BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bphyem114e23
         (933 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]                       121   7e-26
gb|AAP53927.1| retrotransposon protein, putative, Ty1-copia subc...   119   3e-25
gb|ABA93952.1| retrotransposon protein, putative, Ty1-copia subc...   119   4e-25
gb|AAT93941.1| putative polyprotein [Oryza sativa (japonica cult...   118   5e-25
gb|ABA93790.1| retrotransposon protein, putative, Ty1-copia subc...   118   5e-25

>gb|AAM22635.1|AF434192_2 Gag and Pol [Zea mays]
          Length = 1264

 Score =  121 bits (303), Expect = 7e-26
 Identities = 60/96 (62%), Positives = 74/96 (77%)
 Frame = +2

Query: 644 VDLKLTS*KIITLKNVQHVPSIKKNMISSSLLCRDGYKLVIESNKLVIYKFGLFIRKDYE 823
           VDLK TS KI+ LKNV HVPSI KN++S +LLCRDG+K+V+ESNKLV+ K G FI K Y+
Sbjct: 306 VDLKFTSGKIVQLKNVHHVPSIHKNLVSGTLLCRDGFKVVLESNKLVVSKSGQFIGKGYD 365

Query: 824 CGGLFRTSLLDSTNKFVNNTFGAFNINKEAAVWHSR 931
           CGGLFR SLLD  NK VN+     N++  A++WHSR
Sbjct: 366 CGGLFRFSLLDFNNKSVNHI--CANVDDLASIWHSR 399


>gb|AAP53927.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           (japonica cultivar-group)]
          Length = 1297

 Score =  119 bits (298), Expect = 3e-25
 Identities = 62/96 (64%), Positives = 72/96 (75%)
 Frame = +2

Query: 644 VDLKLTS*KIITLKNVQHVPSIKKNMISSSLLCRDGYKLVIESNKLVIYKFGLFIRKDYE 823
           VDLK TS KI+ LKNVQHVPSI KN++S S L RDG+KLV ESNK+V+ K G FI K YE
Sbjct: 344 VDLKFTSGKIVQLKNVQHVPSIDKNLVSGSRLTRDGFKLVFESNKVVVSKHGYFIGKGYE 403

Query: 824 CGGLFRTSLLDSTNKFVNNTFGAFNINKEAAVWHSR 931
           CGGLFR SL D  NK VN+  G  +++ EA VWHSR
Sbjct: 404 CGGLFRFSLSDFCNKSVNHICG--SVDDEANVWHSR 437


>gb|ABA93952.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           (japonica cultivar-group)]
          Length = 1336

 Score =  119 bits (297), Expect = 4e-25
 Identities = 61/96 (63%), Positives = 73/96 (76%)
 Frame = +2

Query: 644 VDLKLTS*KIITLKNVQHVPSIKKNMISSSLLCRDGYKLVIESNKLVIYKFGLFIRKDYE 823
           VDLK TS KI+ LKNVQHVPSI +N++S S L RDG+KLV +SNK+V+ K G FI K YE
Sbjct: 344 VDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFKSNKVVVSKHGYFIGKGYE 403

Query: 824 CGGLFRTSLLDSTNKFVNNTFGAFNINKEAAVWHSR 931
           CGGLFR SL D  NK VN+ FG  +++ EA VWHSR
Sbjct: 404 CGGLFRFSLSDFCNKSVNHIFG--SMDDEANVWHSR 437


>gb|AAT93941.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1433

 Score =  118 bits (296), Expect = 5e-25
 Identities = 61/96 (63%), Positives = 72/96 (75%)
 Frame = +2

Query: 644 VDLKLTS*KIITLKNVQHVPSIKKNMISSSLLCRDGYKLVIESNKLVIYKFGLFIRKDYE 823
           VDLK TS KI+ LKNVQHVPSI +N++S S L RDG+KLV ESNK+V+ K G FI K YE
Sbjct: 344 VDLKFTSGKIVQLKNVQHVPSIDRNLVSGSRLTRDGFKLVFESNKVVVSKHGYFISKGYE 403

Query: 824 CGGLFRTSLLDSTNKFVNNTFGAFNINKEAAVWHSR 931
           CGGLFR SL D  NK VN+  G  +++ EA VWHSR
Sbjct: 404 CGGLFRFSLSDFCNKSVNHICG--SVDDEANVWHSR 437


>gb|ABA93790.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           (japonica cultivar-group)]
          Length = 1370

 Score =  118 bits (296), Expect = 5e-25
 Identities = 60/96 (62%), Positives = 72/96 (75%)
 Frame = +2

Query: 644 VDLKLTS*KIITLKNVQHVPSIKKNMISSSLLCRDGYKLVIESNKLVIYKFGLFIRKDYE 823
           VDLK TS KI+ LKNVQHVPSIKKN++S SLLCRDG++LV ESNK ++ K+G FI K Y+
Sbjct: 412 VDLKFTSRKIVQLKNVQHVPSIKKNLVSGSLLCRDGFRLVFESNKCIVSKYGTFIAKGYD 471

Query: 824 CGGLFRTSLLDSTNKFVNNTFGAFNINKEAAVWHSR 931
            GGLFR SL D  NK VN+     N + E+ VWHSR
Sbjct: 472 SGGLFRFSLDDMCNKVVNH---VSNDDDESNVWHSR 504