BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst002e22
         (926 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA93966.1| retrotransposon protein, putative, Ty1-copia subc...   104   2e-37
gb|AAV31347.1| putative polyprotein [Oryza sativa (japonica cult...   102   3e-36
gb|AAV59441.1| putative polyprotein [Oryza sativa (japonica cult...   100   7e-36
gb|ABA93737.1| retrotransposon protein, putative, Ty1-copia subc...   104   2e-35
gb|ABA93790.1| retrotransposon protein, putative, Ty1-copia subc...   105   1e-34

>gb|ABA93966.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           (japonica cultivar-group)]
          Length = 1212

 Score =  104 bits (260), Expect(2) = 2e-37
 Identities = 51/99 (51%), Positives = 71/99 (71%)
 Frame = +3

Query: 621 GGSVLMGNRAATTVREIGQVCLKLTSGKTLILKDVLYVPATTRNLMSGSMLCRQGIKLVF 800
           G +VLMGN +  +V  +G V LK TSGK + LK+V +VP+  RNL+SGS L R G KLVF
Sbjct: 311 GSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVF 370

Query: 801 ESNKAMLTKFSNFVGKGYDSGGMFRLSILDFNNVNIFNV 917
           ESNK +++K   F+GKGY+ GG+FR S+ DF N ++ ++
Sbjct: 371 ESNKVVISKHGYFIGKGYECGGLFRFSLSDFCNKSVNHI 409



 Score = 77.0 bits (188), Expect(2) = 2e-37
 Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
 Frame = +1

Query: 193 ENFQVNVILAKLPPSWHDFVTARRHIKERLTLNKLSAAINVEERARASD-------GTGN 351
           + F    I+AKLPPSW  F TA +H ++  ++  L A+++VEE+AR  D       G  N
Sbjct: 143 DKFVAGCIIAKLPPSWRGFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSN 202

Query: 352 AQVQVHQVEVKSAGDY---GKPNFKNRPQNKIQGKKMEKKKE*IVCFVCGVVGYKANHCG 522
           A V VH+ + KS G Y      NFK + +N     + E+      CFVCG  G+ A  C 
Sbjct: 203 ANV-VHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDER-----TCFVCGQPGHLARKCP 256

Query: 523 NRKD-KGPSPGQHKSRKLEVN 582
            RK  K P+   +KS  + ++
Sbjct: 257 QRKGMKAPARQTYKSANVTID 277


>gb|AAV31347.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1059

 Score =  102 bits (255), Expect(2) = 3e-36
 Identities = 50/99 (50%), Positives = 71/99 (71%)
 Frame = +3

Query: 621 GGSVLMGNRAATTVREIGQVCLKLTSGKTLILKDVLYVPATTRNLMSGSMLCRQGIKLVF 800
           G +VLMGN +  +V  +G V LK TSGK + LK+V +VP+  RNL+SGS L R G KLVF
Sbjct: 434 GSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVF 493

Query: 801 ESNKAMLTKFSNFVGKGYDSGGMFRLSILDFNNVNIFNV 917
           ESNK +++K   F+GKG++ GG+FR S+ DF N ++ ++
Sbjct: 494 ESNKVVVSKHGYFIGKGFECGGLFRFSLSDFCNKSVNHI 532



 Score = 74.7 bits (182), Expect(2) = 3e-36
 Identities = 49/140 (35%), Positives = 71/140 (50%), Gaps = 11/140 (7%)
 Frame = +1

Query: 193 ENFQVNVILAKLPPSWHDFVTARRHIKERLTLNKLSAAINVEERARASD-------GTGN 351
           + F    I+ KLPPSW  F TA +H ++  ++  L A+++VEE+AR  D       G  +
Sbjct: 266 DKFVAGCIIVKLPPSWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSS 325

Query: 352 AQVQVHQVEVKSAGDY---GKPNFKNRPQNKIQGKKMEKKKE*IVCFVCGVVGYKANHCG 522
           A V VH+ + KS G Y      NFK + +N     + E+      CFVCG VG+ A  C 
Sbjct: 326 ANV-VHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDER-----TCFVCGQVGHLARKCP 379

Query: 523 NRKD-KGPSPGQHKSRKLEV 579
            RK  K P+    KS  + +
Sbjct: 380 QRKGMKAPAGQTSKSANVTI 399


>gb|AAV59441.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1225

 Score =  100 bits (248), Expect(2) = 7e-36
 Identities = 49/91 (53%), Positives = 65/91 (71%)
 Frame = +3

Query: 621 GGSVLMGNRAATTVREIGQVCLKLTSGKTLILKDVLYVPATTRNLMSGSMLCRQGIKLVF 800
           G +VLMGN +  +V  +G V L  TSGK + LK+V +VP+  RNL+SGS L R G KLVF
Sbjct: 303 GSTVLMGNGSHASVHGVGMVDLMFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVF 362

Query: 801 ESNKAMLTKFSNFVGKGYDSGGMFRLSILDF 893
           ESNK +++K   F+GKGY+ GG+FR S+ DF
Sbjct: 363 ESNKVVVSKHGYFIGKGYECGGLFRFSLSDF 393



 Score = 76.3 bits (186), Expect(2) = 7e-36
 Identities = 50/140 (35%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
 Frame = +1

Query: 193 ENFQVNVILAKLPPSWHDFVTARRHIKERLTLNKLSAAINVEERARASD-------GTGN 351
           + F    I+AKLPPSW  F TA +H ++  ++  L A+++VEE+AR  D       G  +
Sbjct: 143 DKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSS 202

Query: 352 AQVQVHQVEVKSAGDY---GKPNFKNRPQNKIQGKKMEKKKE*IVCFVCGVVGYKANHCG 522
           A V VH+ + KS G Y      NFK + +N     + E+      CFVCG VG+ A  C 
Sbjct: 203 ANV-VHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDER-----TCFVCGQVGHLARKCP 256

Query: 523 NRKD-KGPSPGQHKSRKLEV 579
            RK  K P+    KS  + +
Sbjct: 257 QRKGMKAPAGQTSKSANVTI 276


>gb|ABA93737.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           (japonica cultivar-group)]
          Length = 1579

 Score =  104 bits (259), Expect(2) = 2e-35
 Identities = 51/99 (51%), Positives = 71/99 (71%)
 Frame = +3

Query: 621 GGSVLMGNRAATTVREIGQVCLKLTSGKTLILKDVLYVPATTRNLMSGSMLCRQGIKLVF 800
           G +VLMGN +  +V  +G V LK TSGK + LK+V +VP+  RNL+SGS L R G KLVF
Sbjct: 611 GSTVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVF 670

Query: 801 ESNKAMLTKFSNFVGKGYDSGGMFRLSILDFNNVNIFNV 917
           ESNK +++K   F+GKGY+ GG+FR S+ DF N ++ ++
Sbjct: 671 ESNKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHI 709



 Score = 70.5 bits (171), Expect(2) = 2e-35
 Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 11/140 (7%)
 Frame = +1

Query: 193 ENFQVNVILAKLPPSWHDFVTARRHIKERLTLNKLSAAINVEERARASD-------GTGN 351
           + F    I+AKLPPSW  F TA ++ ++  ++  L A+++VEE+AR  D       G  +
Sbjct: 443 DKFVAGCIIAKLPPSWRSFGTAFKYKRQEYSVEGLIASLDVEEKAREKDAASKGDGGQSS 502

Query: 352 AQVQVHQVEVKSAGDY---GKPNFKNRPQNKIQGKKMEKKKE*IVCFVCGVVGYKANHCG 522
           A V VH+ + KS G Y      NFK + +N     + E+      CFVCG V + A  C 
Sbjct: 503 ANV-VHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDER-----TCFVCGQVRHLARKCP 556

Query: 523 NRKD-KGPSPGQHKSRKLEV 579
            RK  K P+    KS  + +
Sbjct: 557 QRKGMKAPAGQTSKSANVTI 576


>gb|ABA93790.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           (japonica cultivar-group)]
          Length = 1370

 Score =  105 bits (263), Expect(2) = 1e-34
 Identities = 50/93 (53%), Positives = 68/93 (73%)
 Frame = +3

Query: 621 GGSVLMGNRAATTVREIGQVCLKLTSGKTLILKDVLYVPATTRNLMSGSMLCRQGIKLVF 800
           G S+LMGNR+   V  +G V LK TS K + LK+V +VP+  +NL+SGS+LCR G +LVF
Sbjct: 393 GSSLLMGNRSLAAVHGVGTVDLKFTSRKIVQLKNVQHVPSIKKNLVSGSLLCRDGFRLVF 452

Query: 801 ESNKAMLTKFSNFVGKGYDSGGMFRLSILDFNN 899
           ESNK +++K+  F+ KGYDSGG+FR S+ D  N
Sbjct: 453 ESNKCIVSKYGTFIAKGYDSGGLFRFSLDDMCN 485



 Score = 66.6 bits (161), Expect(2) = 1e-34
 Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
 Frame = +1

Query: 193 ENFQVNVILAKLPPSWHDFVTARRHIKERLTLNKLSAAINVEERARASDGTG---NAQVQ 363
           + F    I+AKLPPSW DF T+ +H ++  ++  L  +++VEE+ARA D  G        
Sbjct: 263 DKFVAGGIIAKLPPSWTDFATSLKHKRQEFSITDLIGSLSVEEKARAKDNWGKKIEGGSS 322

Query: 364 VHQVEVKSAGDYGKPNFKNRPQNKIQG----KKMEKKKE*IVCFVCGVVGYKANHCGNRK 531
            + V+ K+       N K +P  K +     KK  K K    CF+CG  G+ A  C   K
Sbjct: 323 ANLVQKKNPHASHNNNKKVKPDVKPKATTNFKKKGKGKTKGGCFMCGKSGHWAKDCPELK 382

Query: 532 DK 537
           DK
Sbjct: 383 DK 384