BLASTX 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf048l23 (1575 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 5,815,196 sequences; 2,006,227,497 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAZ00649.1| hypothetical protein OsI_021881 [Oryza sativa (in... 708 0.0 dbj|BAD62387.1| putative 41 kD chloroplast nucleoid DNA binding ... 708 0.0 gb|EAZ36752.1| hypothetical protein OsJ_020235 [Oryza sativa (ja... 672 0.0 ref|NP_001047956.1| Os02g0720900 [Oryza sativa (japonica cultiva... 671 0.0 dbj|BAD12880.1| putative chloroplast nucleoid DNA-binding protei... 513 e-143 >gb|EAZ00649.1| hypothetical protein OsI_021881 [Oryza sativa (indica cultivar-group)] Length = 469 Score = 708 bits (1827), Expect = 0.0 Identities = 364/455 (80%), Positives = 388/455 (85%), Gaps = 8/455 (1%) Frame = +2 Query: 80 FAVATPIREITNACNSQVNDFQHLNSSGLHLTLHHPQSPCSPAPLPSDLPFSAVVTHDEA 259 F +ATPIR+IT+ C SQ++DFQHLNSSGLHLTLHHPQSPCSPAPLPSDLPFSAVVTHD+A Sbjct: 15 FTIATPIRDITDVCASQISDFQHLNSSGLHLTLHHPQSPCSPAPLPSDLPFSAVVTHDDA 74 Query: 260 RIAHLASRLAKTPSGRPTS---LHGHRKKAAGHLADSLASS--VPLTPGTSVGVGNYVTR 424 RIAHLASRLA P+S LHGHRKK AG + S ASS VPLTPG SV VGNYVTR Sbjct: 75 RIAHLASRLANNHPTSPSSSSLLHGHRKKKAGGVGGSQASSSSVPLTPGASVAVGNYVTR 134 Query: 425 LGLGTPATSYVMVVDTGSSLTWLQCSPCVVSCHRQAGPFYDPHASNTYASVPCSASQCGD 604 LGLGTPATSYVMVVDTGSSLTWLQCSPC VSCHRQAGP +DP AS TYA+V CS+S+CG+ Sbjct: 135 LGLGTPATSYVMVVDTGSSLTWLQCSPCSVSCHRQAGPVFDPRASGTYAAVQCSSSECGE 194 Query: 605 LQDATLNPSSCSVSNVCIYQASYGDSSFSVGYLSKDTVSFGSSSFPNFYYGCGQDNEGLF 784 LQ ATLNPS+CSVSNVCIYQASYGDSS+SVGYLSKDTVSFGS SFP FYYGCGQDNEGLF Sbjct: 195 LQAATLNPSACSVSNVCIYQASYGDSSYSVGYLSKDTVSFGSGSFPGFYYGCGQDNEGLF 254 Query: 785 GRSAGLIGLARNKLSLLYQLAPSLGYSFSYCLPT-SASAGYLSIGS-NPGQYSYTPMASS 958 GRSAGLIGLA+NKLSLLYQLAPSLGY+FSYCLPT SA+AGYLSIGS NPGQYSYTPMASS Sbjct: 255 GRSAGLIGLAKNKLSLLYQLAPSLGYAFSYCLPTSSAAAGYLSIGSYNPGQYSYTPMASS 314 Query: 959 SLDGSLYFVNLAGMSVGGSPLAVSPSEYGSLPTIIDSGTVITRLPTR-XXXXXXXXXXXX 1135 SLD SLYFV L+G+SV G+PLAV PSEY SLPTIIDSGTVITRLP Sbjct: 315 SLDASLYFVTLSGISVAGAPLAVPPSEYRSLPTIIDSGTVITRLPPNVYTALSRAVAAAI 374 Query: 1136 XXXXXXXXXXSILDTCFQGRASQLRVPAVDMAFAGGATLKLAPRNVLIDVDDSTTCLAFA 1315 SILDTCF+G A+ LRVP VDMAFAGGATL L+P NVLIDVDDSTTCLAFA Sbjct: 375 AGAAPRAPTYSILDTCFRGSAAGLRVPRVDMAFAGGATLALSPGNVLIDVDDSTTCLAFA 434 Query: 1316 PTGSTAIIGNTQQQTFSVVYDVAQSRIGFAAGGCS 1420 PTG TAIIGNTQQQTFSVVYDVAQSRIGFAAGGCS Sbjct: 435 PTGGTAIIGNTQQQTFSVVYDVAQSRIGFAAGGCS 469 >dbj|BAD62387.1| putative 41 kD chloroplast nucleoid DNA binding protein [Oryza sativa (japonica cultivar-group)] Length = 469 Score = 708 bits (1827), Expect = 0.0 Identities = 364/455 (80%), Positives = 388/455 (85%), Gaps = 8/455 (1%) Frame = +2 Query: 80 FAVATPIREITNACNSQVNDFQHLNSSGLHLTLHHPQSPCSPAPLPSDLPFSAVVTHDEA 259 F +ATPIR+IT+ C SQ++DFQHLNSSGLHLTLHHPQSPCSPAPLPSDLPFSAVVTHD+A Sbjct: 15 FTIATPIRDITDVCASQISDFQHLNSSGLHLTLHHPQSPCSPAPLPSDLPFSAVVTHDDA 74 Query: 260 RIAHLASRLAKTPSGRPTS---LHGHRKKAAGHLADSLASS--VPLTPGTSVGVGNYVTR 424 RIAHLASRLA P+S LHGHRKK AG + S ASS VPLTPG SV VGNYVTR Sbjct: 75 RIAHLASRLANNHPTSPSSSSLLHGHRKKKAGGVGGSQASSSSVPLTPGASVAVGNYVTR 134 Query: 425 LGLGTPATSYVMVVDTGSSLTWLQCSPCVVSCHRQAGPFYDPHASNTYASVPCSASQCGD 604 LGLGTPATSYVMVVDTGSSLTWLQCSPC VSCHRQAGP +DP AS TYA+V CS+S+CG+ Sbjct: 135 LGLGTPATSYVMVVDTGSSLTWLQCSPCSVSCHRQAGPVFDPRASGTYAAVQCSSSECGE 194 Query: 605 LQDATLNPSSCSVSNVCIYQASYGDSSFSVGYLSKDTVSFGSSSFPNFYYGCGQDNEGLF 784 LQ ATLNPS+CSVSNVCIYQASYGDSS+SVGYLSKDTVSFGS SFP FYYGCGQDNEGLF Sbjct: 195 LQAATLNPSACSVSNVCIYQASYGDSSYSVGYLSKDTVSFGSGSFPGFYYGCGQDNEGLF 254 Query: 785 GRSAGLIGLARNKLSLLYQLAPSLGYSFSYCLPT-SASAGYLSIGS-NPGQYSYTPMASS 958 GRSAGLIGLA+NKLSLLYQLAPSLGY+FSYCLPT SA+AGYLSIGS NPGQYSYTPMASS Sbjct: 255 GRSAGLIGLAKNKLSLLYQLAPSLGYAFSYCLPTSSAAAGYLSIGSYNPGQYSYTPMASS 314 Query: 959 SLDGSLYFVNLAGMSVGGSPLAVSPSEYGSLPTIIDSGTVITRLPTR-XXXXXXXXXXXX 1135 SLD SLYFV L+G+SV G+PLAV PSEY SLPTIIDSGTVITRLP Sbjct: 315 SLDASLYFVTLSGISVAGAPLAVPPSEYRSLPTIIDSGTVITRLPPNVYTALSRAVAAAM 374 Query: 1136 XXXXXXXXXXSILDTCFQGRASQLRVPAVDMAFAGGATLKLAPRNVLIDVDDSTTCLAFA 1315 SILDTCF+G A+ LRVP VDMAFAGGATL L+P NVLIDVDDSTTCLAFA Sbjct: 375 ASAAPRAPTYSILDTCFRGSAAGLRVPRVDMAFAGGATLALSPGNVLIDVDDSTTCLAFA 434 Query: 1316 PTGSTAIIGNTQQQTFSVVYDVAQSRIGFAAGGCS 1420 PTG TAIIGNTQQQTFSVVYDVAQSRIGFAAGGCS Sbjct: 435 PTGGTAIIGNTQQQTFSVVYDVAQSRIGFAAGGCS 469 >gb|EAZ36752.1| hypothetical protein OsJ_020235 [Oryza sativa (japonica cultivar-group)] Length = 434 Score = 672 bits (1733), Expect = 0.0 Identities = 349/454 (76%), Positives = 374/454 (82%), Gaps = 7/454 (1%) Frame = +2 Query: 80 FAVATPIREITNACNSQVNDFQHLNSSGLHLTLHHPQSPCSPAPLPSDLPFSAVVTHDEA 259 F +ATPIR+IT+ C SQ++DFQHLNSSGLHLTLHHPQSPCSPAPLPSDLPFSAVVTHD+A Sbjct: 15 FTIATPIRDITDVCASQISDFQHLNSSGLHLTLHHPQSPCSPAPLPSDLPFSAVVTHDDA 74 Query: 260 RIAHLASRLAKTPSGRPTS---LHGHRKKAAGHLADSLASS--VPLTPGTSVGVGNYVTR 424 RIAHLASRLA P+S LHGHRKK AG + S ASS VPLTPG SV VGNYVTR Sbjct: 75 RIAHLASRLANNHPTSPSSSSLLHGHRKKKAGGVGGSQASSSSVPLTPGASVAVGNYVTR 134 Query: 425 LGLGTPATSYVMVVDTGSSLTWLQCSPCVVSCHRQAGPFYDPHASNTYASVPCSASQCGD 604 LGLGTPATSYVMVVDTGSSLTWLQCSPC VSCHRQAGP +DP AS TYA+V CS+S+CG+ Sbjct: 135 LGLGTPATSYVMVVDTGSSLTWLQCSPCSVSCHRQAGPVFDPRASGTYAAVQCSSSECGE 194 Query: 605 LQDATLNPSSCSVSNVCIYQASYGDSSFSVGYLSKDTVSFGSSSFPNFYYGCGQDNEGLF 784 LQ ATLNPS+CSVSNVCIYQASYGDSS+SVGYLSKDTVSFGS SFP FYYGCGQDNEGLF Sbjct: 195 LQAATLNPSACSVSNVCIYQASYGDSSYSVGYLSKDTVSFGSGSFPGFYYGCGQDNEGLF 254 Query: 785 GRSAGLIGLARNKLSLLYQLAPSLGYSFSYCLPTS-ASAGYLSIGS-NPGQYSYTPMASS 958 GRSAGLIGLA+NKLSLLYQLAPSLGY+FSYCLPTS A+AGYLSIGS NPGQYSYTPMASS Sbjct: 255 GRSAGLIGLAKNKLSLLYQLAPSLGYAFSYCLPTSSAAAGYLSIGSYNPGQYSYTPMASS 314 Query: 959 SLDGSLYFVNLAGMSVGGSPLAVSPSEYGSLPTIIDSGTVITRLPTRXXXXXXXXXXXXX 1138 SLD SLYFV L+G+SV G+PLAV PS+ R PT Sbjct: 315 SLDASLYFVTLSGISVAGAPLAVPPSD------------AAPRAPT-------------- 348 Query: 1139 XXXXXXXXXSILDTCFQGRASQLRVPAVDMAFAGGATLKLAPRNVLIDVDDSTTCLAFAP 1318 SILDTCF+G A+ LRVP VDMAFAGGATL L+P NVLIDVDDSTTCLAFAP Sbjct: 349 --------YSILDTCFRGSAAGLRVPRVDMAFAGGATLALSPGNVLIDVDDSTTCLAFAP 400 Query: 1319 TGSTAIIGNTQQQTFSVVYDVAQSRIGFAAGGCS 1420 TG TAIIGNTQQQTFSVVYDVAQSRIGFAAGGCS Sbjct: 401 TGGTAIIGNTQQQTFSVVYDVAQSRIGFAAGGCS 434 >ref|NP_001047956.1| Os02g0720900 [Oryza sativa (japonica cultivar-group)] dbj|BAD12879.1| putative chloroplast nucleoid DNA-binding protein cnd41 [Oryza sativa (japonica cultivar-group)] dbj|BAD12999.1| putative chloroplast nucleoid DNA-binding protein cnd41 [Oryza sativa (japonica cultivar-group)] dbj|BAF09870.1| Os02g0720900 [Oryza sativa (japonica cultivar-group)] gb|EAY87325.1| hypothetical protein OsI_008558 [Oryza sativa (indica cultivar-group)] Length = 458 Score = 671 bits (1730), Expect = 0.0 Identities = 336/448 (75%), Positives = 379/448 (84%), Gaps = 1/448 (0%) Frame = +2 Query: 80 FAVATPIREITNACNSQVNDFQHLNSSGLHLTLHHPQSPCSPAPLPSDLPFSAVVTHDEA 259 FAVATPIR+IT+ C+SQ+ DFQ+LNS+GLHL LHHP+SPCSPAP+P+DLPF+AV+THD+A Sbjct: 15 FAVATPIRDITDVCSSQIKDFQYLNSTGLHLELHHPRSPCSPAPVPADLPFTAVLTHDDA 74 Query: 260 RIAHLASRLAKTPSGRPTSLHGHRKKAAGHLADSLASSVPLTPGTSVGVGNYVTRLGLGT 439 RI+ LA+RLAKTPS R TSL A LA SLAS VPL+PG SVGVGNYVTR+GLGT Sbjct: 75 RISSLAARLAKTPSARATSLDAD---ADAGLAGSLAS-VPLSPGASVGVGNYVTRMGLGT 130 Query: 440 PATSYVMVVDTGSSLTWLQCSPCVVSCHRQAGPFYDPHASNTYASVPCSASQCGDLQDAT 619 PAT YVMVVDTGSSLTWLQCSPC+VSCHRQ+GP ++P +S+TYASV CSA QC DL AT Sbjct: 131 PATQYVMVVDTGSSLTWLQCSPCLVSCHRQSGPVFNPKSSSTYASVGCSAQQCSDLPSAT 190 Query: 620 LNPSSCSVSNVCIYQASYGDSSFSVGYLSKDTVSFGSSSFPNFYYGCGQDNEGLFGRSAG 799 LNPS+CS SNVCIYQASYGDSSFSVGYLSKDTVSFGS+S PNFYYGCGQDNEGLFGRSAG Sbjct: 191 LNPSACSSSNVCIYQASYGDSSFSVGYLSKDTVSFGSTSLPNFYYGCGQDNEGLFGRSAG 250 Query: 800 LIGLARNKLSLLYQLAPSLGYSFSYCLPTSASAGYLSIGS-NPGQYSYTPMASSSLDGSL 976 LIGLARNKLSLLYQLAPSLGYSF+YCLP+S+S+GYLS+GS NPGQYSYTPM SSSLD SL Sbjct: 251 LIGLARNKLSLLYQLAPSLGYSFTYCLPSSSSSGYLSLGSYNPGQYSYTPMVSSSLDDSL 310 Query: 977 YFVNLAGMSVGGSPLAVSPSEYGSLPTIIDSGTVITRLPTRXXXXXXXXXXXXXXXXXXX 1156 YF+ L+GM+V G+PL+VS S Y SLPTIIDSGTVITRLPT Sbjct: 311 YFIKLSGMTVAGNPLSVSSSAYSSLPTIIDSGTVITRLPTSVYSALSKAVAAAMKGTSRA 370 Query: 1157 XXXSILDTCFQGRASQLRVPAVDMAFAGGATLKLAPRNVLIDVDDSTTCLAFAPTGSTAI 1336 SILDTCF+G+AS++ PAV M+FAGGA LKL+ +N+L+DVDDSTTCLAFAP S AI Sbjct: 371 SAYSILDTCFKGQASRVSAPAVTMSFAGGAALKLSAQNLLVDVDDSTTCLAFAPARSAAI 430 Query: 1337 IGNTQQQTFSVVYDVAQSRIGFAAGGCS 1420 IGNTQQQTFSVVYDV SRIGFAAGGCS Sbjct: 431 IGNTQQQTFSVVYDVKSSRIGFAAGGCS 458 >dbj|BAD12880.1| putative chloroplast nucleoid DNA-binding protein cnd41 [Oryza sativa (japonica cultivar-group)] dbj|BAD13000.1| putative chloroplast nucleoid DNA-binding protein cnd41 [Oryza sativa (japonica cultivar-group)] Length = 333 Score = 513 bits (1321), Expect = e-143 Identities = 254/333 (76%), Positives = 282/333 (84%), Gaps = 1/333 (0%) Frame = +2 Query: 425 LGLGTPATSYVMVVDTGSSLTWLQCSPCVVSCHRQAGPFYDPHASNTYASVPCSASQCGD 604 +GLGTPAT YVMVVDTGSSLTWLQCSPC+VSCHRQ+GP ++P +S+TYASV CSA QC D Sbjct: 1 MGLGTPATQYVMVVDTGSSLTWLQCSPCLVSCHRQSGPVFNPKSSSTYASVGCSAQQCSD 60 Query: 605 LQDATLNPSSCSVSNVCIYQASYGDSSFSVGYLSKDTVSFGSSSFPNFYYGCGQDNEGLF 784 L ATLNPS+CS SNVCIYQASYGDSSFSVGYLSKDTVSFGS+S PNFYYGCGQDNEGLF Sbjct: 61 LPSATLNPSACSSSNVCIYQASYGDSSFSVGYLSKDTVSFGSTSLPNFYYGCGQDNEGLF 120 Query: 785 GRSAGLIGLARNKLSLLYQLAPSLGYSFSYCLPTSASAGYLSIGS-NPGQYSYTPMASSS 961 GRSAGLIGLARNKLSLLYQLAPSLGYSF+YCLP+S+S+GYLS+GS NPGQYSYTPM SSS Sbjct: 121 GRSAGLIGLARNKLSLLYQLAPSLGYSFTYCLPSSSSSGYLSLGSYNPGQYSYTPMVSSS 180 Query: 962 LDGSLYFVNLAGMSVGGSPLAVSPSEYGSLPTIIDSGTVITRLPTRXXXXXXXXXXXXXX 1141 LD SLYF+ L+GM+V G+PL+VS S Y SLPTIIDSGTVITRLPT Sbjct: 181 LDDSLYFIKLSGMTVAGNPLSVSSSAYSSLPTIIDSGTVITRLPTSVYSALSKAVAAAMK 240 Query: 1142 XXXXXXXXSILDTCFQGRASQLRVPAVDMAFAGGATLKLAPRNVLIDVDDSTTCLAFAPT 1321 SILDTCF+G+AS++ PAV M+FAGGA LKL+ +N+L+DVDDSTTCLAFAP Sbjct: 241 GTSRASAYSILDTCFKGQASRVSAPAVTMSFAGGAALKLSAQNLLVDVDDSTTCLAFAPA 300 Query: 1322 GSTAIIGNTQQQTFSVVYDVAQSRIGFAAGGCS 1420 S AIIGNTQQQTFSVVYDV SRIGFAAGGCS Sbjct: 301 RSAAIIGNTQQQTFSVVYDVKSSRIGFAAGGCS 333