BLASTX 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphylf041p06 (1710 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 5,815,196 sequences; 2,006,227,497 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_001061407.1| Os08g0267300 [Oryza sativa (japonica cultiva... 772 0.0 gb|EAZ06293.1| hypothetical protein OsI_027525 [Oryza sativa (in... 769 0.0 gb|EAZ42112.1| hypothetical protein OsJ_025595 [Oryza sativa (ja... 653 0.0 gb|EAZ09144.1| hypothetical protein OsI_030376 [Oryza sativa (in... 459 e-127 ref|NP_001063212.1| Os09g0423500 [Oryza sativa (japonica cultiva... 459 e-127 >ref|NP_001061407.1| Os08g0267300 [Oryza sativa (japonica cultivar-group)] dbj|BAC99940.1| putative 41 kD chloroplast nucleoid DNA binding protein [Oryza sativa (japonica cultivar-group)] dbj|BAF23321.1| Os08g0267300 [Oryza sativa (japonica cultivar-group)] Length = 524 Score = 772 bits (1994), Expect = 0.0 Identities = 412/526 (78%), Positives = 448/526 (85%), Gaps = 25/526 (4%) Frame = +2 Query: 89 QHHLLPRVLALLAVVVLVAGSGAHGSQRVVGK-SAVLALRELEWGATRKIQSRYAEAKLA 265 +H LL VLALL + V+VA G VVG+ SAVL LREL+WG++ ++ RY+++K Sbjct: 4 RHLLLLHVLALLLLAVVVAAGGG----AVVGRDSAVLQLRELQWGSSGQV--RYSQSKRF 57 Query: 266 E--MLGVHKKAEVA---RT-ANTVLELKHHSLTAISNHPAARERYLRRLLAADAARANSL 427 E M G HKKA A RT + TVLELKHHSLTAI +HPAA+E YLRRLLAAD ARANSL Sbjct: 58 EKKMTGEHKKAAAAARTRTRSTTVLELKHHSLTAIPDHPAAQETYLRRLLAADEARANSL 117 Query: 428 QLRNKAAYTQSGQ---------AAAEVPLTSGIRFQTLNYVTTIALGGRSSS---AANLT 571 QLRNKAA+TQSG+ A AEVPLTSGIRFQTLNYVTTIALGG SS A NLT Sbjct: 118 QLRNKAAFTQSGKKATAAAAAAAGAEVPLTSGIRFQTLNYVTTIALGGGGSSRAGAGNLT 177 Query: 572 VIVDTGSDLTWVQCKPCAFCYAQHDPLFDPASSVTYAAVPCNASACAASLKAATGTPGSC 751 VIVDTGSDLTWVQCKPC+ CYAQ DPLFDP+ S +YAAVPCNASAC ASLKAATG PGSC Sbjct: 178 VIVDTGSDLTWVQCKPCSVCYAQRDPLFDPSGSASYAAVPCNASACEASLKAATGVPGSC 237 Query: 752 AR-----GGSSSERCYYALAYGDGSFSRGVLATDTVDLGGANLDGFVFGCGLSNRGLFGG 916 A GG SERCYY+LAYGDGSFSRGVLATDTV LGGA++DGFVFGCGLSNRGLFGG Sbjct: 238 ATVGGGGGGGKSERCYYSLAYGDGSFSRGVLATDTVALGGASVDGFVFGCGLSNRGLFGG 297 Query: 917 TAGLMGLGRTELSLVSQTASRFGGVFSYCLPATMSVNATGSLSLGGDSSSYRNTTPVAYT 1096 TAGLMGLGRTELSLVSQTA RFGGVFSYCLPA S +A GSLSLGGD+SSYRN TPV+YT Sbjct: 298 TAGLMGLGRTELSLVSQTAPRFGGVFSYCLPAATSGDAAGSLSLGGDTSSYRNATPVSYT 357 Query: 1097 RMIADPAQPPFYFMNVTGAAVGGAAVTAAGLGASNVLIDSGTVITRLAPSVYRAVRAEFS 1276 RMIADPAQPPFYFMNVTGA+VGGAAV AAGLGA+NVL+DSGTVITRLAPSVYRAVRAEF+ Sbjct: 358 RMIADPAQPPFYFMNVTGASVGGAAVAAAGLGAANVLLDSGTVITRLAPSVYRAVRAEFA 417 Query: 1277 RQIAA-RYPAAPGFSILDTCYNLTGYNEVKLPLLTLRLEGGADMTVDASGMLFMVRKDGS 1453 RQ A RYPAAP FS+LD CYNLTG++EVK+PLLTLRLEGGADMTVDA+GMLFM RKDGS Sbjct: 418 RQFGAERYPAAPPFSLLDACYNLTGHDEVKVPLLTLRLEGGADMTVDAAGMLFMARKDGS 477 Query: 1454 QVCLAMASLSFEDQTPIIGNYQQKNKRVVYDTVGSKLGFADEDCSY 1591 QVCLAMASLSFEDQTPIIGNYQQKNKRVVYDTVGS+LGFADEDCSY Sbjct: 478 QVCLAMASLSFEDQTPIIGNYQQKNKRVVYDTVGSRLGFADEDCSY 523 >gb|EAZ06293.1| hypothetical protein OsI_027525 [Oryza sativa (indica cultivar-group)] Length = 525 Score = 769 bits (1986), Expect = 0.0 Identities = 411/524 (78%), Positives = 446/524 (85%), Gaps = 26/524 (4%) Frame = +2 Query: 98 LLPRVLALLAVVVLVAGSGAHGSQRVVGK-SAVLALRELEWGATRKIQSRYAEAKLAE-- 268 LL VLALL + V+VA G VVG+ SAVL LREL+WG++ ++ RY+++K E Sbjct: 7 LLLHVLALLLLAVVVAAGGG----AVVGRDSAVLQLRELQWGSSGQV--RYSQSKHFEKK 60 Query: 269 MLGVHKKAEVA---RT-ANTVLELKHHSLTAISNHPAARERYLRRLLAADAARANSLQLR 436 M G HKKA A RT + TVLELKHHSLTAI +HPAA+E YLRRLLAAD ARANSLQLR Sbjct: 61 MTGEHKKAAAAARTRTRSTTVLELKHHSLTAIPDHPAAQETYLRRLLAADEARANSLQLR 120 Query: 437 NKAAYTQSGQ----------AAAEVPLTSGIRFQTLNYVTTIALGGRSSS---AANLTVI 577 NKAA+TQSG+ A AEVPLTSGIRFQTLNYVTTIALGG SS A NLTVI Sbjct: 121 NKAAFTQSGKKATAAAAAAAAGAEVPLTSGIRFQTLNYVTTIALGGGGSSRAGAGNLTVI 180 Query: 578 VDTGSDLTWVQCKPCAFCYAQHDPLFDPASSVTYAAVPCNASACAASLKAATGTPGSCAR 757 VDTGSDLTWVQCKPC+ CYAQ DPLFDP+ S +YAAVPCNASAC ASLKAATG PGSCA Sbjct: 181 VDTGSDLTWVQCKPCSVCYAQRDPLFDPSGSASYAAVPCNASACEASLKAATGVPGSCAT 240 Query: 758 -----GGSSSERCYYALAYGDGSFSRGVLATDTVDLGGANLDGFVFGCGLSNRGLFGGTA 922 GG SERCYY+LAYGDGSFSRGVLATDTV LGGA++DGFVFGCGLSNRGLFGGTA Sbjct: 241 VGGGGGGGKSERCYYSLAYGDGSFSRGVLATDTVALGGASVDGFVFGCGLSNRGLFGGTA 300 Query: 923 GLMGLGRTELSLVSQTASRFGGVFSYCLPATMSVNATGSLSLGGDSSSYRNTTPVAYTRM 1102 GLMGLGRTELSLVSQTA RFGGVFSYCLPA S +A GSLSLGGD+SSYRN TPV+YTRM Sbjct: 301 GLMGLGRTELSLVSQTAPRFGGVFSYCLPAATSGDAAGSLSLGGDTSSYRNATPVSYTRM 360 Query: 1103 IADPAQPPFYFMNVTGAAVGGAAVTAAGLGASNVLIDSGTVITRLAPSVYRAVRAEFSRQ 1282 IADPAQPPFYFMNVTGA+VGGAAV AAGLGA+NVL+DSGTVITRLAPSVYRAVRAEF+RQ Sbjct: 361 IADPAQPPFYFMNVTGASVGGAAVAAAGLGAANVLLDSGTVITRLAPSVYRAVRAEFARQ 420 Query: 1283 IAA-RYPAAPGFSILDTCYNLTGYNEVKLPLLTLRLEGGADMTVDASGMLFMVRKDGSQV 1459 A RYPAAP FS+LD CYNLTG++EVK+PLLTLRLEGGADMTVDA+GMLFM RKDGSQV Sbjct: 421 FGAERYPAAPPFSLLDACYNLTGHDEVKVPLLTLRLEGGADMTVDAAGMLFMARKDGSQV 480 Query: 1460 CLAMASLSFEDQTPIIGNYQQKNKRVVYDTVGSKLGFADEDCSY 1591 CLAMASLSFEDQTPIIGNYQQKNKRVVYDTVGS+LGFADEDCSY Sbjct: 481 CLAMASLSFEDQTPIIGNYQQKNKRVVYDTVGSRLGFADEDCSY 524 >gb|EAZ42112.1| hypothetical protein OsJ_025595 [Oryza sativa (japonica cultivar-group)] Length = 477 Score = 653 bits (1684), Expect = 0.0 Identities = 364/526 (69%), Positives = 398/526 (75%), Gaps = 25/526 (4%) Frame = +2 Query: 89 QHHLLPRVLALLAVVVLVAGSGAHGSQRVVGK-SAVLALRELEWGATRKIQSRYAEAKLA 265 +H LL VLALL + V+VA G VVG+ SAVL LREL+WG++ ++ RY+++K Sbjct: 4 RHLLLLHVLALLLLAVVVAAGGG----AVVGRDSAVLQLRELQWGSSGQV--RYSQSKRF 57 Query: 266 E--MLGVHKKAEVA---RT-ANTVLELKHHSLTAISNHPAARERYLRRLLAADAARANSL 427 E M G HKKA A RT + TVLELKHHSLTAI +HPAA+E YLRRLLAAD ARANSL Sbjct: 58 EKKMTGEHKKAAAAARTRTRSTTVLELKHHSLTAIPDHPAAQETYLRRLLAADEARANSL 117 Query: 428 QLRNKAAYTQSGQ---------AAAEVPLTSGIRFQTLNYVTTIALGGRSSS---AANLT 571 QLRNKAA+TQSG+ A AEVPLTSGIRFQTLNYVTTIALGG SS A NLT Sbjct: 118 QLRNKAAFTQSGKKATAAAAAAAGAEVPLTSGIRFQTLNYVTTIALGGGGSSRAGAGNLT 177 Query: 572 VIVDTGSDLTWVQCKPCAFCYAQHDPLFDPASSVTYAAVPCNASACAASLKAATGTPGSC 751 VIVDTGSDLTWVQCKPC+ CYAQ DPLFDP+ S +YAAVPCNASAC ASLKAATG PGSC Sbjct: 178 VIVDTGSDLTWVQCKPCSVCYAQRDPLFDPSGSASYAAVPCNASACEASLKAATGVPGSC 237 Query: 752 AR-----GGSSSERCYYALAYGDGSFSRGVLATDTVDLGGANLDGFVFGCGLSNRGLFGG 916 A GG SERCYY+LAYGDGSFSRGVLATDTV LGGA++DGFVFGCGLSNRGLFGG Sbjct: 238 ATVGGGGGGGKSERCYYSLAYGDGSFSRGVLATDTVALGGASVDGFVFGCGLSNRGLFGG 297 Query: 917 TAGLMGLGRTELSLVSQTASRFGGVFSYCLPATMSVNATGSLSLGGDSSSYRNTTPVAYT 1096 TAGLMGLG P Sbjct: 298 TAGLMGLG-----------------------------------------------PDGAL 310 Query: 1097 RMIADPAQPPFYFMNVTGAAVGGAAVTAAGLGASNVLIDSGTVITRLAPSVYRAVRAEFS 1276 + D A PPFYFMNVTGA+VGGAAV AAGLGA+NVL+DSGTVITRLAPSVYRAVRAEF+ Sbjct: 311 AGLPDGAPPPFYFMNVTGASVGGAAVAAAGLGAANVLLDSGTVITRLAPSVYRAVRAEFA 370 Query: 1277 RQIAA-RYPAAPGFSILDTCYNLTGYNEVKLPLLTLRLEGGADMTVDASGMLFMVRKDGS 1453 RQ A RYPAAP FS+LD CYNLTG++EVK+PLLTLRLEGGADMTVDA+GMLFM RKDGS Sbjct: 371 RQFGAERYPAAPPFSLLDACYNLTGHDEVKVPLLTLRLEGGADMTVDAAGMLFMARKDGS 430 Query: 1454 QVCLAMASLSFEDQTPIIGNYQQKNKRVVYDTVGSKLGFADEDCSY 1591 QVCLAMASLSFEDQTPIIGNYQQKNKRVVYDTVGS+LGFADEDCSY Sbjct: 431 QVCLAMASLSFEDQTPIIGNYQQKNKRVVYDTVGSRLGFADEDCSY 476 >gb|EAZ09144.1| hypothetical protein OsI_030376 [Oryza sativa (indica cultivar-group)] Length = 472 Score = 459 bits (1180), Expect = e-127 Identities = 244/448 (54%), Positives = 310/448 (69%), Gaps = 10/448 (2%) Frame = +2 Query: 281 HKKAEVARTANTVLELKHHSLT----AISNHPAARERYLRRLLAADAARANSLQLRNKAA 448 H A + T+LEL+HH + + +RE L L ++DAAR +SLQ R Sbjct: 38 HHLRSRAESGATILELRHHGGGGGGGSGKSGGRSREEELGGLFSSDAARVSSLQRRAGGG 97 Query: 449 YTQSGQAAA-----EVPLTSGIRFQTLNYVTTIALGGRSSSAANLTVIVDTGSDLTWVQC 613 +AAA VP+TSG R +TLNYV T+ LGG + TVIVDT S+LTWVQC Sbjct: 98 SWAEDEAAAAAATGRVPVTSGARLRTLNYVATVGLGGGEA-----TVIVDTASELTWVQC 152 Query: 614 KPCAFCYAQHDPLFDPASSVTYAAVPCNASACAASLKAATGTP-GSCARGGSSSERCYYA 790 PCA C+ Q PLFDPASS +YA +PCN+S+C A L+ ATG+ G+C GG C Y Sbjct: 153 APCASCHDQQGPLFDPASSPSYAVLPCNSSSCDA-LQVATGSAAGAC--GGGEQPSCSYT 209 Query: 791 LAYGDGSFSRGVLATDTVDLGGANLDGFVFGCGLSNRGLFGGTAGLMGLGRTELSLVSQT 970 L+Y DGS+S+GVLA D + L G +DGFVFGCG SN+G FGGT+GLMGLGR++LSL+SQT Sbjct: 210 LSYRDGSYSQGVLAHDKLSLAGEVIDGFVFGCGTSNQGPFGGTSGLMGLGRSQLSLISQT 269 Query: 971 ASRFGGVFSYCLPATMSVNATGSLSLGGDSSSYRNTTPVAYTRMIADPAQPPFYFMNVTG 1150 +FGGVFSYCLP S ++GSL LG D+S YRN+TP+ YT M++DP Q PFYF+N+TG Sbjct: 270 MDQFGGVFSYCLPLKES-ESSGSLVLGDDTSVYRNSTPIVYTTMVSDPVQGPFYFVNLTG 328 Query: 1151 AAVGGAAVTAAGLGASNVLIDSGTVITRLAPSVYRAVRAEFSRQIAARYPAAPGFSILDT 1330 +GG V ++ A V++DSGT+IT L PSVY AV+AEF Q A YP APGFSILDT Sbjct: 329 ITIGGQEVESS---AGKVIVDSGTIITSLVPSVYNAVKAEFLSQFA-EYPQAPGFSILDT 384 Query: 1331 CYNLTGYNEVKLPLLTLRLEGGADMTVDASGMLFMVRKDGSQVCLAMASLSFEDQTPIIG 1510 C+NLTG+ EV++P L EG ++ VD+SG+L+ V D SQVCLA+ASL E +T IIG Sbjct: 385 CFNLTGFREVQIPSLKFVFEGNVEVEVDSSGVLYFVSSDSSQVCLALASLKSEYETSIIG 444 Query: 1511 NYQQKNKRVVYDTVGSKLGFADEDCSYI 1594 NYQQKN RV++DT+GS++GFA E C YI Sbjct: 445 NYQQKNLRVIFDTLGSQIGFAQETCDYI 472 >ref|NP_001063212.1| Os09g0423500 [Oryza sativa (japonica cultivar-group)] dbj|BAD33424.1| putative nucleoid DNA-binding protein cnd41, chloroplast [Oryza sativa (japonica cultivar-group)] dbj|BAD33657.1| putative nucleoid DNA-binding protein cnd41, chloroplast [Oryza sativa (japonica cultivar-group)] dbj|BAF25126.1| Os09g0423500 [Oryza sativa (japonica cultivar-group)] Length = 473 Score = 459 bits (1180), Expect = e-127 Identities = 244/448 (54%), Positives = 310/448 (69%), Gaps = 10/448 (2%) Frame = +2 Query: 281 HKKAEVARTANTVLELKHHSLT----AISNHPAARERYLRRLLAADAARANSLQLRNKAA 448 H A + T+LEL+HH + + +RE L L ++DAAR +SLQ R Sbjct: 39 HHLRSRAESGATILELRHHGGGGGGGSGKSGGRSREEELGGLFSSDAARVSSLQRRAGGG 98 Query: 449 YTQSGQAAA-----EVPLTSGIRFQTLNYVTTIALGGRSSSAANLTVIVDTGSDLTWVQC 613 +AAA VP+TSG R +TLNYV T+ LGG + TVIVDT S+LTWVQC Sbjct: 99 SWAEDEAAAAAATGRVPVTSGARLRTLNYVATVGLGGGEA-----TVIVDTASELTWVQC 153 Query: 614 KPCAFCYAQHDPLFDPASSVTYAAVPCNASACAASLKAATGTP-GSCARGGSSSERCYYA 790 PCA C+ Q PLFDPASS +YA +PCN+S+C A L+ ATG+ G+C GG C Y Sbjct: 154 APCASCHDQQGPLFDPASSPSYAVLPCNSSSCDA-LQVATGSAAGAC--GGGEQPSCSYT 210 Query: 791 LAYGDGSFSRGVLATDTVDLGGANLDGFVFGCGLSNRGLFGGTAGLMGLGRTELSLVSQT 970 L+Y DGS+S+GVLA D + L G +DGFVFGCG SN+G FGGT+GLMGLGR++LSL+SQT Sbjct: 211 LSYRDGSYSQGVLAHDKLSLAGEVIDGFVFGCGTSNQGPFGGTSGLMGLGRSQLSLISQT 270 Query: 971 ASRFGGVFSYCLPATMSVNATGSLSLGGDSSSYRNTTPVAYTRMIADPAQPPFYFMNVTG 1150 +FGGVFSYCLP S ++GSL LG D+S YRN+TP+ YT M++DP Q PFYF+N+TG Sbjct: 271 MDQFGGVFSYCLPLKES-ESSGSLVLGDDTSVYRNSTPIVYTTMVSDPVQGPFYFVNLTG 329 Query: 1151 AAVGGAAVTAAGLGASNVLIDSGTVITRLAPSVYRAVRAEFSRQIAARYPAAPGFSILDT 1330 +GG V ++ A V++DSGT+IT L PSVY AV+AEF Q A YP APGFSILDT Sbjct: 330 ITIGGQEVESS---AGKVIVDSGTIITSLVPSVYNAVKAEFLSQFA-EYPQAPGFSILDT 385 Query: 1331 CYNLTGYNEVKLPLLTLRLEGGADMTVDASGMLFMVRKDGSQVCLAMASLSFEDQTPIIG 1510 C+NLTG+ EV++P L EG ++ VD+SG+L+ V D SQVCLA+ASL E +T IIG Sbjct: 386 CFNLTGFREVQIPSLKFVFEGNVEVEVDSSGVLYFVSSDSSQVCLALASLKSEYETSIIG 445 Query: 1511 NYQQKNKRVVYDTVGSKLGFADEDCSYI 1594 NYQQKN RV++DT+GS++GFA E C YI Sbjct: 446 NYQQKNLRVIFDTLGSQIGFAQETCDYI 473