BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst005b04
         (936 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA46876.1| DNA-binding protein [Zea mays]                        129   4e-28
sp|P40621|HMGL_WHEAT HMG1/2-like protein >gi|21803|emb|CAA77641....   128   5e-28
ref|NP_001058640.1| Os06g0728000 [Oryza sativa (japonica cultiva...   127   1e-27
emb|CAA90679.1| HMG1/2-like protein [Hordeum vulgare subsp. vulg...   124   9e-27
sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B (HMG1-like prote...   123   1e-26

>emb|CAA46876.1| DNA-binding protein [Zea mays]
          Length = 168

 Score =  129 bits (323), Expect = 4e-28
 Identities = 75/119 (63%), Positives = 78/119 (65%)
 Frame = +1

Query: 148 SAQESAMKGAKPRGAAKADAKLAVKSXXXXXXXXXXXXXXXXXDPNKPKRAPSAXXXXXX 327
           S  ESAMKGAK +GAAKADAKLAVKS                 DPNKPKRAPSA      
Sbjct: 6   SPLESAMKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGK-DPNKPKRAPSAFFVFME 64

Query: 328 XXXXXXXXXXXXXXSVAAVGKAAGDRWKSLSDADKAPYVAKANKLKGEYNKAIAAYNKG 504
                         SVAAVGKAAGDRWKSLS++DKAPYVAKANKLK EYNKAIAAYNKG
Sbjct: 65  EFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKG 123


>sp|P40621|HMGL_WHEAT HMG1/2-like protein
 emb|CAA77641.1| high mobility group protein [Triticum aestivum]
 dbj|BAF30985.1| high mobility globular protein [Triticum aestivum]
          Length = 161

 Score =  128 bits (322), Expect = 5e-28
 Identities = 70/113 (61%), Positives = 75/113 (66%)
 Frame = +1

Query: 166 MKGAKPRGAAKADAKLAVKSXXXXXXXXXXXXXXXXXDPNKPKRAPSAXXXXXXXXXXXX 345
           MKGAK +GAAKADAKLAVKS                 DPNKPKRAPSA            
Sbjct: 1   MKGAKSKGAAKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEF 60

Query: 346 XXXXXXXXSVAAVGKAAGDRWKSLSDADKAPYVAKANKLKGEYNKAIAAYNKG 504
                   SVAAVGKAAG+RWKSLS+++KAPYVAKANKLKGEYNKAIAAYNKG
Sbjct: 61  KQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKG 113


>ref|NP_001058640.1| Os06g0728000 [Oryza sativa (japonica cultivar-group)]
 gb|AAC78104.1| high mobility group protein [Oryza sativa]
 gb|AAN28722.1| HMG1 protein [Oryza sativa (indica cultivar-group)]
 gb|AAP21609.1| HMGB1 [Oryza sativa (indica cultivar-group)]
 dbj|BAD61823.1| HMGB1 [Oryza sativa (japonica cultivar-group)]
 dbj|BAF20554.1| Os06g0728000 [Oryza sativa (japonica cultivar-group)]
          Length = 157

 Score =  127 bits (319), Expect = 1e-27
 Identities = 70/113 (61%), Positives = 73/113 (64%)
 Frame = +1

Query: 166 MKGAKPRGAAKADAKLAVKSXXXXXXXXXXXXXXXXXDPNKPKRAPSAXXXXXXXXXXXX 345
           MKGAK +GAAK DAKLAVKS                 DPNKPKRAPSA            
Sbjct: 1   MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 60

Query: 346 XXXXXXXXSVAAVGKAAGDRWKSLSDADKAPYVAKANKLKGEYNKAIAAYNKG 504
                   SVAAVGKAAGDRWKSL++ADKAPYVAKANKLK EYNKAIAAYNKG
Sbjct: 61  KEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNKAIAAYNKG 113


>emb|CAA90679.1| HMG1/2-like protein [Hordeum vulgare subsp. vulgare]
          Length = 160

 Score =  124 bits (311), Expect = 9e-27
 Identities = 67/113 (59%), Positives = 74/113 (65%)
 Frame = +1

Query: 166 MKGAKPRGAAKADAKLAVKSXXXXXXXXXXXXXXXXXDPNKPKRAPSAXXXXXXXXXXXX 345
           MKGAK +GAAKAD KLAVKS                 DPNKPKRAPSA            
Sbjct: 1   MKGAKSKGAAKADTKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEF 60

Query: 346 XXXXXXXXSVAAVGKAAGDRWKSLSDADKAPYVAKANKLKGEYNKAIAAYNKG 504
                   SVAAVGKAAG+RWKSLS+++KAP+VAKANKLKGEYNKAIA+YNKG
Sbjct: 61  KQKNPKNKSVAAVGKAAGERWKSLSESEKAPFVAKANKLKGEYNKAIASYNKG 113


>sp|P27347|MNB1B_MAIZE DNA-binding protein MNB1B (HMG1-like protein)
 emb|CAA41220.1| high mobility group protein [Zea mays]
 emb|CAB46752.1| HMGa protein [Zea mays]
 gb|AAM95942.1| nucleosome/chromatin assembly factor group D protein [Zea mays]
          Length = 157

 Score =  123 bits (309), Expect = 1e-26
 Identities = 71/113 (62%), Positives = 74/113 (65%)
 Frame = +1

Query: 166 MKGAKPRGAAKADAKLAVKSXXXXXXXXXXXXXXXXXDPNKPKRAPSAXXXXXXXXXXXX 345
           MKGAK +GAAKADAKLAVKS                 DPNKPKRAPSA            
Sbjct: 1   MKGAKSKGAAKADAKLAVKSKGAEKPAKGRKGKAGK-DPNKPKRAPSAFFVFMEEFRKEF 59

Query: 346 XXXXXXXXSVAAVGKAAGDRWKSLSDADKAPYVAKANKLKGEYNKAIAAYNKG 504
                   SVAAVGKAAGDRWKSLS++DKAPYVAKANKLK EYNKAIAAYNKG
Sbjct: 60  KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKG 112