BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst005f17
         (671 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001060271.1| Os07g0615800 [Oryza sativa (japonica cultiva...   235   1e-60
emb|CAN66735.1| hypothetical protein [Vitis vinifera] >gi|157353...   169   2e-40
gb|ABA98929.1| DNA-directed RNA polymerase II 14.5 kDa polypepti...   167   6e-40
gb|EDQ52833.1| predicted protein [Physcomitrella patens subsp. p...   166   1e-39
gb|ABD32320.1| DNA-directed RNA polymerase, subunit C11/M/9 [Med...   166   1e-39

>ref|NP_001060271.1| Os07g0615800 [Oryza sativa (japonica cultivar-group)]
 dbj|BAC16509.1| putative RNA Polymerase II subunit 14.5 kD [Oryza sativa (japonica
           cultivar-group)]
 dbj|BAC21480.1| putative RNA Polymerase II subunit 14.5 kD [Oryza sativa (japonica
           cultivar-group)]
 dbj|BAF22185.1| Os07g0615800 [Oryza sativa (japonica cultivar-group)]
          Length = 116

 Score =  235 bits (600), Expect = 1e-60
 Identities = 104/116 (89%), Positives = 111/116 (95%)
 Frame = +3

Query: 42  ITMSALKFCGECNNMLYPREDKETRTLLYACQSCEHQEVATDTCVYKRVIRKPAGEPKDI 221
           + MSALKFCGEC+NMLYPREDKET TLLYAC SCEHQE ATDTCVYKRV+RKPAGEPKDI
Sbjct: 1   MAMSALKFCGECSNMLYPREDKETHTLLYACNSCEHQEPATDTCVYKRVLRKPAGEPKDI 60

Query: 222 LKDAATDPSLPRTRSVKCYNCNYPEAAFFQAPTKGEQGLTLYFICCNPSCGHRWRD 389
           LKDAATDP+LPRTRS+KCYNC +PEAAFFQAPTKGE+GLTLYFICCNPSCGHRWRD
Sbjct: 61  LKDAATDPTLPRTRSIKCYNCGHPEAAFFQAPTKGEKGLTLYFICCNPSCGHRWRD 116


>emb|CAN66735.1| hypothetical protein [Vitis vinifera]
 emb|CAO44896.1| unnamed protein product [Vitis vinifera]
          Length = 114

 Score =  169 bits (427), Expect = 2e-40
 Identities = 68/114 (59%), Positives = 91/114 (79%)
 Frame = +3

Query: 48  MSALKFCGECNNMLYPREDKETRTLLYACQSCEHQEVATDTCVYKRVIRKPAGEPKDILK 227
           MS +KFC ECNN+LYP+ED+E + LLYAC++C+HQEVA + CVY+  I    GE   +L+
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAENNCVYRNEIHHSVGERTQVLQ 60

Query: 228 DAATDPSLPRTRSVKCYNCNYPEAAFFQAPTKGEQGLTLYFICCNPSCGHRWRD 389
           D A DP+LPRT+SV+C  CN+ EA FFQA  +GE+G+TL+F+CCNP+CG+RWRD
Sbjct: 61  DVAADPTLPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114


>gb|ABA98929.1| DNA-directed RNA polymerase II 14.5 kDa polypeptide, putative,
           expressed [Oryza sativa (japonica cultivar-group)]
 gb|EAY83508.1| hypothetical protein OsI_037467 [Oryza sativa (indica
           cultivar-group)]
 gb|EAZ20865.1| hypothetical protein OsJ_035074 [Oryza sativa (japonica
           cultivar-group)]
          Length = 114

 Score =  167 bits (422), Expect = 6e-40
 Identities = 67/114 (58%), Positives = 92/114 (80%)
 Frame = +3

Query: 48  MSALKFCGECNNMLYPREDKETRTLLYACQSCEHQEVATDTCVYKRVIRKPAGEPKDILK 227
           MS +KFC ECNN+LYP+ED++ + LLYAC++C+HQEVA + CVY+ V+   AGE   +L+
Sbjct: 1   MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNNCVYRNVVHHSAGEFTQVLQ 60

Query: 228 DAATDPSLPRTRSVKCYNCNYPEAAFFQAPTKGEQGLTLYFICCNPSCGHRWRD 389
           D A DP+LPRT++V+C  C + EA FFQA  +GE+G+TL+F+CCNPSCGHRWR+
Sbjct: 61  DVAGDPTLPRTKAVRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRE 114


>gb|EDQ52833.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 114

 Score =  166 bits (419), Expect = 1e-39
 Identities = 66/114 (57%), Positives = 92/114 (80%)
 Frame = +3

Query: 48  MSALKFCGECNNMLYPREDKETRTLLYACQSCEHQEVATDTCVYKRVIRKPAGEPKDILK 227
           MS +KFC ECNN+LYPRED++ + LLYAC++C+HQEVA + CVY+  +   A E   +L+
Sbjct: 1   MSTMKFCRECNNILYPREDRDKKVLLYACRNCDHQEVADNNCVYRNEVLHSADERTQVLQ 60

Query: 228 DAATDPSLPRTRSVKCYNCNYPEAAFFQAPTKGEQGLTLYFICCNPSCGHRWRD 389
           D A+DP+LPRT++V+C NC + EA FFQA  +GE+G+TL+F+CCNP+CG+RWRD
Sbjct: 61  DIASDPTLPRTKNVRCANCQHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114


>gb|ABD32320.1| DNA-directed RNA polymerase, subunit C11/M/9 [Medicago truncatula]
          Length = 114

 Score =  166 bits (419), Expect = 1e-39
 Identities = 66/114 (57%), Positives = 89/114 (78%)
 Frame = +3

Query: 48  MSALKFCGECNNMLYPREDKETRTLLYACQSCEHQEVATDTCVYKRVIRKPAGEPKDILK 227
           MS +KFC ECNN+LYP+ED+E + LLYAC++C+HQE A + CVY+  I     E   +L+
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQ 60

Query: 228 DAATDPSLPRTRSVKCYNCNYPEAAFFQAPTKGEQGLTLYFICCNPSCGHRWRD 389
           D A DP+LPRT++V+C  CN+ EA FFQA  +GE+G+TL+F+CCNP+CGHRWRD
Sbjct: 61  DVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114