BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphylf056e01
         (801 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001067017.1| Os12g0560400 [Oryza sativa (japonica cultiva...   190   1e-46
gb|ABA98929.1| DNA-directed RNA polymerase II 14.5 kDa polypepti...   190   1e-46
emb|CAN66735.1| hypothetical protein [Vitis vinifera] >gi|157353...   176   1e-42
gb|ABD32320.1| DNA-directed RNA polymerase, subunit C11/M/9 [Med...   170   8e-41
ref|NP_188323.1| DNA-directed RNA polymerase II, putative [Arabi...   170   1e-40

>ref|NP_001067017.1| Os12g0560400 [Oryza sativa (japonica cultivar-group)]
 dbj|BAF30036.1| Os12g0560400 [Oryza sativa (japonica cultivar-group)]
          Length = 104

 Score =  190 bits (482), Expect = 1e-46
 Identities = 89/128 (69%), Positives = 95/128 (74%)
 Frame = +3

Query: 177 YPKEGREQKVLLYACRNCDHQEVTDNNCVYRNVVHHTAGEFTQVLQDVAGDPTLPRTKSV 356
           YPKE R+QK+LLYACRNCDHQEV DNNCVYRNVVHH+AGEFTQVLQDVAGDPTLPRTK+V
Sbjct: 5   YPKEDRDQKILLYACRNCDHQEVADNNCVYRNVVHHSAGEFTQVLQDVAGDPTLPRTKAV 64

Query: 357 RCSACSHGETVFFQIHSEYFSSFRVQS*QLLKV*N*QSLFLQATARGEEGMTLFFLCCNP 536
           RC+ C HGE VFF                            QATARGEEGMTLFF+CCNP
Sbjct: 65  RCAVCGHGEAVFF----------------------------QATARGEEGMTLFFVCCNP 96

Query: 537 SCGHRWRE 560
           SCGHRWRE
Sbjct: 97  SCGHRWRE 104


>gb|ABA98929.1| DNA-directed RNA polymerase II 14.5 kDa polypeptide, putative,
           expressed [Oryza sativa (japonica cultivar-group)]
 gb|EAY83508.1| hypothetical protein OsI_037467 [Oryza sativa (indica
           cultivar-group)]
 gb|EAZ20865.1| hypothetical protein OsJ_035074 [Oryza sativa (japonica
           cultivar-group)]
          Length = 114

 Score =  190 bits (482), Expect = 1e-46
 Identities = 89/128 (69%), Positives = 95/128 (74%)
 Frame = +3

Query: 177 YPKEGREQKVLLYACRNCDHQEVTDNNCVYRNVVHHTAGEFTQVLQDVAGDPTLPRTKSV 356
           YPKE R+QK+LLYACRNCDHQEV DNNCVYRNVVHH+AGEFTQVLQDVAGDPTLPRTK+V
Sbjct: 15  YPKEDRDQKILLYACRNCDHQEVADNNCVYRNVVHHSAGEFTQVLQDVAGDPTLPRTKAV 74

Query: 357 RCSACSHGETVFFQIHSEYFSSFRVQS*QLLKV*N*QSLFLQATARGEEGMTLFFLCCNP 536
           RC+ C HGE VFF                            QATARGEEGMTLFF+CCNP
Sbjct: 75  RCAVCGHGEAVFF----------------------------QATARGEEGMTLFFVCCNP 106

Query: 537 SCGHRWRE 560
           SCGHRWRE
Sbjct: 107 SCGHRWRE 114


>emb|CAN66735.1| hypothetical protein [Vitis vinifera]
 emb|CAO44896.1| unnamed protein product [Vitis vinifera]
          Length = 114

 Score =  176 bits (446), Expect = 1e-42
 Identities = 82/128 (64%), Positives = 92/128 (71%)
 Frame = +3

Query: 177 YPKEGREQKVLLYACRNCDHQEVTDNNCVYRNVVHHTAGEFTQVLQDVAGDPTLPRTKSV 356
           YPKE REQK+LLYACRNCDHQEV +NNCVYRN +HH+ GE TQVLQDVA DPTLPRTKSV
Sbjct: 15  YPKEDREQKILLYACRNCDHQEVAENNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKSV 74

Query: 357 RCSACSHGETVFFQIHSEYFSSFRVQS*QLLKV*N*QSLFLQATARGEEGMTLFFLCCNP 536
           RC+ C+HGE VFF                            QATARGEEGMTLFF+CCNP
Sbjct: 75  RCAQCNHGEAVFF----------------------------QATARGEEGMTLFFVCCNP 106

Query: 537 SCGHRWRE 560
           +CG+RWR+
Sbjct: 107 NCGYRWRD 114


>gb|ABD32320.1| DNA-directed RNA polymerase, subunit C11/M/9 [Medicago truncatula]
          Length = 114

 Score =  170 bits (431), Expect = 8e-41
 Identities = 80/128 (62%), Positives = 88/128 (68%)
 Frame = +3

Query: 177 YPKEGREQKVLLYACRNCDHQEVTDNNCVYRNVVHHTAGEFTQVLQDVAGDPTLPRTKSV 356
           YPKE REQK+LLYACRNCDHQE  DN CVYRN +HH+  E TQVLQDVA DPTLPRTK+V
Sbjct: 15  YPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPRTKAV 74

Query: 357 RCSACSHGETVFFQIHSEYFSSFRVQS*QLLKV*N*QSLFLQATARGEEGMTLFFLCCNP 536
           RC  C+HGE VFF                            QATARGEEGMTLFF+CCNP
Sbjct: 75  RCVQCNHGEAVFF----------------------------QATARGEEGMTLFFVCCNP 106

Query: 537 SCGHRWRE 560
           +CGHRWR+
Sbjct: 107 NCGHRWRD 114


>ref|NP_188323.1| DNA-directed RNA polymerase II, putative [Arabidopsis thaliana]
 gb|AAS76204.1| At3g16980 [Arabidopsis thaliana]
 gb|AAS88753.1| At3g16980 [Arabidopsis thaliana]
          Length = 114

 Score =  170 bits (430), Expect = 1e-40
 Identities = 80/128 (62%), Positives = 88/128 (68%)
 Frame = +3

Query: 177 YPKEGREQKVLLYACRNCDHQEVTDNNCVYRNVVHHTAGEFTQVLQDVAGDPTLPRTKSV 356
           YPKE +EQK+LLYACRNCDHQEV DN+CVYRN VHH+  E TQ+L DVA DPTLPRTK+V
Sbjct: 15  YPKEDKEQKILLYACRNCDHQEVADNSCVYRNEVHHSVSERTQILTDVASDPTLPRTKAV 74

Query: 357 RCSACSHGETVFFQIHSEYFSSFRVQS*QLLKV*N*QSLFLQATARGEEGMTLFFLCCNP 536
           RCS C H E VFF                            QATARGEEGMTLFF+CCNP
Sbjct: 75  RCSKCQHREAVFF----------------------------QATARGEEGMTLFFVCCNP 106

Query: 537 SCGHRWRE 560
           +CGHRWRE
Sbjct: 107 NCGHRWRE 114