BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst002e02
         (589 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pdb|2GO5|6 Chain 6, Structure Of Signal Recognition Particle Rec...   238   2e-61
ref|NP_001047935.1| Os02g0717800 [Oryza sativa (japonica cultiva...   231   2e-59
ref|NP_001105280.1| hypothetical protein LOC542196 [Zea mays] >g...   226   6e-58
ref|NP_001057508.1| Os06g0319700 [Oryza sativa (japonica cultiva...   225   1e-57
gb|EAZ00722.1| hypothetical protein OsI_021954 [Oryza sativa (in...   223   5e-57

>pdb|2GO5|6 Chain 6, Structure Of Signal Recognition Particle Receptor (Sr) In
           Complex With Signal Recognition Particle (Srp) And
           Ribosome Nascent Chain Complex
 pdb|2J37|6 Chain 6, Model Of Mammalian Srp Bound To 80s Rncs
          Length = 123

 Score =  238 bits (606), Expect = 2e-61
 Identities = 118/123 (95%), Positives = 120/123 (97%)
 Frame = +3

Query: 75  MSEKKRAAGTRKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRID 254
           MSEKKRA G RKDEVVTREYT+NLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGT DVRID
Sbjct: 1   MSEKKRAPGPRKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRID 60

Query: 255 VKLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEIPQEGLKGLGTKVVE 434
           VKLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAE+PQEGLKGLGTKVVE
Sbjct: 61  VKLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVE 120

Query: 435 DED 443
           DED
Sbjct: 121 DED 123


>ref|NP_001047935.1| Os02g0717800 [Oryza sativa (japonica cultivar-group)]
 dbj|BAD12898.1| putative 60S ribosomal protein L31 [Oryza sativa (japonica
           cultivar-group)]
 dbj|BAF09849.1| Os02g0717800 [Oryza sativa (japonica cultivar-group)]
          Length = 123

 Score =  231 bits (590), Expect = 2e-59
 Identities = 115/123 (93%), Positives = 120/123 (97%)
 Frame = +3

Query: 75  MSEKKRAAGTRKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRID 254
           MSEKKR AGTRKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTD+RID
Sbjct: 1   MSEKKRGAGTRKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDIRID 60

Query: 255 VKLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEIPQEGLKGLGTKVVE 434
           VKLNK IW++GIRSVPRRVRVRI+RKRNDEEDAKEELYSLVTVAEIP EGLKGLGTKVVE
Sbjct: 61  VKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVE 120

Query: 435 DED 443
           DE+
Sbjct: 121 DEE 123


>ref|NP_001105280.1| hypothetical protein LOC542196 [Zea mays]
 gb|AAV28627.1| putative 60S ribosomal protein L31 [Zea mays]
          Length = 124

 Score =  226 bits (576), Expect = 6e-58
 Identities = 114/124 (91%), Positives = 119/124 (95%), Gaps = 1/124 (0%)
 Frame = +3

Query: 75  MSEKK-RAAGTRKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRI 251
           M+EKK R  G+RKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTD+RI
Sbjct: 1   MAEKKQRPGGSRKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDIRI 60

Query: 252 DVKLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEIPQEGLKGLGTKVV 431
           DVKLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEIP EGLKGLGTKVV
Sbjct: 61  DVKLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVV 120

Query: 432 EDED 443
           ++ D
Sbjct: 121 DETD 124


>ref|NP_001057508.1| Os06g0319700 [Oryza sativa (japonica cultivar-group)]
 dbj|BAD61612.1| putative 60S ribosomal protein L31 [Oryza sativa (japonica
           cultivar-group)]
 dbj|BAF19422.1| Os06g0319700 [Oryza sativa (japonica cultivar-group)]
 gb|EAZ36810.1| hypothetical protein OsJ_020293 [Oryza sativa (japonica
           cultivar-group)]
          Length = 124

 Score =  225 bits (574), Expect = 1e-57
 Identities = 112/124 (90%), Positives = 119/124 (95%), Gaps = 1/124 (0%)
 Frame = +3

Query: 75  MSEKK-RAAGTRKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRI 251
           M+EKK R  G RKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGT DVR+
Sbjct: 1   MAEKKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRV 60

Query: 252 DVKLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEIPQEGLKGLGTKVV 431
           DVKLNKHIWSSGIRSVPRRVRVRIAR+RNDEEDAKEELYSLVTVAE+PQEGLKGLGTK+V
Sbjct: 61  DVKLNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKLV 120

Query: 432 EDED 443
           ED++
Sbjct: 121 EDDE 124


>gb|EAZ00722.1| hypothetical protein OsI_021954 [Oryza sativa (indica
           cultivar-group)]
          Length = 124

 Score =  223 bits (568), Expect = 5e-57
 Identities = 111/124 (89%), Positives = 118/124 (95%), Gaps = 1/124 (0%)
 Frame = +3

Query: 75  MSEKK-RAAGTRKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTTDVRI 251
           M+EKK R  G RKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGT DVR+
Sbjct: 1   MAEKKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRV 60

Query: 252 DVKLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEIPQEGLKGLGTKVV 431
           DVKLNKHIWSSGIRSVPRRVRVRIAR+RNDEEDAKEELYSLVTVAE+P EGLKGLGTK+V
Sbjct: 61  DVKLNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKLV 120

Query: 432 EDED 443
           ED++
Sbjct: 121 EDDE 124