BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst002l06
         (827 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001055168.1| Os05g0314100 [Oryza sativa (japonica cultiva...   197   5e-49
ref|NP_566107.1| small nuclear ribonucleoprotein D2, putative / ...   195   2e-48
gb|AAV32147.1| putative small nuclear ribonucleoprotein D2 [Oryz...   195   3e-48
gb|AAM63661.1| small nuclear ribonucleoprotein-like protein [Ara...   192   2e-47
gb|EAY97498.1| hypothetical protein OsI_018731 [Oryza sativa (in...   192   2e-47

>ref|NP_001055168.1| Os05g0314100 [Oryza sativa (japonica cultivar-group)]
 dbj|BAF17082.1| Os05g0314100 [Oryza sativa (japonica cultivar-group)]
          Length = 140

 Score =  197 bits (502), Expect = 5e-49
 Identities = 98/106 (92%), Positives = 98/106 (92%)
 Frame = +2

Query: 146 PMAEETNQGXXXXXXFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 325
           PMAEE  QG      FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE
Sbjct: 35  PMAEEATQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 94

Query: 326 NVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 463
           NVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 95  NVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 140


>ref|NP_566107.1| small nuclear ribonucleoprotein D2, putative / snRNP core protein
           D2, putative / Sm protein D2, putative [Arabidopsis
           thaliana]
 ref|NP_001078076.1| small nuclear ribonucleoprotein D2, putative / snRNP core protein
           D2, putative / Sm protein D2, putative [Arabidopsis
           thaliana]
 ref|NP_567134.3| unknown protein [Arabidopsis thaliana]
 gb|AAM14847.1| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
 gb|AAC63620.2| putative small nuclear ribonucleoprotein D2 [Arabidopsis thaliana]
          Length = 109

 Score =  195 bits (496), Expect = 2e-48
 Identities = 95/106 (89%), Positives = 99/106 (93%)
 Frame = +2

Query: 146 PMAEETNQGXXXXXXFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 325
           PM E+TNQG      F+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLE
Sbjct: 4   PMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLE 63

Query: 326 NVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 463
           NVREMWTEVPKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 64  NVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109


>gb|AAV32147.1| putative small nuclear ribonucleoprotein D2 [Oryza sativa (japonica
           cultivar-group)]
          Length = 105

 Score =  195 bits (495), Expect = 3e-48
 Identities = 97/105 (92%), Positives = 97/105 (92%)
 Frame = +2

Query: 149 MAEETNQGXXXXXXFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 328
           MAEE  QG      FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN
Sbjct: 1   MAEEATQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 60

Query: 329 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 463
           VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 105


>gb|AAM63661.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
 gb|AAM64733.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
          Length = 105

 Score =  192 bits (489), Expect = 2e-47
 Identities = 94/105 (89%), Positives = 98/105 (93%)
 Frame = +2

Query: 149 MAEETNQGXXXXXXFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 328
           M E+TNQG      F+TGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLEN
Sbjct: 1   MEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLEN 60

Query: 329 VREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 463
           VREMWTEVPKTGKGKKKALPVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  VREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 105


>gb|EAY97498.1| hypothetical protein OsI_018731 [Oryza sativa (indica
           cultivar-group)]
 gb|EAZ33769.1| hypothetical protein OsJ_017252 [Oryza sativa (japonica
           cultivar-group)]
          Length = 106

 Score =  192 bits (488), Expect = 2e-47
 Identities = 98/106 (92%), Positives = 98/106 (92%), Gaps = 1/106 (0%)
 Frame = +2

Query: 149 MAEE-TNQGXXXXXXFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 325
           MAEE T QG      FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE
Sbjct: 1   MAEEATQQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 60

Query: 326 NVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 463
           NVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  NVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 106