BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst003a21
         (680 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001054379.1| Os05g0101400 [Oryza sativa (japonica cultiva...   212   2e-53
ref|NP_565765.1| 50S ribosomal protein L28, chloroplast (CL28) [...   166   1e-39
gb|ABK95755.1| unknown [Populus trichocarpa]                          162   1e-38
gb|ABK96762.1| unknown [Populus trichocarpa x Populus deltoides]      162   1e-38
sp|P30956|RK28_TOBAC 50S ribosomal protein L28, chloroplast prec...   157   5e-37

>ref|NP_001054379.1| Os05g0101400 [Oryza sativa (japonica cultivar-group)]
 gb|AAG03094.2|AC073405_10 putative ribosomal protein L28 [Oryza sativa (japonica
           cultivar-group)]
 gb|AAW56888.1| unknown protein [Oryza sativa (japonica cultivar-group)]
 dbj|BAF16293.1| Os05g0101400 [Oryza sativa (japonica cultivar-group)]
 gb|EAZ32549.1| hypothetical protein OsJ_016032 [Oryza sativa (japonica
           cultivar-group)]
          Length = 137

 Score =  212 bits (539), Expect = 2e-53
 Identities = 109/139 (78%), Positives = 122/139 (87%)
 Frame = +3

Query: 75  MATMLCSYSMPAARAPLRRTNAAASPSLGFATSQLDGLTLGLASATASVSTNRTSPLQPI 254
           MATMLCS++ PA RAPL RT++++S SLGFATSQL GL+LGL++A  +  +     L PI
Sbjct: 1   MATMLCSFT-PATRAPLLRTSSSSS-SLGFATSQLAGLSLGLSAAATTAPSAAGPKLHPI 58

Query: 255 VARRICPFTDKKTNRANKVSFSNHKTKKQQFVNLQYKKLWWEAGKRFVKLRLSTKALRTI 434
           +ARRICPFTDKKTNRANKVSFSNHKTKKQQFVNLQYKKLWWE GKRFVKLRLSTKAL+TI
Sbjct: 59  LARRICPFTDKKTNRANKVSFSNHKTKKQQFVNLQYKKLWWEEGKRFVKLRLSTKALKTI 118

Query: 435 EKHGLDTVAKKAGIDLNKK 491
           EKHGLD VAKKAGIDLNKK
Sbjct: 119 EKHGLDAVAKKAGIDLNKK 137


>ref|NP_565765.1| 50S ribosomal protein L28, chloroplast (CL28) [Arabidopsis
           thaliana]
 sp|O22795|RK28_ARATH 50S ribosomal protein L28, chloroplast precursor (CL28)
 gb|AAL62365.1| putative chloroplast 50S ribosomal protein L28 [Arabidopsis
           thaliana]
 gb|AAB80662.2| putative chloroplast 50S ribosomal protein L28 [Arabidopsis
           thaliana]
 gb|AAM47937.1| putative chloroplast 50S ribosomal protein L28 [Arabidopsis
           thaliana]
 gb|AAM64654.1| putative chloroplast 50S ribosomal protein L28 [Arabidopsis
           thaliana]
          Length = 143

 Score =  166 bits (419), Expect = 1e-39
 Identities = 95/144 (65%), Positives = 104/144 (72%), Gaps = 13/144 (9%)
 Frame = +3

Query: 99  SMPAARAPLRRTNAA--------ASPSLGFATSQLDGLTLGLASATASVSTNRTS----- 239
           +M    A LR T++A         S  LGF TSQL GL +   S T S   NR S     
Sbjct: 3   TMATQGAWLRMTSSAKSMTKSTVTSKELGFLTSQLSGLRI---SYTPSDVINRISLPSFP 59

Query: 240 PLQPIVARRICPFTDKKTNRANKVSFSNHKTKKQQFVNLQYKKLWWEAGKRFVKLRLSTK 419
            +QPIVARRICPFT KK NRANKVSFSNHKTKK QFVNLQYK++WWEAGKRFVKLRLSTK
Sbjct: 60  GIQPIVARRICPFTGKKANRANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTK 119

Query: 420 ALRTIEKHGLDTVAKKAGIDLNKK 491
           AL+TIEK+GLD VAKKAGIDL KK
Sbjct: 120 ALKTIEKNGLDAVAKKAGIDLRKK 143


>gb|ABK95755.1| unknown [Populus trichocarpa]
          Length = 150

 Score =  162 bits (411), Expect = 1e-38
 Identities = 80/123 (65%), Positives = 97/123 (78%)
 Frame = +3

Query: 123 LRRTNAAASPSLGFATSQLDGLTLGLASATASVSTNRTSPLQPIVARRICPFTDKKTNRA 302
           + +T+  +   +GF TSQL G+ +   +    +S   +  LQP++ARRICPFT KK NRA
Sbjct: 29  ISKTSLVSVSEIGFVTSQLSGIRISY-NPPKPLSAPFSPALQPVIARRICPFTGKKANRA 87

Query: 303 NKVSFSNHKTKKQQFVNLQYKKLWWEAGKRFVKLRLSTKALRTIEKHGLDTVAKKAGIDL 482
           NKVSFSNHKTKK QFVNLQYK++WWEAGKR+VKLRLSTKAL+TIEK+GLD VAKKAGIDL
Sbjct: 88  NKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDL 147

Query: 483 NKK 491
            KK
Sbjct: 148 RKK 150


>gb|ABK96762.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 153

 Score =  162 bits (411), Expect = 1e-38
 Identities = 80/123 (65%), Positives = 97/123 (78%)
 Frame = +3

Query: 123 LRRTNAAASPSLGFATSQLDGLTLGLASATASVSTNRTSPLQPIVARRICPFTDKKTNRA 302
           + +T+  +   +GF TSQL G+ +   +    +S   +  LQP++ARRICPFT KK NRA
Sbjct: 32  ISKTSLVSVSEIGFVTSQLSGIRISY-NPPEPLSAPFSPALQPVIARRICPFTGKKANRA 90

Query: 303 NKVSFSNHKTKKQQFVNLQYKKLWWEAGKRFVKLRLSTKALRTIEKHGLDTVAKKAGIDL 482
           NKVSFSNHKTKK QFVNLQYK++WWEAGKR+VKLRLSTKAL+TIEK+GLD VAKKAGIDL
Sbjct: 91  NKVSFSNHKTKKLQFVNLQYKRVWWEAGKRYVKLRLSTKALKTIEKNGLDAVAKKAGIDL 150

Query: 483 NKK 491
            KK
Sbjct: 151 RKK 153


>sp|P30956|RK28_TOBAC 50S ribosomal protein L28, chloroplast precursor (CL28)
 pir||R5NT28 ribosomal protein L28 precursor, chloroplast - tobacco
 emb|CAA48211.1| ribosomal protein CL28 [Nicotiana tabacum]
          Length = 151

 Score =  157 bits (397), Expect = 5e-37
 Identities = 89/152 (58%), Positives = 104/152 (68%), Gaps = 13/152 (8%)
 Frame = +3

Query: 75  MATMLCSYSMPAARAPLRRT----------NAAASPSLGFATSQLDGLTLG---LASATA 215
           MATM+   S+        RT           +  S  L F TSQL GL +      S++A
Sbjct: 1   MATMVAGISLRGPVMSSHRTFSVTKRASLPQSKLSSELSFVTSQLSGLKISSTHFISSSA 60

Query: 216 SVSTNRTSPLQPIVARRICPFTDKKTNRANKVSFSNHKTKKQQFVNLQYKKLWWEAGKRF 395
            +S      LQP VARRICPFT KK+NRANKVS SNHKTKK QFVNLQYK++WWEAGKR+
Sbjct: 61  PLSVPFKPSLQP-VARRICPFTGKKSNRANKVSHSNHKTKKLQFVNLQYKRIWWEAGKRY 119

Query: 396 VKLRLSTKALRTIEKHGLDTVAKKAGIDLNKK 491
           VKLRLSTKA++TIEK+GLD VAKKAGIDL+KK
Sbjct: 120 VKLRLSTKAIKTIEKNGLDAVAKKAGIDLSKK 151