BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bbasst002j02
         (755 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001050397.1| Os03g0424500 [Oryza sativa (japonica cultiva...   286   1e-75
gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subc...   285   2e-75
gb|ABR25439.1| 40S ribosomal protein S19 [Oryza sativa (indica c...   283   6e-75
gb|AAW34237.1| putative ribosomal protein S19 [Oryza sativa (jap...   276   7e-73
gb|AAW34236.1| putative ribosomal protein S19 [Oryza sativa (jap...   274   5e-72

>ref|NP_001050397.1| Os03g0424500 [Oryza sativa (japonica cultivar-group)]
 sp|P40978|RS19_ORYSJ 40S ribosomal protein S19
 gb|AAP20842.1| putative ribosomal protein S19 [Oryza sativa (japonica
           cultivar-group)]
 gb|AAP20855.1| putative ribosomal protein S19 [Oryza sativa (japonica
           cultivar-group)]
 gb|ABF96698.1| 40S ribosomal protein S19, putative, expressed [Oryza sativa
           (japonica cultivar-group)]
 dbj|BAF12311.1| Os03g0424500 [Oryza sativa (japonica cultivar-group)]
 gb|EAY90519.1| hypothetical protein OsI_011752 [Oryza sativa (indica
           cultivar-group)]
 gb|EAY90521.1| hypothetical protein OsI_011754 [Oryza sativa (indica
           cultivar-group)]
 gb|EAZ27384.1| hypothetical protein OsJ_010867 [Oryza sativa (japonica
           cultivar-group)]
 gb|EAZ27386.1| hypothetical protein OsJ_010869 [Oryza sativa (japonica
           cultivar-group)]
          Length = 146

 Score =  286 bits (731), Expect = 1e-75
 Identities = 138/143 (96%), Positives = 141/143 (98%)
 Frame = +3

Query: 90  MAASTARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRA 269
           MA STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRA
Sbjct: 1   MADSTARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRA 60

Query: 270 ASMARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQQLQKMGIIDVDP 449
           AS+ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGA+SRNILQQLQKMGIIDVDP
Sbjct: 61  ASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDP 120

Query: 450 KGGRLITSQGRRDLDQVAGRVAI 518
           KGGRLITSQGRRDLDQVAGRV +
Sbjct: 121 KGGRLITSQGRRDLDQVAGRVDV 143


>gb|ABF96702.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           (japonica cultivar-group)]
          Length = 1518

 Score =  285 bits (730), Expect = 2e-75
 Identities = 138/141 (97%), Positives = 140/141 (99%)
 Frame = +3

Query: 90  MAASTARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRA 269
           MA STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRA
Sbjct: 1   MADSTARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRA 60

Query: 270 ASMARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQQLQKMGIIDVDP 449
           AS+ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGA+SRNILQQLQKMGIIDVDP
Sbjct: 61  ASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDP 120

Query: 450 KGGRLITSQGRRDLDQVAGRV 512
           KGGRLITSQGRRDLDQVAGRV
Sbjct: 121 KGGRLITSQGRRDLDQVAGRV 141


>gb|ABR25439.1| 40S ribosomal protein S19 [Oryza sativa (indica cultivar-group)]
          Length = 146

 Score =  283 bits (725), Expect = 6e-75
 Identities = 137/143 (95%), Positives = 140/143 (97%)
 Frame = +3

Query: 90  MAASTARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRA 269
           MA STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRA
Sbjct: 1   MADSTARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRA 60

Query: 270 ASMARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQQLQKMGIIDVDP 449
           AS+ARKIYLRQGIGV GFQKIYGGRQRNGSRPPHFCKSSGA+SRNILQQLQKMGIIDVDP
Sbjct: 61  ASIARKIYLRQGIGVSGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDP 120

Query: 450 KGGRLITSQGRRDLDQVAGRVAI 518
           KGGRLITSQGRRDLDQVAGRV +
Sbjct: 121 KGGRLITSQGRRDLDQVAGRVDV 143


>gb|AAW34237.1| putative ribosomal protein S19 [Oryza sativa (japonica
           cultivar-group)]
          Length = 144

 Score =  276 bits (707), Expect = 7e-73
 Identities = 136/143 (95%), Positives = 139/143 (97%)
 Frame = +3

Query: 90  MAASTARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRA 269
           MA STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRA
Sbjct: 1   MADSTARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRA 60

Query: 270 ASMARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQQLQKMGIIDVDP 449
           AS+ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGA+SRNILQQLQKMGIIDVDP
Sbjct: 61  ASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDP 120

Query: 450 KGGRLITSQGRRDLDQVAGRVAI 518
           KG  LITSQGRRDLDQVAGRV +
Sbjct: 121 KG--LITSQGRRDLDQVAGRVDV 141


>gb|AAW34236.1| putative ribosomal protein S19 [Oryza sativa (japonica
           cultivar-group)]
          Length = 166

 Score =  274 bits (700), Expect = 5e-72
 Identities = 138/163 (84%), Positives = 141/163 (86%), Gaps = 20/163 (12%)
 Frame = +3

Query: 90  MAASTARTVKDVNPHEFVKAYSAHLKRSGK--------------------MELPEWVDIV 209
           MA STARTVKDVNPHEFVKAYSAHLKRSGK                    MELPEWVDIV
Sbjct: 1   MADSTARTVKDVNPHEFVKAYSAHLKRSGKLFVASQELLLLGNLRISFYQMELPEWVDIV 60

Query: 210 KTARFKELPPYDPDWYYTRAASMARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSG 389
           KTARFKELPPYDPDWYYTRAAS+ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSG
Sbjct: 61  KTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSG 120

Query: 390 AVSRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVAI 518
           A+SRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRV +
Sbjct: 121 AISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDV 163