BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyem116h03
         (1163 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001059975.1| Os07g0558400 [Oryza sativa (japonica cultiva...   523   e-146
ref|NP_001105502.1| photosystem II subunit29 [Zea mays] >gi|2326...   514   e-144
prf||1908421A light-harvesting complex IIa protein;                   498   e-139
gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [V...   486   e-135
ref|NP_195773.1| chlorophyll A-B binding protein CP29 (LHCB4) [A...   485   e-135

>ref|NP_001059975.1| Os07g0558400 [Oryza sativa (japonica cultivar-group)]
 gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa]
 dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa (japonica
           cultivar-group)]
 dbj|BAF21889.1| Os07g0558400 [Oryza sativa (japonica cultivar-group)]
 gb|EAZ04322.1| hypothetical protein OsI_025554 [Oryza sativa (indica
           cultivar-group)]
          Length = 290

 Score =  523 bits (1346), Expect = e-146
 Identities = 262/287 (91%), Positives = 270/287 (94%), Gaps = 2/287 (0%)
 Frame = +1

Query: 70  MASSVAAAASTFLGTRLVDRAPQNGRIVALLGFGRKKAAPKKKAARTS--TSDRPLWYPG 243
           MASSVAAAASTFLGTRL D APQ+GRIVA  GFG  K A  KKAAR S  T+DRPLW+PG
Sbjct: 1   MASSVAAAASTFLGTRLADPAPQSGRIVARFGFGGGKKAAAKKAARPSAPTTDRPLWFPG 60

Query: 244 AVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVSGDIIGTRFESGEVKS 423
           AVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKN +G+IIGTRFE+GEVKS
Sbjct: 61  AVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTRFETGEVKS 120

Query: 424 TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELEDGSSYLG 603
           TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVEL DGSSYLG
Sbjct: 121 TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLG 180

Query: 604 QPLPFSISTLILIEVLLIGYIEFQRNAELDPEQRLYPGGSYFDPLGLASDPEKKERLQLA 783
           QPLPFSISTLI IEVL+IGYIEFQRNAELDPE+RLYPGGSYFDPLGLASDPEKKERLQLA
Sbjct: 181 QPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKERLQLA 240

Query: 784 EIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTILDTFS 924
           EIKHARLAMV FLGFAVQAAATGKGPLNNWATHLSDPLHTTI DTFS
Sbjct: 241 EIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTFS 287


>ref|NP_001105502.1| photosystem II subunit29 [Zea mays]
 emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
          Length = 291

 Score =  514 bits (1323), Expect = e-144
 Identities = 256/287 (89%), Positives = 266/287 (92%), Gaps = 3/287 (1%)
 Frame = +1

Query: 70  MASSVAAAASTFLGTRLVDRAPQNGRIVALLGFG---RKKAAPKKKAARTSTSDRPLWYP 240
           MASSVAAAASTFLGTRL D APQNGRIVA  GFG   + K APKK A  +++SDRPLW+P
Sbjct: 1   MASSVAAAASTFLGTRLADPAPQNGRIVARFGFGLGGKAKPAPKKVAKTSTSSDRPLWFP 60

Query: 241 GAVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVSGDIIGTRFESGEVK 420
           GAVAPDYLDGSLVGDYGFDPFGLGKP EYLQFELDSLDQNLAKN +G IIGTRFES EVK
Sbjct: 61  GAVAPDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQNLAKNEAGGIIGTRFESSEVK 120

Query: 421 STPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELEDGSSYL 600
           STP QPY+EVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVEL DGSSYL
Sbjct: 121 STPLQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYL 180

Query: 601 GQPLPFSISTLILIEVLLIGYIEFQRNAELDPEQRLYPGGSYFDPLGLASDPEKKERLQL 780
           GQPLPFSISTLI IEVL+IGYIEFQRNAELDPE+RLYPGGSYFDPLGLA+DPEKKERLQL
Sbjct: 181 GQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLAADPEKKERLQL 240

Query: 781 AEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTILDTF 921
           AEIKHARLAMV FLGFAVQAAATGKGPLNNWATHLSDPLHTTI DTF
Sbjct: 241 AEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTF 287


>prf||1908421A light-harvesting complex IIa protein;
          Length = 286

 Score =  498 bits (1283), Expect = e-139
 Identities = 244/284 (85%), Positives = 263/284 (92%)
 Frame = +1

Query: 70  MASSVAAAASTFLGTRLVDRAPQNGRIVALLGFGRKKAAPKKKAARTSTSDRPLWYPGAV 249
           MASSVAAAASTFLGTRL D  PQNGRIVA  GFG+KKA PKK  A   T+DRPLW+PGA 
Sbjct: 1   MASSVAAAASTFLGTRLADPRPQNGRIVARFGFGKKKAPPKKAKA-PPTTDRPLWFPGAQ 59

Query: 250 APDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVSGDIIGTRFESGEVKSTP 429
           AP+YLDG+LVGDYGFDPFGLGKPAEYLQ+++DSLDQNLA+N++G+IIGTRFE  +VKSTP
Sbjct: 60  APEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGEIIGTRFEDADVKSTP 119

Query: 430 FQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELEDGSSYLGQP 609
           FQPY EVFGLQRFRECELIHGRWAMLATLGAL+VEWLTGVTWQDAGKVEL DGSSYLGQP
Sbjct: 120 FQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVDGSSYLGQP 179

Query: 610 LPFSISTLILIEVLLIGYIEFQRNAELDPEQRLYPGGSYFDPLGLASDPEKKERLQLAEI 789
           LPF+I+TLI IEVL+IGYIEFQRNAELDPE+RLYPGGSYFDPLGLA+DPEKKE LQLAEI
Sbjct: 180 LPFTITTLIWIEVLVIGYIEFQRNAELDPERRLYPGGSYFDPLGLAADPEKKETLQLAEI 239

Query: 790 KHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTILDTF 921
           KHARLAMV FLGFAVQAAATGKG LNNWATHLSDPLHTTI DTF
Sbjct: 240 KHARLAMVAFLGFAVQAAATGKGRLNNWATHLSDPLHTTIFDTF 283


>gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
          Length = 290

 Score =  486 bits (1250), Expect = e-135
 Identities = 239/286 (83%), Positives = 259/286 (90%)
 Frame = +1

Query: 67  AMASSVAAAASTFLGTRLVDRAPQNGRIVALLGFGRKKAAPKKKAARTSTSDRPLWYPGA 246
           A A++ AAA S+F+GTRL+D    +GRI A  GFG KK A  KK ++  ++DRPLWYPGA
Sbjct: 2   ATATATAAATSSFMGTRLLDAHSGSGRIQARFGFGSKKKAAPKKVSKGPSTDRPLWYPGA 61

Query: 247 VAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVSGDIIGTRFESGEVKST 426
            AP++LDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKN +G IIGTR E  +VKST
Sbjct: 62  KAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIGTRTEVADVKST 121

Query: 427 PFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELEDGSSYLGQ 606
           PFQPY+EVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVEL +GSSYLGQ
Sbjct: 122 PFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQ 181

Query: 607 PLPFSISTLILIEVLLIGYIEFQRNAELDPEQRLYPGGSYFDPLGLASDPEKKERLQLAE 786
           PLPFSI+TLI IEVL+IGYIEFQRNAELDPE+RLYPGGSYFDPLGLASDPEKK  LQLAE
Sbjct: 182 PLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAE 241

Query: 787 IKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTILDTFS 924
           IKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTI+DTFS
Sbjct: 242 IKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 287


>ref|NP_195773.1| chlorophyll A-B binding protein CP29 (LHCB4) [Arabidopsis thaliana]
 sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1, chloroplast precursor
           (LHCII protein 4.1) (LHCB4.1)
 emb|CAA50712.1| CP29 [Arabidopsis thaliana]
 emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
 gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
 gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
 gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
 gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
 gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
 dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
          Length = 290

 Score =  485 bits (1249), Expect = e-135
 Identities = 234/287 (81%), Positives = 261/287 (90%), Gaps = 1/287 (0%)
 Frame = +1

Query: 67  AMASSVAAAASTFLGTRLVDRA-PQNGRIVALLGFGRKKAAPKKKAARTSTSDRPLWYPG 243
           A  S+ AAAAS+ +GTR+     P +GR  A+ GFG+KKAAPKK A +T T+DRPLWYPG
Sbjct: 2   AATSAAAAAASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPG 61

Query: 244 AVAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVSGDIIGTRFESGEVKS 423
           A++PD+LDGSLVGDYGFDPFGLGKPAEYLQF++DSLDQNLAKN++GD+IGTR E+ + KS
Sbjct: 62  AISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKS 121

Query: 424 TPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELEDGSSYLG 603
           TPFQPY+EVFG+QRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVEL DGSSYLG
Sbjct: 122 TPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLG 181

Query: 604 QPLPFSISTLILIEVLLIGYIEFQRNAELDPEQRLYPGGSYFDPLGLASDPEKKERLQLA 783
           QPLPFSISTLI IEVL+IGYIEFQRNAELD E+RLYPGG +FDPLGLA+DPEK  +LQLA
Sbjct: 182 QPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLA 241

Query: 784 EIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTILDTFS 924
           EIKHARLAMV FLGFAVQAAATGKGPLNNWATHLSDPLHTTI+DTFS
Sbjct: 242 EIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 288