BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphylf034k19
         (1003 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK18841.1|AC082645_11 putative RNA polymerase I subunit [Ory...   205   3e-51
ref|NP_001051059.1| Os03g0711700 [Oryza sativa (japonica cultiva...   189   2e-46
gb|EDQ70106.1| predicted protein [Physcomitrella patens subsp. p...   138   5e-31
ref|NP_566786.1| transcription factor S-II (TFIIS) domain-contai...   108   6e-22
ref|XP_001689933.1| DNA-directed RNA polymerase I subunit [Chlam...   107   2e-21

>gb|AAK18841.1|AC082645_11 putative RNA polymerase I subunit [Oryza sativa]
 gb|ABF98516.1| Transcription factor S-II family protein, expressed [Oryza sativa
           (japonica cultivar-group)]
          Length = 126

 Score =  205 bits (522), Expect = 3e-51
 Identities = 96/125 (76%), Positives = 109/125 (87%), Gaps = 1/125 (0%)
 Frame = +3

Query: 306 MAFWQARDFFFCGVCGTLLTFDSVRSASCPLCGFKRKAKEIEGKETRYIITDEDIRRELK 485
           MAFWQARDF FCGVCGTLL FDSVRSASCPLCGFKRKAK+IEGKETRY +T EDIRRELK
Sbjct: 1   MAFWQARDFLFCGVCGTLLKFDSVRSASCPLCGFKRKAKDIEGKETRYTVTAEDIRRELK 60

Query: 486 IEPFVIIESAPK-EDERVQRATVNETCPKCRNPTLEYYTKQLRSADEGQTVFYECPECRH 662
           ++P+VI+E+  K ED  V+RATVN+ C KC+NP L+YYTKQLRSADEGQTVFY+C  CRH
Sbjct: 61  LDPYVILETTLKEEDVIVERATVNKECEKCKNPELQYYTKQLRSADEGQTVFYKCANCRH 120

Query: 663 KFAVN 677
           +F  N
Sbjct: 121 EFNEN 125


>ref|NP_001051059.1| Os03g0711700 [Oryza sativa (japonica cultivar-group)]
 dbj|BAF12973.1| Os03g0711700 [Oryza sativa (japonica cultivar-group)]
 gb|EAZ28342.1| hypothetical protein OsJ_011825 [Oryza sativa (japonica
           cultivar-group)]
          Length = 156

 Score =  189 bits (481), Expect = 2e-46
 Identities = 95/155 (61%), Positives = 110/155 (70%), Gaps = 31/155 (20%)
 Frame = +3

Query: 306 MAFWQARDFFFCGVCGTLLTFDSVRSASCPLCGFKRKAK--------------------- 422
           MAFWQARDF FCGVCGTLL FDSVRSASCPLCGFKRKAK                     
Sbjct: 1   MAFWQARDFLFCGVCGTLLKFDSVRSASCPLCGFKRKAKGRRLPHLSPCKALGCVLLAAD 60

Query: 423 ---------EIEGKETRYIITDEDIRRELKIEPFVIIESAPKEDER-VQRATVNETCPKC 572
                    +IEGKETRY +T EDIRRELK++P+VI+E+  KE++  V+RATVN+ C KC
Sbjct: 61  AFVLFFYGADIEGKETRYTVTAEDIRRELKLDPYVILETTLKEEDVIVERATVNKECEKC 120

Query: 573 RNPTLEYYTKQLRSADEGQTVFYECPECRHKFAVN 677
           +NP L+YYTKQLRSADEGQTVFY+C  CRH+F  N
Sbjct: 121 KNPELQYYTKQLRSADEGQTVFYKCANCRHEFNEN 155


>gb|EDQ70106.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 130

 Score =  138 bits (348), Expect = 5e-31
 Identities = 65/124 (52%), Positives = 85/124 (68%), Gaps = 4/124 (3%)
 Frame = +3

Query: 318 QARDFFFCGVCGTLLTFDSVRSASCPLCGFKRKAKEIEGKETRYIITDEDIRRELKIEPF 497
           + +D  FC +CG+LL+FDS   ASC LC  +R  ++ +GKE  Y  T +D  R L ++  
Sbjct: 6   EQQDCLFCNLCGSLLSFDSASFASCLLCHNQRSVQDFQGKEIWYRSTPQDFMRRLGVDLL 65

Query: 498 VIIES----APKEDERVQRATVNETCPKCRNPTLEYYTKQLRSADEGQTVFYECPECRHK 665
           +  E     A + DE  QRA VN+ CP+C+NP+LEYYTKQLRSADEGQTVFYECP+C HK
Sbjct: 66  IQPEETQVKAKESDEMQQRAVVNDECPRCKNPSLEYYTKQLRSADEGQTVFYECPKCHHK 125

Query: 666 FAVN 677
           F+ N
Sbjct: 126 FSQN 129


>ref|NP_566786.1| transcription factor S-II (TFIIS) domain-containing protein
           [Arabidopsis thaliana]
 dbj|BAB01057.1| unnamed protein product [Arabidopsis thaliana]
 gb|AAM60883.1| putative RNA polymerase I subunit [Arabidopsis thaliana]
 gb|ABD38906.1| At3g25940 [Arabidopsis thaliana]
          Length = 119

 Score =  108 bits (270), Expect = 6e-22
 Identities = 51/114 (44%), Positives = 66/114 (57%)
 Frame = +3

Query: 327 DFFFCGVCGTLLTFDSVRSASCPLCGFKRKAKEIEGKETRYIITDEDIRRELKIEPFVII 506
           +F FC +CGT+L   S + A CP C   R AK+I  KE  Y ++ EDIRREL I  F   
Sbjct: 8   EFLFCNLCGTMLVLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELGISLF--- 64

Query: 507 ESAPKEDERVQRATVNETCPKCRNPTLEYYTKQLRSADEGQTVFYECPECRHKF 668
               K     +   + + C KC++P L Y T+Q RSADEGQT +Y CP C H+F
Sbjct: 65  --GEKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRF 116


>ref|XP_001689933.1| DNA-directed RNA polymerase I subunit [Chlamydomonas reinhardtii]
 gb|EDP09671.1| DNA-directed RNA polymerase I subunit [Chlamydomonas reinhardtii]
          Length = 124

 Score =  107 bits (266), Expect = 2e-21
 Identities = 58/124 (46%), Positives = 73/124 (58%), Gaps = 5/124 (4%)
 Frame = +3

Query: 324 RDFFFCGVCGTLLTFDSVRS-ASCPLCGFKRKAKEIEGKETRYIITDEDIRRELKIEPFV 500
           +D+ FC   G LL  D  R  A+CP+ G++R   E+   +       ED RR   +EP V
Sbjct: 5   KDWMFCPTSGYLLHLDPKRQVAACPVSGYERSLAELSSVKVVLRTDMEDYRRRFALEPLV 64

Query: 501 IIESAPKEDERV----QRATVNETCPKCRNPTLEYYTKQLRSADEGQTVFYECPECRHKF 668
                  EDE +    +RATV+E CPKC +  LEYYT QLRSADEGQTVFYEC  C HK+
Sbjct: 65  ----KSVEDEELLKGRKRATVDEPCPKCNHRQLEYYTMQLRSADEGQTVFYECKNCGHKY 120

Query: 669 AVNT 680
           + NT
Sbjct: 121 SQNT 124