BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyst002a12
         (979 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA98929.1| DNA-directed RNA polymerase II 14.5 kDa polypepti...   245   4e-63
emb|CAN66735.1| hypothetical protein [Vitis vinifera] >gi|157353...   229   2e-58
ref|NP_001067017.1| Os12g0560400 [Oryza sativa (japonica cultiva...   223   2e-56
gb|ABD32320.1| DNA-directed RNA polymerase, subunit C11/M/9 [Med...   223   2e-56
ref|NP_188323.1| DNA-directed RNA polymerase II, putative [Arabi...   221   7e-56

>gb|ABA98929.1| DNA-directed RNA polymerase II 14.5 kDa polypeptide, putative,
           expressed [Oryza sativa (japonica cultivar-group)]
 gb|EAY83508.1| hypothetical protein OsI_037467 [Oryza sativa (indica
           cultivar-group)]
 gb|EAZ20865.1| hypothetical protein OsJ_035074 [Oryza sativa (japonica
           cultivar-group)]
          Length = 114

 Score =  245 bits (625), Expect = 4e-63
 Identities = 110/114 (96%), Positives = 114/114 (100%)
 Frame = +1

Query: 298 MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAENSCVYRNVVHHSAGEFTQVLQ 477
           MSTMKFCRECNNILYPKEDR+QKILLYACRNCDHQEVA+N+CVYRNVVHHSAGEFTQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNNCVYRNVVHHSAGEFTQVLQ 60

Query: 478 DVAGDPTLPRTKSVRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRE 639
           DVAGDPTLPRTK+VRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRE
Sbjct: 61  DVAGDPTLPRTKAVRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRE 114


>emb|CAN66735.1| hypothetical protein [Vitis vinifera]
 emb|CAO44896.1| unnamed protein product [Vitis vinifera]
          Length = 114

 Score =  229 bits (584), Expect = 2e-58
 Identities = 103/114 (90%), Positives = 108/114 (94%)
 Frame = +1

Query: 298 MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAENSCVYRNVVHHSAGEFTQVLQ 477
           MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAEN+CVYRN +HHS GE TQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAENNCVYRNEIHHSVGERTQVLQ 60

Query: 478 DVAGDPTLPRTKSVRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRE 639
           DVA DPTLPRTKSVRCA C HGEAVFFQATARGEEGMTLFFVCCNP+CG+RWR+
Sbjct: 61  DVAADPTLPRTKSVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD 114


>ref|NP_001067017.1| Os12g0560400 [Oryza sativa (japonica cultivar-group)]
 dbj|BAF30036.1| Os12g0560400 [Oryza sativa (japonica cultivar-group)]
          Length = 104

 Score =  223 bits (567), Expect = 2e-56
 Identities = 100/104 (96%), Positives = 104/104 (100%)
 Frame = +1

Query: 328 NNILYPKEDREQKILLYACRNCDHQEVAENSCVYRNVVHHSAGEFTQVLQDVAGDPTLPR 507
           NNILYPKEDR+QKILLYACRNCDHQEVA+N+CVYRNVVHHSAGEFTQVLQDVAGDPTLPR
Sbjct: 1   NNILYPKEDRDQKILLYACRNCDHQEVADNNCVYRNVVHHSAGEFTQVLQDVAGDPTLPR 60

Query: 508 TKSVRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRE 639
           TK+VRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRE
Sbjct: 61  TKAVRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRE 104


>gb|ABD32320.1| DNA-directed RNA polymerase, subunit C11/M/9 [Medicago truncatula]
          Length = 114

 Score =  223 bits (567), Expect = 2e-56
 Identities = 99/114 (86%), Positives = 104/114 (91%)
 Frame = +1

Query: 298 MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAENSCVYRNVVHHSAGEFTQVLQ 477
           MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQE A+N CVYRN +HHS  E TQVLQ
Sbjct: 1   MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQ 60

Query: 478 DVAGDPTLPRTKSVRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRE 639
           DVA DPTLPRTK+VRC  C HGEAVFFQATARGEEGMTLFFVCCNP+CGHRWR+
Sbjct: 61  DVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD 114


>ref|NP_188323.1| DNA-directed RNA polymerase II, putative [Arabidopsis thaliana]
 gb|AAS76204.1| At3g16980 [Arabidopsis thaliana]
 gb|AAS88753.1| At3g16980 [Arabidopsis thaliana]
          Length = 114

 Score =  221 bits (562), Expect = 7e-56
 Identities = 99/114 (86%), Positives = 105/114 (92%)
 Frame = +1

Query: 298 MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEVAENSCVYRNVVHHSAGEFTQVLQ 477
           MSTMKFCRECNNILYPKED+EQKILLYACRNCDHQEVA+NSCVYRN VHHS  E TQ+L 
Sbjct: 1   MSTMKFCRECNNILYPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILT 60

Query: 478 DVAGDPTLPRTKSVRCAVCGHGEAVFFQATARGEEGMTLFFVCCNPSCGHRWRE 639
           DVA DPTLPRTK+VRC+ C H EAVFFQATARGEEGMTLFFVCCNP+CGHRWRE
Sbjct: 61  DVASDPTLPRTKAVRCSKCQHREAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 114