BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphylf058f06
         (1213 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA95205.1| retrotransposon protein, putative, Ty1-copia subc...   225   3e-93
gb|AAK70633.1|AC091238_11 Putative gag-pol polyprotein [Oryza sa...   223   9e-92
gb|AAV24758.1| putative polyprotein [Oryza sativa (japonica cult...   210   5e-86
emb|CAN67912.1| hypothetical protein [Vitis vinifera]                 184   3e-72
ref|NP_001068246.1| Os11g0606000 [Oryza sativa (japonica cultiva...   142   3e-65

>gb|ABA95205.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           (japonica cultivar-group)]
          Length = 1407

 Score =  225 bits (573), Expect(3) = 3e-93
 Identities = 105/194 (54%), Positives = 143/194 (73%)
 Frame = +2

Query: 74  ASNVAATIDNIEQLTGSNFPAWKERISVVLGVLDLDYALKVTPPIPPTDGEENYDEKKKT 253
           AS ++  + NIEQL GSN+ +WKE++ + L +LD+DYAL   PP+ P    ENY+  K+ 
Sbjct: 11  ASQISGIMGNIEQLNGSNYASWKEKLEITLALLDIDYALHNDPPVEPRPENENYETLKRI 70

Query: 254 YDTNAEKWERSNRLSLMITKTSISVGIRGAIPDSENAKEYLASVEEKFRGSTKVYASTLI 433
           YD    KW+ SNR  LMI K+SI   IRG +PD++ A+EYLA +EE+F+GS+KVYA+TLI
Sbjct: 71  YDEVKAKWDISNRKCLMIIKSSIIDAIRGVVPDTQTAREYLAKIEEQFKGSSKVYATTLI 130

Query: 434 QRLLTTKYDGSGSIREHIMMMTDMAGMLKGMDMEISDGFLVHFIMTSLPSDYTAFKINYN 613
           +RL+  +YD +G++REHIM    MA  LK M+MEIS+GFLVHFIM+SLP ++++F INYN
Sbjct: 131 KRLVNERYDFTGNLREHIMKKCHMASKLKSMEMEISEGFLVHFIMSSLPQEFSSFTINYN 190

Query: 614 TQKDKWSISDLIAM 655
             K KW I +LIAM
Sbjct: 191 AMKIKWGIDELIAM 204



 Score =  108 bits (270), Expect(3) = 3e-93
 Identities = 51/95 (53%), Positives = 72/95 (75%)
 Frame = +1

Query: 928  RGFHTARTLRKGERSLRVADGKEAEVELVGSVSLVLDSGFILHLNNVVYVPSIRRNLISV 1107
            +GF   RTL++GER +RVA+G E EVE +G  +L L +GF L L++V+YVPS++RNL+SV
Sbjct: 336  QGFAMRRTLKRGERRIRVANGVETEVEAIGDFTLTLHTGFKLQLHDVLYVPSMKRNLVSV 395

Query: 1108 SLLDDDGFKCNFGNNKCIIAFNSNNVGLAFRQDKL 1212
            S LD+DG+ C FGNN+CII  ++  VGLA   ++L
Sbjct: 396  SRLDNDGYYCTFGNNRCIIMHDNKEVGLAVGWEQL 430



 Score = 56.6 bits (135), Expect(3) = 3e-93
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
 Frame = +3

Query: 654 CL*EEERIRTEKKDLVNQVGGPNKRK---FSGDFKSKKKLHYSPNSDKSGPKVHNTP--K 818
           C+ EEER++ E+ D  N      K+K   F  ++   K + +      S     N     
Sbjct: 205 CVQEEERLKAERVDHANLFKHSEKKKYKKFKKEYLKHKPIQFKEKGQSSSQSQQNKSGGN 264

Query: 819 PHVAPAGALKGDECHFCKQSGHF*KDYVSFLKWLAKKG 932
           P+    G  K D C+FC +SGH  KD + F++WL+KKG
Sbjct: 265 PYTEEKGKEK-DGCYFCGKSGHRQKDCIGFMRWLSKKG 301


>gb|AAK70633.1|AC091238_11 Putative gag-pol polyprotein [Oryza sativa (japonica
           cultivar-group)]
 gb|AAM47288.1|AC122146_7 Putative gag-pol polyprotein [Oryza sativa (japonica
           cultivar-group)]
 gb|AAP52462.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           (japonica cultivar-group)]
          Length = 1225

 Score =  223 bits (569), Expect(3) = 9e-92
 Identities = 106/194 (54%), Positives = 142/194 (73%)
 Frame = +2

Query: 74  ASNVAATIDNIEQLTGSNFPAWKERISVVLGVLDLDYALKVTPPIPPTDGEENYDEKKKT 253
           AS ++  + NIEQL GSN+ +WKE++ + L +LD+DYAL   PP+ P    ENY+  K+ 
Sbjct: 11  ASQISGIMGNIEQLNGSNYASWKEKLEITLAMLDIDYALHNDPPVEPRPENENYETLKRI 70

Query: 254 YDTNAEKWERSNRLSLMITKTSISVGIRGAIPDSENAKEYLASVEEKFRGSTKVYASTLI 433
           YD    KW+ SNR  LMI K+SI   IR A+PD++ A+EYLA +EE+F+GS+KVYA+TLI
Sbjct: 71  YDEVKAKWDISNRKCLMIIKSSIIDAIRVAVPDTQTAREYLAKIEEQFKGSSKVYATTLI 130

Query: 434 QRLLTTKYDGSGSIREHIMMMTDMAGMLKGMDMEISDGFLVHFIMTSLPSDYTAFKINYN 613
           +RL+  +YD SG++REHIM    MA  LK M+MEIS+GFLVHFIM+SLP +++ F INYN
Sbjct: 131 KRLVNERYDFSGNLREHIMKKCHMASKLKSMEMEISEGFLVHFIMSSLPQEFSPFTINYN 190

Query: 614 TQKDKWSISDLIAM 655
             K KW I +LIAM
Sbjct: 191 AMKIKWGIDELIAM 204



 Score =  108 bits (269), Expect(3) = 9e-92
 Identities = 51/95 (53%), Positives = 72/95 (75%)
 Frame = +1

Query: 928  RGFHTARTLRKGERSLRVADGKEAEVELVGSVSLVLDSGFILHLNNVVYVPSIRRNLISV 1107
            +GF   RTLR+GER +RVA+G E EVE +G  +L L +GF L L++V+YVPS++RNL+SV
Sbjct: 336  QGFAMRRTLRRGERRIRVANGVETEVEAIGDFTLTLHTGFKLQLHDVLYVPSMKRNLVSV 395

Query: 1108 SLLDDDGFKCNFGNNKCIIAFNSNNVGLAFRQDKL 1212
            S LD+ G+ C FGNN+CII  ++  VGLA  +++L
Sbjct: 396  SRLDNGGYYCTFGNNRCIIMHDNKEVGLAVGREQL 430



 Score = 53.5 bits (127), Expect(3) = 9e-92
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
 Frame = +3

Query: 654 CL*EEERIRTEKKDLVNQVGGPNKRK---FSGDFKSKKKLHYSPNSDKSGPKVHNTP--K 818
           C+ EEER++ E+ D  N      K+K   F  ++   K + +      S     N     
Sbjct: 205 CVQEEERLKAERVDHANLFKHSEKKKYKKFKKEYLKPKPIQFKEKGQSSSQSQQNKSGGN 264

Query: 819 PHVAPAGALKGDECHFCKQSGHF*KDYVSFLKWLAKKG 932
           P+       K D C+FC +SGH  KD + F++WL+KKG
Sbjct: 265 PYTEEKEKEK-DGCYFCGKSGHRQKDCIGFMRWLSKKG 301


>gb|AAV24758.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1206

 Score =  210 bits (535), Expect(3) = 5e-86
 Identities = 101/185 (54%), Positives = 136/185 (73%)
 Frame = +2

Query: 101 NIEQLTGSNFPAWKERISVVLGVLDLDYALKVTPPIPPTDGEENYDEKKKTYDTNAEKWE 280
           NIEQL GSN+ +WKE++ + L +LD+DYAL   P I P    ENY+  KK YD    KW+
Sbjct: 3   NIEQLNGSNYASWKEKLEITLALLDIDYALHNNPLIEPRPENENYETLKKEYDEVKAKWD 62

Query: 281 RSNRLSLMITKTSISVGIRGAIPDSENAKEYLASVEEKFRGSTKVYASTLIQRLLTTKYD 460
            SNR  LMI K+SI   IRGA+P+++ A+EYLA VEE+F+GS+KVYA+TLI+RL+  KYD
Sbjct: 63  ISNRKFLMIIKSSIIDAIRGAVPETQTAREYLAKVEEQFKGSSKVYATTLIKRLVNEKYD 122

Query: 461 GSGSIREHIMMMTDMAGMLKGMDMEISDGFLVHFIMTSLPSDYTAFKINYNTQKDKWSIS 640
            +G++REH+M    +A  LK M+M+IS+G LVHFIM+SLP +++ F I+YN  K KW I 
Sbjct: 123 FTGNLREHVMKKCHVAFKLKSMEMKISEGLLVHFIMSSLPQEFSPFTIDYNAMKIKWGID 182

Query: 641 DLIAM 655
           +LIAM
Sbjct: 183 ELIAM 187



 Score =  103 bits (258), Expect(3) = 5e-86
 Identities = 50/95 (52%), Positives = 70/95 (73%)
 Frame = +1

Query: 928  RGFHTARTLRKGERSLRVADGKEAEVELVGSVSLVLDSGFILHLNNVVYVPSIRRNLISV 1107
            +GF   RTLR+GER ++VA+G E EV+ +G   L L +GF   L++V+YVPS++RNLISV
Sbjct: 300  QGFTMRRTLRRGERRIKVANGVETEVKAIGDFILTLHTGFKFQLHDVLYVPSMKRNLISV 359

Query: 1108 SLLDDDGFKCNFGNNKCIIAFNSNNVGLAFRQDKL 1212
            S LD+ G+ C FGNN+CII  ++  VGLA  Q++L
Sbjct: 360  SRLDNGGYYCTFGNNRCIIMHDNKEVGLADGQEQL 394



 Score = 51.6 bits (122), Expect(3) = 5e-86
 Identities = 33/93 (35%), Positives = 48/93 (51%)
 Frame = +3

Query: 654 CL*EEERIRTEKKDLVNQVGGPNKRKFSGDFKSKKKLHYSPNSDKSGPKVHNTPKPHVAP 833
           C+ EEER++ E+ D  N      K+++    K KK+           PK  N   P+   
Sbjct: 188 CVQEEERLKAERVDHANLFKHSEKKRYK---KFKKEF--------LKPKPRN---PYTEE 233

Query: 834 AGALKGDECHFCKQSGHF*KDYVSFLKWLAKKG 932
            G  K D C+FC +SGH  KD + F++WL+KKG
Sbjct: 234 KGKEK-DGCYFCGKSGHRQKDCIGFMRWLSKKG 265


>emb|CAN67912.1| hypothetical protein [Vitis vinifera]
          Length = 1012

 Score =  184 bits (466), Expect(3) = 3e-72
 Identities = 98/196 (50%), Positives = 129/196 (65%)
 Frame = +2

Query: 68  INASNVAATIDNIEQLTGSNFPAWKERISVVLGVLDLDYALKVTPPIPPTDGEENYDEKK 247
           +N + +   +  IEQL+ +NF  WKE+I +VLG +DLDYAL+   P  PT   E+ +E+K
Sbjct: 1   MNPTAITGYLSGIEQLSEANFKKWKEQIGLVLGCMDLDYALREPTPTKPTS--ESTNEQK 58

Query: 248 KTYDTNAEKWERSNRLSLMITKTSISVGIRGAIPDSENAKEYLASVEEKFRGSTKVYAST 427
             Y    EKW+ SNR+SLMI K SI+  IRG I DS+NA  Y+ S+EE+F G++K   ST
Sbjct: 59  ALY----EKWKCSNRVSLMIMKGSITAAIRGTISDSDNAMSYIKSIEEQFLGTSKSLEST 114

Query: 428 LIQRLLTTKYDGSGSIREHIMMMTDMAGMLKGMDMEISDGFLVHFIMTSLPSDYTAFKIN 607
           L+ +++T KYDG  S+REHIM M+                FLVHFIMTSLPS +  FKIN
Sbjct: 115 LMIKMITMKYDGHSSVREHIMKMS----------------FLVHFIMTSLPSQFGPFKIN 158

Query: 608 YNTQKDKWSISDLIAM 655
           YNTQKDKW +S+LI M
Sbjct: 159 YNTQKDKWKMSELIVM 174



 Score = 82.8 bits (203), Expect(3) = 3e-72
 Identities = 40/87 (45%), Positives = 59/87 (67%)
 Frame = +1

Query: 928  RGFHTARTLRKGERSLRVADGKEAEVELVGSVSLVLDSGFILHLNNVVYVPSIRRNLISV 1107
            +G+ T++ L KGER++ + +G E E+E +GS+ L+LD GFI+ L + +YVP   RNLISV
Sbjct: 274  QGYLTSKKLSKGERTITLGNGIEVEIEAIGSLHLILDIGFIMDLVDTIYVPVFTRNLISV 333

Query: 1108 SLLDDDGFKCNFGNNKCIIAFNSNNVG 1188
              LD  G++  FGNN   + +NS  VG
Sbjct: 334  PRLDSYGYELKFGNNGVSLFYNSCLVG 360



 Score = 53.1 bits (126), Expect(3) = 3e-72
 Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
 Frame = +3

Query: 654 CL*EEERIRTEKKDLVNQVGGPNKRKFSGDFKSKKKL--HYSPNSDKSGPKVHNTPKPHV 827
           C+ EEER++ EK D+ +   GPNK+ F      KKK     S N  K   K+        
Sbjct: 175 CVQEEERLKVEKPDMAHLTMGPNKKSFKKGKGKKKKQGNDVSHNGQKEENKI-------- 226

Query: 828 APAGALKGDECHFCKQSGHF*KDYVSFLKWLAKK 929
                    +CHFC + GH  +D   F  WL KK
Sbjct: 227 ---------QCHFCHKKGHKIRDCSGFKAWLEKK 251


>ref|NP_001068246.1| Os11g0606000 [Oryza sativa (japonica cultivar-group)]
 gb|ABA94675.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           (japonica cultivar-group)]
 dbj|BAF28609.1| Os11g0606000 [Oryza sativa (japonica cultivar-group)]
          Length = 815

 Score =  142 bits (358), Expect(3) = 3e-65
 Identities = 75/174 (43%), Positives = 107/174 (61%)
 Frame = +2

Query: 134 AWKERISVVLGVLDLDYALKVTPPIPPTDGEENYDEKKKTYDTNAEKWERSNRLSLMITK 313
           +W+E+I + L + ++D AL    P  P   +         YDT+  KWE SNR  LM+ K
Sbjct: 11  SWREKIEIALALSNIDLALTEPCPTAPVAPK---------YDTDHAKWESSNRKCLMVIK 61

Query: 314 TSISVGIRGAIPDSENAKEYLASVEEKFRGSTKVYASTLIQRLLTTKYDGSGSIREHIMM 493
           +SI   +RGAIP    A EYL  VE +F  S+K YAS+LI+ L+T KY G G +RE+I+ 
Sbjct: 62  SSIVEAVRGAIPVCTTATEYLQRVENQFTISSKAYASSLIKSLVTMKYHG-GDVREYILK 120

Query: 494 MTDMAGMLKGMDMEISDGFLVHFIMTSLPSDYTAFKINYNTQKDKWSISDLIAM 655
           M+ +   LK +D+ + D FLVH I  SLPS++ +F +NYN+  + W+I  LIAM
Sbjct: 121 MSGITSKLKKIDLVLPDDFLVHLIFASLPSEFESFAVNYNSLPENWNIEKLIAM 174



 Score =  106 bits (265), Expect(3) = 3e-65
 Identities = 52/95 (54%), Positives = 69/95 (72%)
 Frame = +1

Query: 928  RGFHTARTLRKGERSLRVADGKEAEVELVGSVSLVLDSGFILHLNNVVYVPSIRRNLISV 1107
            +GFHT R L +GER +RVA+G EAEVE +G   L L++GF L+L+NV+YVPS+ RNL+SV
Sbjct: 263  QGFHTRRMLARGERCIRVANGVEAEVEAIGEYPLKLNNGFTLYLHNVLYVPSLSRNLVSV 322

Query: 1108 SLLDDDGFKCNFGNNKCIIAFNSNNVGLAFRQDKL 1212
            S L DDG+ C F  + C I F +  VGLA R+ +L
Sbjct: 323  SCLADDGYNCYFEPDLCSIIFKNKCVGLAIREGQL 357



 Score = 47.4 bits (111), Expect(3) = 3e-65
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
 Frame = +3

Query: 654 CL*EEERIRTEKKDLVNQVGGPNKRKFSGDFKSKKKLHYSPNSDKSGPKVHN-TPKPHVA 830
           C+ EE+R +T + D  N V            K+KK+ ++S N   + PK     P+    
Sbjct: 175 CVQEEDRPKT-RGDSANYV------------KNKKRNNHSQNV--ASPKARGKAPQVDPN 219

Query: 831 PAGALKGDECHFCKQSGHF*KDYVSFLKWLAKKG 932
           P   ++ D C +CKQ GHF KD   FLK L KKG
Sbjct: 220 PRQEVERDACRWCKQKGHFQKDCPEFLKHLLKKG 253