb|AAK40307.1| putative methyl-binding domain protein MBD105 [Zea mays]
          Length = 433

 Score =  209 bits (533), Expect = 3e-52
 Identities = 130/268 (48%), Positives = 142/268 (52%), Gaps = 10/268 (3%)
 Frame = +3

Query: 156 MPAPQGWTKKFTPQRVGRSEIVFVSPTGEEIKNKRQLNQYLKAHPGGPASSEFDWGTGDT 335
           MPAP GWTKKFTP R GRSEIVFVSPTGEEIKNKRQL+QYLKAHPGGPA SEFDWGTGDT
Sbjct: 1   MPAPDGWTKKFTPLRGGRSEIVFVSPTGEEIKNKRQLSQYLKAHPGGPAVSEFDWGTGDT 60

Query: 336 PRRSARISEKVKAFDSPEGEKIPKRSRNSTGRKGXXXXXXXXXXXXXXXXXXXXXXXXXX 515
           PRRSARISEKVK FDSPEGEKIPKRSRNS+GRKG                          
Sbjct: 61  PRRSARISEKVKVFDSPEGEKIPKRSRNSSGRKG-------------------------- 94

Query: 516 XXXXXXXXXXXXXXXXXXXXXXXXXGEEVKEAPSEDAAKGTDVEMXXXXXXXXXXXXXXX 695
                                    G+E +EAPSEDAAK TDVEM               
Sbjct: 95  -------KQGKKETPETEEAKDAETGKEAEEAPSEDAAKETDVEM--------------- 132

Query: 696 XXXXXXXXXXXXXXXXDGKPAESDVAPPAPSEGEKKEEVAPPAPSDGEKKEE-------V 854
                             KPAE      A +E     +   PAP + +KK+         
Sbjct: 133 ------------------KPAEEVKGASAETEDADMADAPAPAPMEEDKKQTEELAEAIA 174

Query: 855 APPAPSEGEKKEEVAPP---ASNPTENS 929
           APP PSE +K  + A P   ASNPTE+S
Sbjct: 175 APPVPSEEKKDVKPAEPEAAASNPTEDS 202


>ref|NP_001105175.1| methyl binding domain [Zea mays]
 gb|AAK40308.1| putative methyl-binding domain protein MBD106 [Zea mays]
          Length = 428

 Score =  202 bits (514), Expect = 5e-50
 Identities = 132/281 (46%), Positives = 146/281 (51%), Gaps = 23/281 (8%)
 Frame = +3

Query: 156 MPAPQGWTKKFTPQRVGRSEIVFVSPTGEEIKNKRQLNQYLKAHPGGPASSEFDWGTGDT 335
           MPAP GWTKKFTPQR GRSEIVFVSPTGEEIKNKRQL+QYLKAHPGGPA+S+FDWGTGDT
Sbjct: 1   MPAPDGWTKKFTPQRGGRSEIVFVSPTGEEIKNKRQLSQYLKAHPGGPAASDFDWGTGDT 60

Query: 336 PRRSARISEKVKAFDSPEGEKIPKRSRNSTGRKGXXXXXXXXXXXXXXXXXXXXXXXXXX 515
           PRRSARISEKVK FDSPEGEKIPKRSRNS+GRKG                          
Sbjct: 61  PRRSARISEKVKVFDSPEGEKIPKRSRNSSGRKG-------------------------- 94

Query: 516 XXXXXXXXXXXXXXXXXXXXXXXXXGEEVKEAPSEDAAKGTDVEMXXXXXXXXXXXXXXX 695
                                     E  ++APSED  K TDVEM               
Sbjct: 95  ----------RQGKKEAPETEEAKDAETGQDAPSEDGTKETDVEM--------------- 129

Query: 696 XXXXXXXXXXXXXXXXDGKPAESDVAPPAPSE-------GEKKEEVAPPAPSDGEKKEE- 851
                             KPAE   A  AP+E        +K ++   PAP + ++KE  
Sbjct: 130 ------------------KPAEE--AKEAPTETDDAEKAADKADDTPAPAPMEEDEKETE 169

Query: 852 ------VAPPAPSEGEKKEEVAP---------PASNPTENS 929
                 VAP A SE EKKE+  P         P SNPTENS
Sbjct: 170 KPAEAVVAPLAQSE-EKKEDAKPDEPEAVAPAPVSNPTENS 209