BLASTX 2.2.17


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bbasst002d13
         (444 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           5,815,196 sequences; 2,006,227,497 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD19088.1| putative 60S ribosomal protein L39 [Oryza sativa...   117   2e-25
ref|NP_001048394.1| Os02g0797200 [Oryza sativa (japonica cultiva...   111   2e-23
gb|AAW50988.1| ribosomal protein L39 [Triticum aestivum]              110   2e-23
dbj|BAD72315.1| 60S ribosomal protein L39 [Oryza sativa (japonic...   109   5e-23
gb|ABK93945.1| unknown [Populus trichocarpa] >gi|118484214|gb|AB...   109   7e-23

>dbj|BAD19088.1| putative 60S ribosomal protein L39 [Oryza sativa (japonica
           cultivar-group)]
          Length = 118

 Score =  117 bits (294), Expect = 2e-25
 Identities = 61/76 (80%), Positives = 62/76 (81%), Gaps = 6/76 (7%)
 Frame = +1

Query: 7   PRVLPRPPPPQPL--RRH----AATMPSHKTFRIKQKLAKKMRQNRPIPYWIRMRTDNTI 168
           PR  P  PP   L  RR     AATMPSHKTFRIK+KLAKKMRQNRPIPYWIRMRTDNTI
Sbjct: 43  PRCRPLLPPFTHLGFRRRLFVPAATMPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTI 102

Query: 169 RYNAKRRHWRRTKLGF 216
           RYNAKRRHWRRTKLGF
Sbjct: 103 RYNAKRRHWRRTKLGF 118


>ref|NP_001048394.1| Os02g0797200 [Oryza sativa (japonica cultivar-group)]
 ref|NP_001105473.1| ribosomal protein L39 [Zea mays]
 sp|P51425|RL39_MAIZE 60S ribosomal protein L39
 sp|P51426|RL39_ORYSJ 60S ribosomal protein L39
 emb|CAA64728.1| ribosomal protein L39 [Zea mays]
 dbj|BAD19090.1| 60S RIBOSOMAL PROTEIN L39 [Oryza sativa (japonica cultivar-group)]
 dbj|BAF10308.1| Os02g0797200 [Oryza sativa (japonica cultivar-group)]
 gb|EAY87865.1| hypothetical protein OsI_009098 [Oryza sativa (indica
           cultivar-group)]
 gb|EAY87867.1| hypothetical protein OsI_009100 [Oryza sativa (indica
           cultivar-group)]
 gb|EAZ24944.1| hypothetical protein OsJ_008427 [Oryza sativa (japonica
           cultivar-group)]
 gb|EAZ24946.1| hypothetical protein OsJ_008429 [Oryza sativa (japonica
           cultivar-group)]
 gb|ABR25460.1| 60S ribosomal protein l39 [Oryza sativa (indica cultivar-group)]
          Length = 51

 Score =  111 bits (277), Expect = 2e-23
 Identities = 50/51 (98%), Positives = 51/51 (100%)
 Frame = +1

Query: 64  MPSHKTFRIKQKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 216
           MPSHKTFRIK+KLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51


>gb|AAW50988.1| ribosomal protein L39 [Triticum aestivum]
          Length = 51

 Score =  110 bits (276), Expect = 2e-23
 Identities = 50/51 (98%), Positives = 50/51 (98%)
 Frame = +1

Query: 64  MPSHKTFRIKQKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 216
           MPSHKTFRIKQKLAKK RQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51


>dbj|BAD72315.1| 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)]
 dbj|BAD72572.1| 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)]
 gb|EAY99918.1| hypothetical protein OsI_021151 [Oryza sativa (indica
           cultivar-group)]
 gb|EAZ36044.1| hypothetical protein OsJ_019527 [Oryza sativa (japonica
           cultivar-group)]
          Length = 51

 Score =  109 bits (273), Expect = 5e-23
 Identities = 49/51 (96%), Positives = 51/51 (100%)
 Frame = +1

Query: 64  MPSHKTFRIKQKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 216
           MPSHKTF+IK+KLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51


>gb|ABK93945.1| unknown [Populus trichocarpa]
 gb|ABK93987.1| unknown [Populus trichocarpa]
 gb|ABK94198.1| unknown [Populus trichocarpa]
 gb|ABK94389.1| unknown [Populus trichocarpa]
 gb|ABK94404.1| unknown [Populus trichocarpa]
 gb|ABK94409.1| unknown [Populus trichocarpa]
 gb|ABK95172.1| unknown [Populus trichocarpa]
          Length = 51

 Score =  109 bits (272), Expect = 7e-23
 Identities = 49/51 (96%), Positives = 51/51 (100%)
 Frame = +1

Query: 64  MPSHKTFRIKQKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 216
           MPSHKTFRIK+KLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 51