BLASTX 2.2.17 Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bphyem103j14 (1454 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 5,815,196 sequences; 2,006,227,497 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_001051309.1| Os03g0754900 [Oryza sativa (japonica cultiva... 701 0.0 gb|AAG45490.1| 36I5.2 [Oryza sativa (japonica cultivar-group)] >... 697 0.0 gb|AAL74184.1|AF459639_2 putative cleavage stimulation factor su... 689 0.0 gb|AAG49000.1| putative cleavage stimulation factor subunit 1 [H... 683 0.0 gb|AAM47578.1| putative cleavage stimulation factor subunit 1 [S... 671 0.0 >ref|NP_001051309.1| Os03g0754900 [Oryza sativa (japonica cultivar-group)] dbj|BAF13223.1| Os03g0754900 [Oryza sativa (japonica cultivar-group)] Length = 470 Score = 701 bits (1809), Expect = 0.0 Identities = 350/440 (79%), Positives = 374/440 (85%), Gaps = 5/440 (1%) Frame = +1 Query: 106 ESEMDAAVQEAKLLRQVNALIVAHLRDQNLTQXXXXXXXXTMTXXXXXXXXXXXX---NN 276 E EMDAAVQEAKLLRQVNALIVAHLRD NLTQ TMT N Sbjct: 34 EGEMDAAVQEAKLLRQVNALIVAHLRDHNLTQAAAAVAAATMTPLAPPEPDGDDSVPANQ 93 Query: 277 LLRLVAKGLXXXXXXXXXXXXXXXXFDPAVA--GYGGLMPSLGANAVNLGMQDVRGSSKS 450 LLRLVAKGL FD A A GYGGL+P LG NAV+ QDV+GSSKS Sbjct: 94 LLRLVAKGLAVEREETGRGGGA---FDSAAAAAGYGGLLPPLGTNAVDFSTQDVKGSSKS 150 Query: 451 FPKHETRHVSDHKNVARCAKFSPDGRYFATGSGDTSIKFFEVAKIKQMMLGDSKEGPVRP 630 FPKHE RHVSDHKNV RCAKFSPDG+YFA+GSGDTSIKFFEVAKIKQMMLGDSK+GPVRP Sbjct: 151 FPKHEARHVSDHKNVVRCAKFSPDGKYFASGSGDTSIKFFEVAKIKQMMLGDSKDGPVRP 210 Query: 631 VIRTFYDHMQPVNDLDFHPVNPILVSAAKDNTIKFFDFSKTVARKAFRVIQDTHNVRSVC 810 VIRTFYDH QP+NDLDFHP +PIL+SAAKDNTI+FFDFSKTVARKAFRVIQDTHNVRSVC Sbjct: 211 VIRTFYDHTQPINDLDFHPESPILISAAKDNTIRFFDFSKTVARKAFRVIQDTHNVRSVC 270 Query: 811 FHPCGDYLLAGTDHPVAHLYDVNTFSCYLSANPQDSSAAINQVCYSGTGSLYVTASKDGS 990 FHPCGDYLLAGTDHPVAHLYD+NTF+CYLSAN DS+AAINQV YS TGSLYVTASKDGS Sbjct: 271 FHPCGDYLLAGTDHPVAHLYDINTFTCYLSANSHDSNAAINQVRYSSTGSLYVTASKDGS 330 Query: 991 LRIWDGVSAECVRPIIGAHGSAEATSAIFTKDERYILSCGKDSSIKLWEVGTGRLVKQYL 1170 LRIWDG+SAECVRPIIGAH SAE TSAIFTKDERY+LSCGKDS IKLWEVG+GRLVKQY+ Sbjct: 331 LRIWDGISAECVRPIIGAHASAEVTSAIFTKDERYVLSCGKDSCIKLWEVGSGRLVKQYV 390 Query: 1171 GAVHRQFRCQAVFNESEEFVLSTDEQNNEVVIWDALTAEKVARLPTGHTGAPRSLEHSPV 1350 GAVHRQFRCQAVFN++EEFV+STDEQN+EVV+WDALTAE VARLP+GHTGAPR L HSP Sbjct: 391 GAVHRQFRCQAVFNQTEEFVVSTDEQNSEVVVWDALTAENVARLPSGHTGAPRWLGHSPA 450 Query: 1351 EPAFVTCGNDRSIRFWKQTV 1410 EPAFVTCGNDRS+RFWKQTV Sbjct: 451 EPAFVTCGNDRSVRFWKQTV 470 >gb|AAG45490.1| 36I5.2 [Oryza sativa (japonica cultivar-group)] gb|AAR01689.1| putative cleavage stimulation factor (having alternative splicing products) [Oryza sativa (japonica cultivar-group)] gb|ABF98938.1| Cleavage stimulation factor, 50 kDa subunit, putative, expressed [Oryza sativa (japonica cultivar-group)] Length = 434 Score = 697 bits (1799), Expect = 0.0 Identities = 348/437 (79%), Positives = 372/437 (85%), Gaps = 5/437 (1%) Frame = +1 Query: 115 MDAAVQEAKLLRQVNALIVAHLRDQNLTQXXXXXXXXTMTXXXXXXXXXXXX---NNLLR 285 MDAAVQEAKLLRQVNALIVAHLRD NLTQ TMT N LLR Sbjct: 1 MDAAVQEAKLLRQVNALIVAHLRDHNLTQAAAAVAAATMTPLAPPEPDGDDSVPANQLLR 60 Query: 286 LVAKGLXXXXXXXXXXXXXXXXFDPAVA--GYGGLMPSLGANAVNLGMQDVRGSSKSFPK 459 LVAKGL FD A A GYGGL+P LG NAV+ QDV+GSSKSFPK Sbjct: 61 LVAKGLAVEREETGRGGGA---FDSAAAAAGYGGLLPPLGTNAVDFSTQDVKGSSKSFPK 117 Query: 460 HETRHVSDHKNVARCAKFSPDGRYFATGSGDTSIKFFEVAKIKQMMLGDSKEGPVRPVIR 639 HE RHVSDHKNV RCAKFSPDG+YFA+GSGDTSIKFFEVAKIKQMMLGDSK+GPVRPVIR Sbjct: 118 HEARHVSDHKNVVRCAKFSPDGKYFASGSGDTSIKFFEVAKIKQMMLGDSKDGPVRPVIR 177 Query: 640 TFYDHMQPVNDLDFHPVNPILVSAAKDNTIKFFDFSKTVARKAFRVIQDTHNVRSVCFHP 819 TFYDH QP+NDLDFHP +PIL+SAAKDNTI+FFDFSKTVARKAFRVIQDTHNVRSVCFHP Sbjct: 178 TFYDHTQPINDLDFHPESPILISAAKDNTIRFFDFSKTVARKAFRVIQDTHNVRSVCFHP 237 Query: 820 CGDYLLAGTDHPVAHLYDVNTFSCYLSANPQDSSAAINQVCYSGTGSLYVTASKDGSLRI 999 CGDYLLAGTDHPVAHLYD+NTF+CYLSAN DS+AAINQV YS TGSLYVTASKDGSLRI Sbjct: 238 CGDYLLAGTDHPVAHLYDINTFTCYLSANSHDSNAAINQVRYSSTGSLYVTASKDGSLRI 297 Query: 1000 WDGVSAECVRPIIGAHGSAEATSAIFTKDERYILSCGKDSSIKLWEVGTGRLVKQYLGAV 1179 WDG+SAECVRPIIGAH SAE TSAIFTKDERY+LSCGKDS IKLWEVG+GRLVKQY+GAV Sbjct: 298 WDGISAECVRPIIGAHASAEVTSAIFTKDERYVLSCGKDSCIKLWEVGSGRLVKQYVGAV 357 Query: 1180 HRQFRCQAVFNESEEFVLSTDEQNNEVVIWDALTAEKVARLPTGHTGAPRSLEHSPVEPA 1359 HRQFRCQAVFN++EEFV+STDEQN+EVV+WDALTAE VARLP+GHTGAPR L HSP EPA Sbjct: 358 HRQFRCQAVFNQTEEFVVSTDEQNSEVVVWDALTAENVARLPSGHTGAPRWLGHSPAEPA 417 Query: 1360 FVTCGNDRSIRFWKQTV 1410 FVTCGNDRS+RFWKQTV Sbjct: 418 FVTCGNDRSVRFWKQTV 434 >gb|AAL74184.1|AF459639_2 putative cleavage stimulation factor subunit 1 [Triticum monococcum] Length = 424 Score = 689 bits (1777), Expect = 0.0 Identities = 343/429 (79%), Positives = 368/429 (85%) Frame = +1 Query: 115 MDAAVQEAKLLRQVNALIVAHLRDQNLTQXXXXXXXXTMTXXXXXXXXXXXXNNLLRLVA 294 MDAAVQEAKLLRQVNALIVAHLRDQNLTQ TMT N+LLRLVA Sbjct: 1 MDAAVQEAKLLRQVNALIVAHLRDQNLTQAAAAVAAATMTPKADASVP----NHLLRLVA 56 Query: 295 KGLXXXXXXXXXXXXXXXXFDPAVAGYGGLMPSLGANAVNLGMQDVRGSSKSFPKHETRH 474 KGL FD AG GGL LG NAV+ +Q+VRG SK+FPKHETRH Sbjct: 57 KGLAAEREEAARGGGAPAAFDSG-AGGGGLARPLGTNAVDFSVQNVRGPSKTFPKHETRH 115 Query: 475 VSDHKNVARCAKFSPDGRYFATGSGDTSIKFFEVAKIKQMMLGDSKEGPVRPVIRTFYDH 654 +SDHKNVARCAKFSPDG+YFATGSGDTSIKFFEV+KIKQ MLGDSKEG RPV+RTFYDH Sbjct: 116 ISDHKNVARCAKFSPDGKYFATGSGDTSIKFFEVSKIKQTMLGDSKEGSGRPVVRTFYDH 175 Query: 655 MQPVNDLDFHPVNPILVSAAKDNTIKFFDFSKTVARKAFRVIQDTHNVRSVCFHPCGDYL 834 +QP+NDLDFHP++PIL+S AKDNTIKFFDFSKT ARKAFRVIQDTHNVRSVCFHPCGDY+ Sbjct: 176 VQPINDLDFHPISPILISGAKDNTIKFFDFSKTAARKAFRVIQDTHNVRSVCFHPCGDYI 235 Query: 835 LAGTDHPVAHLYDVNTFSCYLSANPQDSSAAINQVCYSGTGSLYVTASKDGSLRIWDGVS 1014 LAGTDHPVAHLYDVNTF+C+LSANPQDSSAAINQV YSGTGS+YVTASKDGSLRIWDGVS Sbjct: 236 LAGTDHPVAHLYDVNTFTCFLSANPQDSSAAINQVRYSGTGSMYVTASKDGSLRIWDGVS 295 Query: 1015 AECVRPIIGAHGSAEATSAIFTKDERYILSCGKDSSIKLWEVGTGRLVKQYLGAVHRQFR 1194 AEC+RPIIGAHGS EATSAIFTKDERYILS GKDS IKLWEVGTGRLVKQY G V+ QFR Sbjct: 296 AECIRPIIGAHGSVEATSAIFTKDERYILSSGKDSCIKLWEVGTGRLVKQYPGGVNTQFR 355 Query: 1195 CQAVFNESEEFVLSTDEQNNEVVIWDALTAEKVARLPTGHTGAPRSLEHSPVEPAFVTCG 1374 CQAVFNE+EEFVLSTDEQNNEVVIWDALT+E+VARLP+GHTGAPR LEHSPVEP FVTCG Sbjct: 356 CQAVFNETEEFVLSTDEQNNEVVIWDALTSERVARLPSGHTGAPRWLEHSPVEPVFVTCG 415 Query: 1375 NDRSIRFWK 1401 NDRS+RFWK Sbjct: 416 NDRSVRFWK 424 >gb|AAG49000.1| putative cleavage stimulation factor subunit 1 [Hordeum vulgare subsp. vulgare] Length = 423 Score = 683 bits (1763), Expect = 0.0 Identities = 340/429 (79%), Positives = 369/429 (86%) Frame = +1 Query: 115 MDAAVQEAKLLRQVNALIVAHLRDQNLTQXXXXXXXXTMTXXXXXXXXXXXXNNLLRLVA 294 MDAAVQEAKLLRQVNALIVAHLRDQNLTQ TMT N+LLRLVA Sbjct: 1 MDAAVQEAKLLRQVNALIVAHLRDQNLTQAAAAVAAATMTPKADASLP----NHLLRLVA 56 Query: 295 KGLXXXXXXXXXXXXXXXXFDPAVAGYGGLMPSLGANAVNLGMQDVRGSSKSFPKHETRH 474 KGL FD A G GGL LG +AV+ +Q+VRG SK+FPKHETRH Sbjct: 57 KGLAAEREEAARGGGAPPAFDSA--GGGGLARPLGTSAVDFSVQNVRGPSKTFPKHETRH 114 Query: 475 VSDHKNVARCAKFSPDGRYFATGSGDTSIKFFEVAKIKQMMLGDSKEGPVRPVIRTFYDH 654 +SDHKNVARCAKFSPDG++FATGSGDTSIKFFEV+KIKQ MLGDSKEGP RPV+RTFYDH Sbjct: 115 ISDHKNVARCAKFSPDGKHFATGSGDTSIKFFEVSKIKQTMLGDSKEGPGRPVVRTFYDH 174 Query: 655 MQPVNDLDFHPVNPILVSAAKDNTIKFFDFSKTVARKAFRVIQDTHNVRSVCFHPCGDYL 834 +QP+NDLDFHP++PIL+SAAKDNTIKFF+FSKT ARKAFRVIQDTHNVRSVCFHPCGDY+ Sbjct: 175 VQPINDLDFHPISPILISAAKDNTIKFFEFSKTAARKAFRVIQDTHNVRSVCFHPCGDYI 234 Query: 835 LAGTDHPVAHLYDVNTFSCYLSANPQDSSAAINQVCYSGTGSLYVTASKDGSLRIWDGVS 1014 LAGTDHPVAHLYDVNTF+C+LSANPQDSSAAINQV YSGTGS+YVTASKDGSLRIWDGVS Sbjct: 235 LAGTDHPVAHLYDVNTFTCFLSANPQDSSAAINQVRYSGTGSMYVTASKDGSLRIWDGVS 294 Query: 1015 AECVRPIIGAHGSAEATSAIFTKDERYILSCGKDSSIKLWEVGTGRLVKQYLGAVHRQFR 1194 AECVRPIIGAHGS EATSAIFTKDERYILS GKDS IKLWEVGTGRLVKQY G V+ QFR Sbjct: 295 AECVRPIIGAHGSVEATSAIFTKDERYILSSGKDSCIKLWEVGTGRLVKQYPGVVNTQFR 354 Query: 1195 CQAVFNESEEFVLSTDEQNNEVVIWDALTAEKVARLPTGHTGAPRSLEHSPVEPAFVTCG 1374 CQAVFNE+EEFVLSTDEQNNEVV+WDALT+E+VARLP+GHTGAPR LEHSPV+ FVTCG Sbjct: 355 CQAVFNETEEFVLSTDEQNNEVVVWDALTSERVARLPSGHTGAPRWLEHSPVDAVFVTCG 414 Query: 1375 NDRSIRFWK 1401 NDRS+RFWK Sbjct: 415 NDRSVRFWK 423 >gb|AAM47578.1| putative cleavage stimulation factor subunit 1 [Sorghum bicolor] Length = 423 Score = 671 bits (1732), Expect = 0.0 Identities = 338/432 (78%), Positives = 363/432 (84%) Frame = +1 Query: 115 MDAAVQEAKLLRQVNALIVAHLRDQNLTQXXXXXXXXTMTXXXXXXXXXXXXNNLLRLVA 294 M+ AVQEAKLLRQVNALIVAHLR QNL Q TMT N LLRLVA Sbjct: 1 MNEAVQEAKLLRQVNALIVAHLRSQNLGQAAAAVAAATMTPISAAESVPA--NQLLRLVA 58 Query: 295 KGLXXXXXXXXXXXXXXXXFDPAVAGYGGLMPSLGANAVNLGMQDVRGSSKSFPKHETRH 474 KGL FD A G+GG + LG++AV+ MQDV+GSSKSFPKHE +H Sbjct: 59 KGLAAEGGGGAASA-----FDSA--GFGGAVQPLGSSAVDFSMQDVKGSSKSFPKHEAKH 111 Query: 475 VSDHKNVARCAKFSPDGRYFATGSGDTSIKFFEVAKIKQMMLGDSKEGPVRPVIRTFYDH 654 VSDHKN ARCAKFSPDG+YFATGS DTSIKFFEVAKIKQ M+GDSK+GP RPVIRTFYDH Sbjct: 112 VSDHKNAARCAKFSPDGKYFATGSADTSIKFFEVAKIKQTMVGDSKDGPARPVIRTFYDH 171 Query: 655 MQPVNDLDFHPVNPILVSAAKDNTIKFFDFSKTVARKAFRVIQDTHNVRSVCFHPCGDYL 834 Q +NDLDFHP +PIL+SAAKDNTIKFFDFSKT ARKAFRVIQDTHNVRSVCFHPCGDYL Sbjct: 172 TQAINDLDFHPESPILISAAKDNTIKFFDFSKTNARKAFRVIQDTHNVRSVCFHPCGDYL 231 Query: 835 LAGTDHPVAHLYDVNTFSCYLSANPQDSSAAINQVCYSGTGSLYVTASKDGSLRIWDGVS 1014 LAGTDHPVAHLYD+NTF+CYLSAN QDSS+ INQV YS TGSLYVTASKDGSLRIWDGVS Sbjct: 232 LAGTDHPVAHLYDINTFTCYLSANAQDSSSPINQVRYSCTGSLYVTASKDGSLRIWDGVS 291 Query: 1015 AECVRPIIGAHGSAEATSAIFTKDERYILSCGKDSSIKLWEVGTGRLVKQYLGAVHRQFR 1194 AECVRPIIGAHGSAEATSAIFT+DERY+LSCGKDS +KLWEVGTGRLVKQY GA+ RQFR Sbjct: 292 AECVRPIIGAHGSAEATSAIFTRDERYVLSCGKDSCVKLWEVGTGRLVKQYAGAIRRQFR 351 Query: 1195 CQAVFNESEEFVLSTDEQNNEVVIWDALTAEKVARLPTGHTGAPRSLEHSPVEPAFVTCG 1374 CQAVFNE+EEFVLS DEQNNEVV+WDALTAEKVARLP+G TGAPR L+HSPVEP FV CG Sbjct: 352 CQAVFNETEEFVLSVDEQNNEVVVWDALTAEKVARLPSGSTGAPRWLDHSPVEPVFVICG 411 Query: 1375 NDRSIRFWKQTV 1410 NDRSIRFWKQTV Sbjct: 412 NDRSIRFWKQTV 423