BLASTX 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyem205a24 (1953 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 5,815,196 sequences; 2,006,227,497 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_001047956.1| Os02g0720900 [Oryza sativa (japonica cultiva... 687 0.0 gb|EAZ00649.1| hypothetical protein OsI_021881 [Oryza sativa (in... 589 e-166 dbj|BAD62387.1| putative 41 kD chloroplast nucleoid DNA binding ... 589 e-166 gb|EAZ36752.1| hypothetical protein OsJ_020235 [Oryza sativa (ja... 532 e-149 dbj|BAD12880.1| putative chloroplast nucleoid DNA-binding protei... 510 e-142 >ref|NP_001047956.1| Os02g0720900 [Oryza sativa (japonica cultivar-group)] dbj|BAD12879.1| putative chloroplast nucleoid DNA-binding protein cnd41 [Oryza sativa (japonica cultivar-group)] dbj|BAD12999.1| putative chloroplast nucleoid DNA-binding protein cnd41 [Oryza sativa (japonica cultivar-group)] dbj|BAF09870.1| Os02g0720900 [Oryza sativa (japonica cultivar-group)] gb|EAY87325.1| hypothetical protein OsI_008558 [Oryza sativa (indica cultivar-group)] Length = 458 Score = 687 bits (1774), Expect = 0.0 Identities = 351/432 (81%), Positives = 376/432 (87%), Gaps = 3/432 (0%) Frame = +3 Query: 99 TPIRDITDACSSEVKDFQHLNSSGLHLELHHPRSPCSPAPLPADLPFSAVLTHDDARIAS 278 TPIRDITD CSS++KDFQ+LNS+GLHLELHHPRSPCSPAP+PADLPF+AVLTHDDARI+S Sbjct: 19 TPIRDITDVCSSQIKDFQYLNSTGLHLELHHPRSPCSPAPVPADLPFTAVLTHDDARISS 78 Query: 279 FAARLAKTPSARPTSLDR-ADA--AGSLASVPLSPGKSVGVGNYVTRMGLGTPAKSYVMV 449 AARLAKTPSAR TSLD ADA AGSLASVPLSPG SVGVGNYVTRMGLGTPA YVMV Sbjct: 79 LAARLAKTPSARATSLDADADAGLAGSLASVPLSPGASVGVGNYVTRMGLGTPATQYVMV 138 Query: 450 VDTGSSLTWLQCSPCIVSCHRQAGPVFNPKTXXXXXXXXXXXXQCNDLTSATLNRAACSS 629 VDTGSSLTWLQCSPC+VSCHRQ+GPVFNPK+ QC+DL SATLN +ACSS Sbjct: 139 VDTGSSLTWLQCSPCLVSCHRQSGPVFNPKSSSTYASVGCSAQQCSDLPSATLNPSACSS 198 Query: 630 SNVCIYQASYGDSSFSVGYLSKDTVSFGSKSMPNFYYGCGQDNEELFGRSAGLIGLARNK 809 SNVCIYQASYGDSSFSVGYLSKDTVSFGS S+PNFYYGCGQDNE LFGRSAGLIGLARNK Sbjct: 199 SNVCIYQASYGDSSFSVGYLSKDTVSFGSTSLPNFYYGCGQDNEGLFGRSAGLIGLARNK 258 Query: 810 LSLLYQLAPSLGYSFSYCLPTXXXXXXXXXXXXNPGQYSYTPMVSSSLDDSLYFIKLAGI 989 LSLLYQLAPSLGYSF+YCLP+ NPGQYSYTPMVSSSLDDSLYFIKL+G+ Sbjct: 259 LSLLYQLAPSLGYSFTYCLPSSSSSGYLSLGSYNPGQYSYTPMVSSSLDDSLYFIKLSGM 318 Query: 990 TVAGRXXXXXXXXXXXLPTIIDSGTVITRLPTSVYSALSKAVAGAMKGTPRASAYSILDT 1169 TVAG LPTIIDSGTVITRLPTSVYSALSKAVA AMKGT RASAYSILDT Sbjct: 319 TVAGNPLSVSSSAYSSLPTIIDSGTVITRLPTSVYSALSKAVAAAMKGTSRASAYSILDT 378 Query: 1170 CFKGRASQLRVPAVSLAFAGGAVLKLSARNLLVDVDSSTTCLAFAPARSAAIIGNTQQQT 1349 CFKG+AS++ PAV+++FAGGA LKLSA+NLLVDVD STTCLAFAPARSAAIIGNTQQQT Sbjct: 379 CFKGQASRVSAPAVTMSFAGGAALKLSAQNLLVDVDDSTTCLAFAPARSAAIIGNTQQQT 438 Query: 1350 FSVVYDVKSNRI 1385 FSVVYDVKS+RI Sbjct: 439 FSVVYDVKSSRI 450 >gb|EAZ00649.1| hypothetical protein OsI_021881 [Oryza sativa (indica cultivar-group)] Length = 469 Score = 589 bits (1519), Expect = e-166 Identities = 306/443 (69%), Positives = 339/443 (76%), Gaps = 14/443 (3%) Frame = +3 Query: 99 TPIRDITDACSSEVKDFQHLNSSGLHLELHHPRSPCSPAPLPADLPFSAVLTHDDARIAS 278 TPIRDITD C+S++ DFQHLNSSGLHL LHHP+SPCSPAPLP+DLPFSAV+THDDARIA Sbjct: 19 TPIRDITDVCASQISDFQHLNSSGLHLTLHHPQSPCSPAPLPSDLPFSAVVTHDDARIAH 78 Query: 279 FAARLAKTPSARPTSLD-----RADAAG-------SLASVPLSPGKSVGVGNYVTRMGLG 422 A+RLA P+S R AG S +SVPL+PG SV VGNYVTR+GLG Sbjct: 79 LASRLANNHPTSPSSSSLLHGHRKKKAGGVGGSQASSSSVPLTPGASVAVGNYVTRLGLG 138 Query: 423 TPAKSYVMVVDTGSSLTWLQCSPCIVSCHRQAGPVFNPKTXXXXXXXXXXXXQCNDLTSA 602 TPA SYVMVVDTGSSLTWLQCSPC VSCHRQAGPVF+P+ +C +L +A Sbjct: 139 TPATSYVMVVDTGSSLTWLQCSPCSVSCHRQAGPVFDPRASGTYAAVQCSSSECGELQAA 198 Query: 603 TLNRAACSSSNVCIYQASYGDSSFSVGYLSKDTVSFGSKSMPNFYYGCGQDNEELFGRSA 782 TLN +ACS SNVCIYQASYGDSS+SVGYLSKDTVSFGS S P FYYGCGQDNE LFGRSA Sbjct: 199 TLNPSACSVSNVCIYQASYGDSSYSVGYLSKDTVSFGSGSFPGFYYGCGQDNEGLFGRSA 258 Query: 783 GLIGLARNKLSLLYQLAPSLGYSFSYCLPT-XXXXXXXXXXXXNPGQYSYTPMVSSSLDD 959 GLIGLA+NKLSLLYQLAPSLGY+FSYCLPT NPGQYSYTPM SSSLD Sbjct: 259 GLIGLAKNKLSLLYQLAPSLGYAFSYCLPTSSAAAGYLSIGSYNPGQYSYTPMASSSLDA 318 Query: 960 SLYFIKLAGITVAGRXXXXXXXXXXXLPTIIDSGTVITRLPTSVYSALSKAVAGAMKG-T 1136 SLYF+ L+GI+VAG LPTIIDSGTVITRLP +VY+ALS+AVA A+ G Sbjct: 319 SLYFVTLSGISVAGAPLAVPPSEYRSLPTIIDSGTVITRLPPNVYTALSRAVAAAIAGAA 378 Query: 1137 PRASAYSILDTCFKGRASQLRVPAVSLAFAGGAVLKLSARNLLVDVDSSTTCLAFAPARS 1316 PRA YSILDTCF+G A+ LRVP V +AFAGGA L LS N+L+DVD STTCLAFAP Sbjct: 379 PRAPTYSILDTCFRGSAAGLRVPRVDMAFAGGATLALSPGNVLIDVDDSTTCLAFAPTGG 438 Query: 1317 AAIIGNTQQQTFSVVYDVKSNRI 1385 AIIGNTQQQTFSVVYDV +RI Sbjct: 439 TAIIGNTQQQTFSVVYDVAQSRI 461 >dbj|BAD62387.1| putative 41 kD chloroplast nucleoid DNA binding protein [Oryza sativa (japonica cultivar-group)] Length = 469 Score = 589 bits (1518), Expect = e-166 Identities = 306/443 (69%), Positives = 338/443 (76%), Gaps = 14/443 (3%) Frame = +3 Query: 99 TPIRDITDACSSEVKDFQHLNSSGLHLELHHPRSPCSPAPLPADLPFSAVLTHDDARIAS 278 TPIRDITD C+S++ DFQHLNSSGLHL LHHP+SPCSPAPLP+DLPFSAV+THDDARIA Sbjct: 19 TPIRDITDVCASQISDFQHLNSSGLHLTLHHPQSPCSPAPLPSDLPFSAVVTHDDARIAH 78 Query: 279 FAARLAKTPSARPTSLD-----RADAAG-------SLASVPLSPGKSVGVGNYVTRMGLG 422 A+RLA P+S R AG S +SVPL+PG SV VGNYVTR+GLG Sbjct: 79 LASRLANNHPTSPSSSSLLHGHRKKKAGGVGGSQASSSSVPLTPGASVAVGNYVTRLGLG 138 Query: 423 TPAKSYVMVVDTGSSLTWLQCSPCIVSCHRQAGPVFNPKTXXXXXXXXXXXXQCNDLTSA 602 TPA SYVMVVDTGSSLTWLQCSPC VSCHRQAGPVF+P+ +C +L +A Sbjct: 139 TPATSYVMVVDTGSSLTWLQCSPCSVSCHRQAGPVFDPRASGTYAAVQCSSSECGELQAA 198 Query: 603 TLNRAACSSSNVCIYQASYGDSSFSVGYLSKDTVSFGSKSMPNFYYGCGQDNEELFGRSA 782 TLN +ACS SNVCIYQASYGDSS+SVGYLSKDTVSFGS S P FYYGCGQDNE LFGRSA Sbjct: 199 TLNPSACSVSNVCIYQASYGDSSYSVGYLSKDTVSFGSGSFPGFYYGCGQDNEGLFGRSA 258 Query: 783 GLIGLARNKLSLLYQLAPSLGYSFSYCLPT-XXXXXXXXXXXXNPGQYSYTPMVSSSLDD 959 GLIGLA+NKLSLLYQLAPSLGY+FSYCLPT NPGQYSYTPM SSSLD Sbjct: 259 GLIGLAKNKLSLLYQLAPSLGYAFSYCLPTSSAAAGYLSIGSYNPGQYSYTPMASSSLDA 318 Query: 960 SLYFIKLAGITVAGRXXXXXXXXXXXLPTIIDSGTVITRLPTSVYSALSKAVAGAM-KGT 1136 SLYF+ L+GI+VAG LPTIIDSGTVITRLP +VY+ALS+AVA AM Sbjct: 319 SLYFVTLSGISVAGAPLAVPPSEYRSLPTIIDSGTVITRLPPNVYTALSRAVAAAMASAA 378 Query: 1137 PRASAYSILDTCFKGRASQLRVPAVSLAFAGGAVLKLSARNLLVDVDSSTTCLAFAPARS 1316 PRA YSILDTCF+G A+ LRVP V +AFAGGA L LS N+L+DVD STTCLAFAP Sbjct: 379 PRAPTYSILDTCFRGSAAGLRVPRVDMAFAGGATLALSPGNVLIDVDDSTTCLAFAPTGG 438 Query: 1317 AAIIGNTQQQTFSVVYDVKSNRI 1385 AIIGNTQQQTFSVVYDV +RI Sbjct: 439 TAIIGNTQQQTFSVVYDVAQSRI 461 >gb|EAZ36752.1| hypothetical protein OsJ_020235 [Oryza sativa (japonica cultivar-group)] Length = 434 Score = 532 bits (1371), Expect = e-149 Identities = 283/442 (64%), Positives = 313/442 (70%), Gaps = 13/442 (2%) Frame = +3 Query: 99 TPIRDITDACSSEVKDFQHLNSSGLHLELHHPRSPCSPAPLPADLPFSAVLTHDDARIAS 278 TPIRDITD C+S++ DFQHLNSSGLHL LHHP+SPCSPAPLP+DLPFSAV+THDDARIA Sbjct: 19 TPIRDITDVCASQISDFQHLNSSGLHLTLHHPQSPCSPAPLPSDLPFSAVVTHDDARIAH 78 Query: 279 FAARLAKTPSARPTSLD-----RADAAG-------SLASVPLSPGKSVGVGNYVTRMGLG 422 A+RLA P+S R AG S +SVPL+PG SV VGNYVTR+GLG Sbjct: 79 LASRLANNHPTSPSSSSLLHGHRKKKAGGVGGSQASSSSVPLTPGASVAVGNYVTRLGLG 138 Query: 423 TPAKSYVMVVDTGSSLTWLQCSPCIVSCHRQAGPVFNPKTXXXXXXXXXXXXQCNDLTSA 602 TPA SYVMVVDTGSSLTWLQCSPC VSCHRQAGPVF+P+ +C +L +A Sbjct: 139 TPATSYVMVVDTGSSLTWLQCSPCSVSCHRQAGPVFDPRASGTYAAVQCSSSECGELQAA 198 Query: 603 TLNRAACSSSNVCIYQASYGDSSFSVGYLSKDTVSFGSKSMPNFYYGCGQDNEELFGRSA 782 TLN +ACS SNVCIYQASYGDSS+SVGYLSKDTVSFGS S P FYYGCGQDNE LFGRSA Sbjct: 199 TLNPSACSVSNVCIYQASYGDSSYSVGYLSKDTVSFGSGSFPGFYYGCGQDNEGLFGRSA 258 Query: 783 GLIGLARNKLSLLYQLAPSLGYSFSYCLPT-XXXXXXXXXXXXNPGQYSYTPMVSSSLDD 959 GLIGLA+NKLSLLYQLAPSLGY+FSYCLPT NPGQYSYTPM SSSLD Sbjct: 259 GLIGLAKNKLSLLYQLAPSLGYAFSYCLPTSSAAAGYLSIGSYNPGQYSYTPMASSSLDA 318 Query: 960 SLYFIKLAGITVAGRXXXXXXXXXXXLPTIIDSGTVITRLPTSVYSALSKAVAGAMKGTP 1139 SLYF+ L+GI+VAG +P S P Sbjct: 319 SLYFVTLSGISVAGAP---------------------LAVPPS-------------DAAP 344 Query: 1140 RASAYSILDTCFKGRASQLRVPAVSLAFAGGAVLKLSARNLLVDVDSSTTCLAFAPARSA 1319 RA YSILDTCF+G A+ LRVP V +AFAGGA L LS N+L+DVD STTCLAFAP Sbjct: 345 RAPTYSILDTCFRGSAAGLRVPRVDMAFAGGATLALSPGNVLIDVDDSTTCLAFAPTGGT 404 Query: 1320 AIIGNTQQQTFSVVYDVKSNRI 1385 AIIGNTQQQTFSVVYDV +RI Sbjct: 405 AIIGNTQQQTFSVVYDVAQSRI 426 >dbj|BAD12880.1| putative chloroplast nucleoid DNA-binding protein cnd41 [Oryza sativa (japonica cultivar-group)] dbj|BAD13000.1| putative chloroplast nucleoid DNA-binding protein cnd41 [Oryza sativa (japonica cultivar-group)] Length = 333 Score = 510 bits (1314), Expect = e-142 Identities = 259/325 (79%), Positives = 277/325 (85%) Frame = +3 Query: 411 MGLGTPAKSYVMVVDTGSSLTWLQCSPCIVSCHRQAGPVFNPKTXXXXXXXXXXXXQCND 590 MGLGTPA YVMVVDTGSSLTWLQCSPC+VSCHRQ+GPVFNPK+ QC+D Sbjct: 1 MGLGTPATQYVMVVDTGSSLTWLQCSPCLVSCHRQSGPVFNPKSSSTYASVGCSAQQCSD 60 Query: 591 LTSATLNRAACSSSNVCIYQASYGDSSFSVGYLSKDTVSFGSKSMPNFYYGCGQDNEELF 770 L SATLN +ACSSSNVCIYQASYGDSSFSVGYLSKDTVSFGS S+PNFYYGCGQDNE LF Sbjct: 61 LPSATLNPSACSSSNVCIYQASYGDSSFSVGYLSKDTVSFGSTSLPNFYYGCGQDNEGLF 120 Query: 771 GRSAGLIGLARNKLSLLYQLAPSLGYSFSYCLPTXXXXXXXXXXXXNPGQYSYTPMVSSS 950 GRSAGLIGLARNKLSLLYQLAPSLGYSF+YCLP+ NPGQYSYTPMVSSS Sbjct: 121 GRSAGLIGLARNKLSLLYQLAPSLGYSFTYCLPSSSSSGYLSLGSYNPGQYSYTPMVSSS 180 Query: 951 LDDSLYFIKLAGITVAGRXXXXXXXXXXXLPTIIDSGTVITRLPTSVYSALSKAVAGAMK 1130 LDDSLYFIKL+G+TVAG LPTIIDSGTVITRLPTSVYSALSKAVA AMK Sbjct: 181 LDDSLYFIKLSGMTVAGNPLSVSSSAYSSLPTIIDSGTVITRLPTSVYSALSKAVAAAMK 240 Query: 1131 GTPRASAYSILDTCFKGRASQLRVPAVSLAFAGGAVLKLSARNLLVDVDSSTTCLAFAPA 1310 GT RASAYSILDTCFKG+AS++ PAV+++FAGGA LKLSA+NLLVDVD STTCLAFAPA Sbjct: 241 GTSRASAYSILDTCFKGQASRVSAPAVTMSFAGGAALKLSAQNLLVDVDDSTTCLAFAPA 300 Query: 1311 RSAAIIGNTQQQTFSVVYDVKSNRI 1385 RSAAIIGNTQQQTFSVVYDVKS+RI Sbjct: 301 RSAAIIGNTQQQTFSVVYDVKSSRI 325