BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphylf026j20
         (970 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF96541.1| Transcription initiation factor IID, 31kD subunit...   259   2e-67
ref|NP_001050338.1| Os03g0408500 [Oryza sativa (japonica cultiva...   245   4e-63
gb|EAZ27282.1| hypothetical protein OsJ_010765 [Oryza sativa (ja...   215   4e-54
gb|ABK94051.1| unknown [Populus trichocarpa]                          186   2e-45
ref|NP_175816.1| TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR...   184   1e-44

>gb|ABF96541.1| Transcription initiation factor IID, 31kD subunit family protein,
           expressed [Oryza sativa (japonica cultivar-group)]
          Length = 224

 Score =  259 bits (662), Expect = 2e-67
 Identities = 143/198 (72%), Positives = 149/198 (75%)
 Frame = +3

Query: 93  DEPRDARVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYVGDVLGDAQVYADHAGKTQLDA 272
           DEPRDARVVRELLRSMGL EGEYEPRVVHQFLDLAYRYVGDVLGDAQVYADHAGK QLDA
Sbjct: 32  DEPRDARVVRELLRSMGLSEGEYEPRVVHQFLDLAYRYVGDVLGDAQVYADHAGKPQLDA 91

Query: 273 DDVRLAIQAKVNFSFSQPPPREVLLELARSRNKIPLPKSIAPPGSIPLPPEQDTLLSQNY 452
           DDVRLAIQ+KVNFSFSQPPPREVLLE+AR+RNKIPLPKSIAPPGSIPLPPEQDTLLSQNY
Sbjct: 92  DDVRLAIQSKVNFSFSQPPPREVLLEVARNRNKIPLPKSIAPPGSIPLPPEQDTLLSQNY 151

Query: 453 QXXXXXXXXXXXXXXXXXNEGXXXXXXXXXXXYSQDQRSNEQQQLPQHTQGQRVSFQLNX 632
           Q                 N G            S +    EQQQLPQH  GQRVSFQLN 
Sbjct: 152 QLLAPLKPPPQFEETEDDNAGANPTPTSNPSNPSPN-NLQEQQQLPQH--GQRVSFQLN- 207

Query: 633 XXXXXXKRPRMTMEQLNM 686
                  + R TM+QLNM
Sbjct: 208 --AVAAAKRRGTMDQLNM 223


>ref|NP_001050338.1| Os03g0408500 [Oryza sativa (japonica cultivar-group)]
 gb|AAP12985.1| putative transcription initiation factor [Oryza sativa (japonica
           cultivar-group)]
 dbj|BAF12252.1| Os03g0408500 [Oryza sativa (japonica cultivar-group)]
          Length = 250

 Score =  245 bits (625), Expect = 4e-63
 Identities = 143/224 (63%), Positives = 149/224 (66%), Gaps = 26/224 (11%)
 Frame = +3

Query: 93  DEPRDARVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYVGDVLGDAQVYADHAGKTQLDA 272
           DEPRDARVVRELLRSMGL EGEYEPRVVHQFLDLAYRYVGDVLGDAQVYADHAGK QLDA
Sbjct: 32  DEPRDARVVRELLRSMGLSEGEYEPRVVHQFLDLAYRYVGDVLGDAQVYADHAGKPQLDA 91

Query: 273 DDVRLAIQAKVNFSFSQPPPRE--------------------------VLLELARSRNKI 374
           DDVRLAIQ+KVNFSFSQPPPRE                          VLLE+AR+RNKI
Sbjct: 92  DDVRLAIQSKVNFSFSQPPPRECSEFFHSDQDFRSRSLPSDNPLFFSMVLLEVARNRNKI 151

Query: 375 PLPKSIAPPGSIPLPPEQDTLLSQNYQXXXXXXXXXXXXXXXXXNEGXXXXXXXXXXXYS 554
           PLPKSIAPPGSIPLPPEQDTLLSQNYQ                 N G            S
Sbjct: 152 PLPKSIAPPGSIPLPPEQDTLLSQNYQLLAPLKPPPQFEETEDDNAGANPTPTSNPSNPS 211

Query: 555 QDQRSNEQQQLPQHTQGQRVSFQLNXXXXXXXKRPRMTMEQLNM 686
            +    EQQQLPQH  GQRVSFQLN        + R TM+QLNM
Sbjct: 212 PN-NLQEQQQLPQH--GQRVSFQLN---AVAAAKRRGTMDQLNM 249


>gb|EAZ27282.1| hypothetical protein OsJ_010765 [Oryza sativa (japonica
           cultivar-group)]
          Length = 204

 Score =  215 bits (547), Expect = 4e-54
 Identities = 127/209 (60%), Positives = 134/209 (64%), Gaps = 26/209 (12%)
 Frame = +3

Query: 138 MGLGEGEYEPRVVHQFLDLAYRYVGDVLGDAQVYADHAGKTQLDADDVRLAIQAKVNFSF 317
           MGL EGEYEPRVVHQFLDLAYRYVG+VLGDAQVYADHAGK QLDADDVRLAIQ+KVNFSF
Sbjct: 1   MGLSEGEYEPRVVHQFLDLAYRYVGNVLGDAQVYADHAGKPQLDADDVRLAIQSKVNFSF 60

Query: 318 SQPPPRE--------------------------VLLELARSRNKIPLPKSIAPPGSIPLP 419
           SQPPPRE                          VLLE+AR+RNKIPLPKSIAPPGSIPLP
Sbjct: 61  SQPPPRECSEFFHSDQDFRSRSLPSDNPLFFSMVLLEVARNRNKIPLPKSIAPPGSIPLP 120

Query: 420 PEQDTLLSQNYQXXXXXXXXXXXXXXXXXNEGXXXXXXXXXXXYSQDQRSNEQQQLPQHT 599
           PEQDTLLSQNYQ                 N G            S +    EQQQLPQH 
Sbjct: 121 PEQDTLLSQNYQLLAPLKPPPQFEETEDDNAGANPTPTSNPSNPSPN-NLQEQQQLPQH- 178

Query: 600 QGQRVSFQLNXXXXXXXKRPRMTMEQLNM 686
            GQRVSFQLN        + R TM+QLNM
Sbjct: 179 -GQRVSFQLN---AVAAAKRRGTMDQLNM 203


>gb|ABK94051.1| unknown [Populus trichocarpa]
          Length = 175

 Score =  186 bits (472), Expect = 2e-45
 Identities = 107/190 (56%), Positives = 126/190 (66%)
 Frame = +3

Query: 93  DEPRDARVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYVGDVLGDAQVYADHAGKTQLDA 272
           D PRDA++V+ LL+SMG+ +  YEPRVVHQFL+L YRYV DVL DAQVY++HA KT +D 
Sbjct: 7   DMPRDAKIVKSLLKSMGVED--YEPRVVHQFLELWYRYVVDVLTDAQVYSEHANKTAIDC 64

Query: 273 DDVRLAIQAKVNFSFSQPPPREVLLELARSRNKIPLPKSIAPPGSIPLPPEQDTLLSQNY 452
           DDV+LAIQ+KVNFSFSQPPPREVLLELAR+RNKIPLPKSIA PG IPLPPEQDTL+S NY
Sbjct: 65  DDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPKSIAGPG-IPLPPEQDTLISPNY 123

Query: 453 QXXXXXXXXXXXXXXXXXNEGXXXXXXXXXXXYSQDQRSNEQQQLPQHTQGQRVSFQLNX 632
           Q                 +E             +   +S EQ+  P     QRVSF L  
Sbjct: 124 QLAIPKKRTAQAIEETEEDE-----------ESADPNQSQEQKTDPPQLTPQRVSFPLT- 171

Query: 633 XXXXXXKRPR 662
                 KRP+
Sbjct: 172 ------KRPK 175


>ref|NP_175816.1| TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT);
           transcription initiation factor [Arabidopsis thaliana]
 gb|AAD25788.1|AC006577_24 Similar to gb|U21858 transcription initiation factor TFIID 31KD
           subunit (TAFII32) from Homo sapiens. [Arabidopsis
           thaliana]
 gb|AAF65406.1|AF238327_1 putative TATA binding protein associated factor 21kDa subunit
           [Arabidopsis thaliana]
 gb|AAM65438.1| transcriptional activation factor TAFII32, putative [Arabidopsis
           thaliana]
 gb|AAR28026.1| TAF9 [Arabidopsis thaliana]
 gb|ABF58955.1| At1g54140 [Arabidopsis thaliana]
          Length = 183

 Score =  184 bits (466), Expect = 1e-44
 Identities = 105/181 (58%), Positives = 125/181 (69%), Gaps = 2/181 (1%)
 Frame = +3

Query: 93  DEPRDARVVRELLRSMGLGEGEYEPRVVHQFLDLAYRYVGDVLGDAQVYADHAGKTQLDA 272
           D PRDA++V+ LL+SMG+ +  YEPRV+HQFL+L YRYV +VL DAQVY++HA K  +D 
Sbjct: 8   DVPRDAKIVKSLLKSMGVED--YEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNIDC 65

Query: 273 DDVRLAIQAKVNFSFSQPPPREVLLELARSRNKIPLPKSIAPPGSIPLPPEQDTLLSQNY 452
           DDV+LAIQ+KVNFSFSQPPPREVLLELA SRNKIPLPKSIA PG +PLPPEQDTLLS NY
Sbjct: 66  DDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPG-VPLPPEQDTLLSPNY 124

Query: 453 QXXXXXXXXXXXXXXXXXNEGXXXXXXXXXXXYSQDQRSNEQQ--QLPQHTQGQRVSFQL 626
           Q                 +E             SQ+Q+  +QQ   LP  T  QRVSF L
Sbjct: 125 QLVIPKKSVSTEPEETEDDE-----EMTDPGQSSQEQQQQQQQTSDLPSQTP-QRVSFPL 178

Query: 627 N 629
           +
Sbjct: 179 S 179