BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphylf025d01
         (1881 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea ...   331   e-125
gb|AAV59441.1| putative polyprotein [Oryza sativa (japonica cult...   202   7e-75
gb|AAV31347.1| putative polyprotein [Oryza sativa (japonica cult...   199   9e-75
gb|ABA93737.1| retrotransposon protein, putative, Ty1-copia subc...   195   4e-74
gb|ABA93966.1| retrotransposon protein, putative, Ty1-copia subc...   195   4e-74

>gb|AAP94586.1| putative retrotransposon RIRE1 poly protein [Zea mays]
          Length = 1309

 Score =  331 bits (849), Expect(2) = e-125
 Identities = 173/291 (59%), Positives = 214/291 (73%), Gaps = 12/291 (4%)
 Frame = +3

Query: 696  MASSSGVVKPEVFDGANFKRWQAKTKLWLTDLRLFWVISTPLMFPLET-----------A 842
            MASSS V+KPE FDGA+FKRWQ KT++WLTDL+LFWV+++ +                 A
Sbjct: 18   MASSSDVIKPEAFDGASFKRWQIKTRMWLTDLKLFWVVTSAVPQAASDDSDDAAKAAALA 77

Query: 843  EMTRWEDANNSALARLLAVLSNRLFDVYVTFTNAKQLWDELDEKYSEGDNGNESFITAAY 1022
            E  +W++AN + L+RLL VLSNRLFDVY  FT+AK LW +L+ ++SE DNGNESF T  Y
Sbjct: 78   EKAKWDEANEACLSRLLNVLSNRLFDVYSAFTSAKGLWTDLENEFSEVDNGNESFTTENY 137

Query: 1023 LNYKMVEGRSVMEQLHELQLHVRDLNQYDCLLPESFQVNVILAKLPPSWRDFVTARRHKK 1202
            LNYKMVEGRSVMEQL E+QL VRDL QY C+LP+SFQVN ILAKLPPSWRDFVT+RRH K
Sbjct: 138  LNYKMVEGRSVMEQLQEIQLLVRDLVQYGCVLPDSFQVNAILAKLPPSWRDFVTSRRHMK 197

Query: 1203 EHLTLNELSAAINVEERARAGDSKGKAQVQAHLVEVKSTGGSGNQKFKNQPKIKL-QGKN 1379
            + +TL ELSAAINVEERAR+  +K   Q+QAH+VE K       +K KN P+  L Q K+
Sbjct: 198  KQMTLTELSAAINVEERARS-SNKPSQQLQAHVVE-KGGDRKFQKKKKNSPQKNLNQPKS 255

Query: 1380 MKKKKKEDIVCFVCGVAGHKANHCRNRKGKGPSPAQHKGLKAEVNVVLDNT 1532
             K KKKED +C+VCGV+GH A  C+ RKGKGP P + +G     NVV+++T
Sbjct: 256  KKMKKKEDFICYVCGVSGHTARRCKLRKGKGPPPQRKEG-----NVVVNST 301



 Score =  139 bits (351), Expect(2) = e-125
 Identities = 73/116 (62%), Positives = 88/116 (75%), Gaps = 10/116 (8%)
 Frame = +2

Query: 1553 SGSLLMGNGAAATVRGIGQVCLKLTSGKTLILRDVLYVPAMTRNLISGSMLCRQGIKLVF 1732
            S  +LMGNG  A VRG GQV LKLTSGKTL+L+DVLYVP+M+RNLIS S+LCRQG+KLVF
Sbjct: 342  SAPVLMGNGVPAAVRGTGQVYLKLTSGKTLVLKDVLYVPSMSRNLISVSLLCRQGLKLVF 401

Query: 1733 ESNKVVLTKFSTFVCKGYDSGGMFRLSILDS----------NNVNIFNVSHCNKLH 1870
            ESNKVVL+KF TFV K Y+SGG+FRLS+L++          NN +I N+ H    H
Sbjct: 402  ESNKVVLSKFGTFVGKSYESGGLFRLSVLNNHSSYHVNVVCNNDSINNIWHSRLCH 457


>gb|AAV59441.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1225

 Score =  202 bits (514), Expect(2) = 7e-75
 Identities = 108/296 (36%), Positives = 161/296 (54%), Gaps = 4/296 (1%)
 Frame = +3

Query: 696  MASSSGVVKPEVFDGANFKRWQAKTKLWLTDLRLFWVISTPLMFPLETAEMTRWEDANNS 875
            MA  +  ++P+ F G NFKRWQ +  LWLT ++ FWV +      L   +  ++E+A   
Sbjct: 1    MAGFADALRPDKFTGVNFKRWQIRVTLWLTAMKCFWVSTGKPEGVLTAEQQKQFEEATTL 60

Query: 876  ALARLLAVLSNRLFDVYVTFTNAKQLWDELDEKYSEGDNGNESFITAAYLNYKMVEGRSV 1055
             +  +L+VL +RL +VY+  T+AK+LWD L+ K+   D  N+ +I   + +YKM + RSV
Sbjct: 61   FVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSV 120

Query: 1056 MEQLHELQLHVRDLNQYDCLLPESFQVNVILAKLPPSWRDFVTARRHKKEHLTLNELSAA 1235
            +EQ HE+Q   ++L    C+LP+ F    I+AKLPPSWR F TA +HK++  ++  L A+
Sbjct: 121  VEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTALKHKRQEYSVEGLIAS 180

Query: 1236 INVEERARAGDSKGK---AQVQAHLVEVKSTGGSGNQKFKNQPKIKLQGKNMKKKKKEDI 1406
            ++VEE+AR  D+  K    Q  A++V        G  K +     K Q KN     +++ 
Sbjct: 181  LDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDER 240

Query: 1407 VCFVCGVAGHKANHCRNRKG-KGPSPAQHKGLKAEVNVVLDNTSSEGVKVVDPS*W 1571
             CFVCG  GH A  C  RKG K P+    K      NV + NT      V   + W
Sbjct: 241  TCFVCGQVGHLARKCPQRKGMKAPAGQTSK----SANVTIGNTGDGSGYVNQSTNW 292



 Score =  101 bits (252), Expect(2) = 7e-75
 Identities = 49/88 (55%), Positives = 67/88 (76%)
 Frame = +2

Query: 1559 SLLMGNGAAATVRGIGQVCLKLTSGKTLILRDVLYVPAMTRNLISGSMLCRQGIKLVFES 1738
            ++LMGNG+ A+V G+G V L  TSGK + L++V +VP++ RNL+SGS L R G KLVFES
Sbjct: 305  TVLMGNGSHASVHGVGMVDLMFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFES 364

Query: 1739 NKVVLTKFSTFVCKGYDSGGMFRLSILD 1822
            NKVV++K   F+ KGY+ GG+FR S+ D
Sbjct: 365  NKVVVSKHGYFIGKGYECGGLFRFSLSD 392


>gb|AAV31347.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1059

 Score =  199 bits (506), Expect(2) = 9e-75
 Identities = 104/283 (36%), Positives = 157/283 (55%), Gaps = 4/283 (1%)
 Frame = +3

Query: 696  MASSSGVVKPEVFDGANFKRWQAKTKLWLTDLRLFWVISTPLMFPLETAEMTRWEDANNS 875
            MA  +  ++P+ F G +FKRWQ +  LWLT ++ FWV +      L   +  ++E+A   
Sbjct: 124  MAGFADALRPDKFTGVHFKRWQIRVTLWLTTMKCFWVSTGKSEGVLTAEQQKQFEEATTL 183

Query: 876  ALARLLAVLSNRLFDVYVTFTNAKQLWDELDEKYSEGDNGNESFITAAYLNYKMVEGRSV 1055
             +  +L+VL +RL +VY+  T+AK+LWD L+ K+   D  N+ +I   + +YKM + RSV
Sbjct: 184  FVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMKQFHDYKMADNRSV 243

Query: 1056 MEQLHELQLHVRDLNQYDCLLPESFQVNVILAKLPPSWRDFVTARRHKKEHLTLNELSAA 1235
            +EQ HE+Q   ++L    C+LP+ F    I+ KLPPSWR F TA +HK++  ++  L A+
Sbjct: 244  VEQAHEIQTMAKELELLKCVLPDKFVAGCIIVKLPPSWRSFGTALKHKRQEYSVEGLIAS 303

Query: 1236 INVEERARAGDSKGK---AQVQAHLVEVKSTGGSGNQKFKNQPKIKLQGKNMKKKKKEDI 1406
            ++VEE+AR  D+  K    Q  A++V        G  K +     K Q KN     +++ 
Sbjct: 304  LDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDER 363

Query: 1407 VCFVCGVAGHKANHCRNRKG-KGPSPAQHKGLKAEVNVVLDNT 1532
             CFVCG  GH A  C  RKG K P+    K      NV + NT
Sbjct: 364  TCFVCGQVGHLARKCPQRKGMKAPAGQTSK----SANVTIGNT 402



 Score =  104 bits (259), Expect(2) = 9e-75
 Identities = 52/105 (49%), Positives = 76/105 (72%)
 Frame = +2

Query: 1559 SLLMGNGAAATVRGIGQVCLKLTSGKTLILRDVLYVPAMTRNLISGSMLCRQGIKLVFES 1738
            ++LMGNG+ A+V G+G V LK TSGK + L++V +VP++ RNL+SGS L R G KLVFES
Sbjct: 436  TVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFES 495

Query: 1739 NKVVLTKFSTFVCKGYDSGGMFRLSILDSNNVNIFNVSHCNKLHD 1873
            NKVV++K   F+ KG++ GG+FR S+ D  N ++ ++  C  + D
Sbjct: 496  NKVVVSKHGYFIGKGFECGGLFRFSLSDFCNKSVNHI--CGSVDD 538


>gb|ABA93737.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            (japonica cultivar-group)]
          Length = 1579

 Score =  195 bits (496), Expect(2) = 4e-74
 Identities = 103/283 (36%), Positives = 158/283 (55%), Gaps = 4/283 (1%)
 Frame = +3

Query: 696  MASSSGVVKPEVFDGANFKRWQAKTKLWLTDLRLFWVISTPLMFPLETAEMTRWEDANNS 875
            MA  +  ++P+ F G +FKRWQ +  LWLT ++ FWV +   +  L   +  ++E+A   
Sbjct: 301  MAGFADALRPDKFTGVHFKRWQIRVTLWLTAMKCFWVSTGKPVGVLTAEQQKQFEEATTL 360

Query: 876  ALARLLAVLSNRLFDVYVTFTNAKQLWDELDEKYSEGDNGNESFITAAYLNYKMVEGRSV 1055
             +  +L+VL +RL +VY+  T+AK+LWD L+ K+   D  N+ +I   + +YKM + RSV
Sbjct: 361  FVGCILSVLGDRLVEVYMHMTDAKELWDALNTKFGATDASNDLYIMEQFHDYKMADNRSV 420

Query: 1056 MEQLHELQLHVRDLNQYDCLLPESFQVNVILAKLPPSWRDFVTARRHKKEHLTLNELSAA 1235
            +EQ HE+Q   ++L    C+LP+ F    I+AKLPPSWR F TA ++K++  ++  L A+
Sbjct: 421  VEQAHEIQTMAKELELLKCVLPDKFVAGCIIAKLPPSWRSFGTAFKYKRQEYSVEGLIAS 480

Query: 1236 INVEERARAGDSKGK---AQVQAHLVEVKSTGGSGNQKFKNQPKIKLQGKNMKKKKKEDI 1406
            ++VEE+AR  D+  K    Q  A++V        G  K +     K Q KN     +++ 
Sbjct: 481  LDVEEKAREKDAASKGDGGQSSANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDER 540

Query: 1407 VCFVCGVAGHKANHCRNRKG-KGPSPAQHKGLKAEVNVVLDNT 1532
             CFVCG   H A  C  RKG K P+    K      NV + NT
Sbjct: 541  TCFVCGQVRHLARKCPQRKGMKAPAGQTSK----SANVTIGNT 579



 Score =  105 bits (263), Expect(2) = 4e-74
 Identities = 53/105 (50%), Positives = 76/105 (72%)
 Frame = +2

Query: 1559 SLLMGNGAAATVRGIGQVCLKLTSGKTLILRDVLYVPAMTRNLISGSMLCRQGIKLVFES 1738
            ++LMGNG+ A+V G+G V LK TSGK + L++V +VP++ RNL+SGS L R G KLVFES
Sbjct: 613  TVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFES 672

Query: 1739 NKVVLTKFSTFVCKGYDSGGMFRLSILDSNNVNIFNVSHCNKLHD 1873
            NKVV++K   F+ KGY+ GG+FR S+ D  N ++ ++  C  + D
Sbjct: 673  NKVVVSKHGYFIGKGYECGGLFRFSLSDFCNKSVNHI--CGSVDD 715


>gb|ABA93966.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            (japonica cultivar-group)]
          Length = 1212

 Score =  195 bits (495), Expect(2) = 4e-74
 Identities = 102/282 (36%), Positives = 157/282 (55%), Gaps = 4/282 (1%)
 Frame = +3

Query: 696  MASSSGVVKPEVFDGANFKRWQAKTKLWLTDLRLFWVISTPLMFPLETAEMTRWEDANNS 875
            MA  +  ++P+ F G  FKRWQ +  LWLT ++ FWV ++  M  L   +   +++A   
Sbjct: 1    MAGFADALRPDKFTGMLFKRWQIRVTLWLTAMKCFWVSTSKPMGVLNADQQKEFDEATTL 60

Query: 876  ALARLLAVLSNRLFDVYVTFTNAKQLWDELDEKYSEGDNGNESFITAAYLNYKMVEGRSV 1055
             +  +L+VL +RL +VY+  T+ K+LWD L+ ++   D  N+ +I   + +YKM + RSV
Sbjct: 61   FVGCILSVLGDRLVEVYMHMTDTKELWDALNTEFGATDASNDMYIMEQFHDYKMADNRSV 120

Query: 1056 MEQLHELQLHVRDLNQYDCLLPESFQVNVILAKLPPSWRDFVTARRHKKEHLTLNELSAA 1235
            +EQ HE+Q   ++L    C+L + F    I+AKLPPSWR F TA +HK++  ++  L A+
Sbjct: 121  VEQAHEIQTMAKELELLKCVLLDKFVAGCIIAKLPPSWRGFGTALKHKRQEYSVEGLIAS 180

Query: 1236 INVEERARAGDSKGK---AQVQAHLVEVKSTGGSGNQKFKNQPKIKLQGKNMKKKKKEDI 1406
            ++VEE+AR  D+  K    Q  A++V        G  K +     K Q KN     +++ 
Sbjct: 181  LDVEEKAREKDAASKGDGGQSNANVVHKAQNKSKGKYKAQQTTNFKKQKKNNNNPNQDER 240

Query: 1407 VCFVCGVAGHKANHCRNRKG-KGPSPAQHKGLKAEVNVVLDN 1529
             CFVCG  GH A  C  RKG K P+   +K      NV +DN
Sbjct: 241  TCFVCGQPGHLARKCPQRKGMKAPARQTYK----SANVTIDN 278



 Score =  106 bits (264), Expect(2) = 4e-74
 Identities = 53/105 (50%), Positives = 76/105 (72%)
 Frame = +2

Query: 1559 SLLMGNGAAATVRGIGQVCLKLTSGKTLILRDVLYVPAMTRNLISGSMLCRQGIKLVFES 1738
            ++LMGNG+ A+V G+G V LK TSGK + L++V +VP++ RNL+SGS L R G KLVFES
Sbjct: 313  TVLMGNGSHASVHGVGTVDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFES 372

Query: 1739 NKVVLTKFSTFVCKGYDSGGMFRLSILDSNNVNIFNVSHCNKLHD 1873
            NKVV++K   F+ KGY+ GG+FR S+ D  N ++ ++  C  + D
Sbjct: 373  NKVVISKHGYFIGKGYECGGLFRFSLSDFCNKSVNHI--CGSVDD 415